Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 S 1.81399 * 109.47030 * 179.97438 * 16 15 13 18 18 C 1.76203 * 103.00086 * 179.97438 * 17 16 15 19 19 C 1.38958 * 120.06205 * 359.72122 * 18 17 16 20 20 C 1.38092 * 119.92743 * 179.79326 * 19 18 17 21 21 C 1.38392 * 120.06747 * 0.48340 * 20 19 18 22 22 Cl 1.73606 * 119.93423 * 179.72515 * 21 20 19 23 23 C 1.38399 * 120.13503 * 359.74966 * 21 20 19 24 24 C 1.38079 * 120.06627 * 0.02562 * 23 21 20 25 25 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 28 28 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 29 29 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 30 30 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 31 31 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 32 32 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 33 33 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 34 34 H 1.08002 * 120.03917 * 0.02603 * 19 18 17 35 35 H 1.08002 * 119.96659 * 180.21196 * 20 19 18 36 36 H 1.08003 * 119.96652 * 180.02562 * 23 21 20 37 37 H 1.08006 * 120.03331 * 179.97438 * 24 23 21 38 38 H 1.09001 * 113.77016 * 221.05654 * 25 12 11 39 39 H 1.09005 * 113.86980 * 89.67729 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 16 -1.5889 -7.5230 3.9626 18 6 -1.6788 -9.2784 4.0861 19 6 -0.8873 -10.0753 3.2680 20 6 -0.9569 -11.4507 3.3701 21 6 -1.8211 -12.0356 4.2791