Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 S 1.81399 * 109.47030 * 179.97438 * 16 15 13 18 18 C 1.76203 * 103.00086 * 179.97438 * 17 16 15 19 19 C 1.38958 * 120.06205 * 359.72122 * 18 17 16 20 20 C 1.38092 * 119.92743 * 179.79326 * 19 18 17 21 21 C 1.38392 * 120.06747 * 0.48340 * 20 19 18 22 22 Cl 1.73606 * 119.93423 * 179.72515 * 21 20 19 23 23 C 1.38399 * 120.13503 * 359.74966 * 21 20 19 24 24 C 1.38079 * 120.06627 * 0.02562 * 23 21 20 25 25 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 28 28 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 29 29 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 30 30 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 31 31 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 32 32 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 33 33 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 34 34 H 1.08002 * 120.03917 * 0.02603 * 19 18 17 35 35 H 1.08002 * 119.96659 * 180.21196 * 20 19 18 36 36 H 1.08003 * 119.96652 * 180.02562 * 23 21 20 37 37 H 1.08006 * 120.03331 * 179.97438 * 24 23 21 38 38 H 1.09001 * 113.77016 * 221.05654 * 25 12 11 39 39 H 1.09005 * 113.86980 * 89.67729 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 16 -1.5889 -7.5230 3.9626 18 6 -1.6788 -9.2784 4.0861 19 6 -0.8873 -10.0753 3.2680 20 6 -0.9569 -11.4507 3.3701 21 6 -1.8211 -12.0356 4.2791 22 17 -1.9110 -13.7651 4.3995 23 6 -2.6143 -11.2446 5.0919 24 6 -2.5458 -9.8687 4.9976 25 6 2.1615 -3.7405 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3764 -1.7802 -0.9678 28 1 1.3966 -2.5373 2.2104 29 1 -0.2731 -2.8605 1.5670 30 1 0.1879 -5.3004 3.3596 31 1 -1.0946 -5.3215 2.1255 32 1 -0.6840 -7.7370 1.7414 33 1 0.5985 -7.7151 2.9756 34 1 -0.2156 -9.6194 2.5556 35 1 -0.3394 -12.0706 2.7369 36 1 -3.2875 -11.7039 5.8006 37 1 -3.1653 -9.2519 5.6319 38 1 2.1758 -4.2745 -0.9513 39 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186821774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -38.127000 kcal Electronic energy + Delta-G solvation = -23383.858906 eV Core-core repulsion = 19637.487427 eV Total energy + Delta-G solvation = -3746.371479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.63807 -39.43568 -37.58913 -36.76445 -34.02456 -33.00815 -32.25587 -31.45030 -31.11880 -28.83436 -25.92248 -25.34268 -24.16327 -23.12391 -22.71687 -20.08289 -18.43505 -18.08537 -17.54491 -16.96314 -16.45869 -15.78316 -15.75369 -15.61244 -15.10258 -14.87078 -14.31796 -14.17615 -13.98590 -13.92996 -13.84453 -13.10583 -12.75542 -12.51250 -12.28169 -12.20393 -12.10241 -12.01793 -11.77950 -11.60736 -11.41921 -11.18785 -11.15271 -11.07054 -10.57927 -10.44496 -10.34976 -9.79279 -9.73391 -9.47553 -9.30737 -8.82656 -8.49928 -7.94447 -7.65356 -6.44972 -4.55251 0.64121 0.89031 1.16724 1.80142 2.13931 3.04869 3.10820 3.16828 3.19611 3.22701 3.47454 4.14149 4.37103 4.47114 4.63193 4.77290 4.79713 4.85948 4.92380 4.99043 5.14882 5.40012 5.51945 5.53427 5.62319 5.65450 5.75788 5.83222 5.84404 5.89392 6.09464 6.29557 6.29807 6.42612 6.52598 6.59432 7.02815 7.57883 7.75805 8.36561 8.47948 8.59780 9.16119 9.39581 10.61774 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.001778 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.881907 B =15746.395222 C =16203.310198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.075 3.925 12 N -0.630 5.630 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.120 4.120 16 C -0.089 4.089 17 S -0.104 6.104 18 C -0.076 4.076 19 C -0.121 4.121 20 C -0.088 4.088 21 C -0.045 4.045 22 Cl -0.073 7.073 23 C -0.092 4.092 24 C -0.091 4.091 25 C 0.112 3.888 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -16.851 10.643 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.048 4.048 12 N -0.363 5.363 13 C 0.321 3.679 14 O -0.448 6.448 15 C -0.161 4.161 16 C -0.237 4.237 17 S 0.142 5.858 18 C -0.189 4.189 19 C -0.145 4.145 20 C -0.109 4.109 21 C -0.074 4.074 22 Cl -0.044 7.044 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.010 4.010 26 H 0.084 0.916 27 H 0.249 0.751 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.508 -17.136 10.853 21.018 hybrid contribution 0.750 0.293 -0.371 0.887 sum -4.758 -16.843 10.482 20.401 Atomic orbital electron populations 1.69311 1.06189 1.28248 1.50094 1.25073 0.95033 0.99921 0.93010 0.86321 0.79842 0.81925 0.78385 1.20303 1.19531 1.20872 1.21502 0.93942 0.89928 1.52162 0.91024 1.19839 0.85462 0.91228 0.83789 1.86059 1.45195 1.50563 1.56747 1.24381 1.00140 0.77507 1.02735 1.50166 1.41812 1.04627 1.39679 1.19841 0.83094 0.81867 0.83053 1.90642 1.56730 1.40233 1.57193 1.21243 1.00735 0.94364 0.99792 1.23454 1.00331 1.00119 0.99819 1.85519 1.52401 0.99080 1.48806 1.21925 0.99851 0.97619 0.99542 1.21292 1.00077 0.93276 0.99895 1.20983 0.97758 0.94612 0.97511 1.20915 1.01166 0.84615 1.00716 1.98372 1.97697 1.10740 1.97590 1.20965 0.98718 0.92842 0.98753 1.20727 0.98540 0.93919 0.98308 1.23482 0.93785 0.92491 0.91234 0.91591 0.75115 0.89822 0.91216 0.88203 0.87983 0.88351 0.88450 0.84408 0.84538 0.84463 0.84446 0.91085 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.99 11.09 55.43 0.61 -21.38 16 2 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 18.91 29.54 -169.99 -5.02 13.89 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.54 -12.99 8.62 -34.44 -0.30 -13.28 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 5.48 1.44 -90.84 -0.13 5.35 16 10 O -0.57 -14.25 13.48 -35.23 -0.48 -14.73 16 11 C 0.08 1.51 8.01 -2.97 -0.02 1.49 16 12 N -0.63 -12.51 3.61 -178.30 -0.64 -13.16 16 13 C 0.53 9.91 8.06 -10.99 -0.09 9.83 16 14 O -0.57 -11.97 16.71 5.55 0.09 -11.88 16 15 C -0.12 -1.67 5.46 -27.88 -0.15 -1.82 16 16 C -0.09 -1.10 3.62 37.16 0.13 -0.96 16 17 S -0.10 -1.17 21.92 -107.50 -2.36 -3.52 16 18 C -0.08 -0.81 6.11 -39.05 -0.24 -1.05 16 19 C -0.12 -1.26 9.36 -39.37 -0.37 -1.63 16 20 C -0.09 -0.84 9.82 -39.58 -0.39 -1.22 16 21 C -0.04 -0.41 6.32 -39.47 -0.25 -0.66 16 22 Cl -0.07 -0.62 28.95 -51.86 -1.50 -2.13 16 23 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 24 C -0.09 -0.83 9.79 -39.37 -0.39 -1.22 16 25 C 0.11 2.34 8.22 -2.97 -0.02 2.32 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.39 9.87 6.46 45.56 0.29 10.16 16 28 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.27 7.69 -51.92 -0.40 0.87 16 33 H 0.10 1.21 7.72 -51.92 -0.40 0.81 16 34 H 0.14 1.41 5.88 -52.49 -0.31 1.10 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -27.00 363.46 -10.67 -37.67 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.16 Total: 12.14 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.70 Total: -2.40 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.03 Total: -34.53 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.38 Total: -26.61 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.36 Total: -3.52 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.00 -10.67 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186821774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.453 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds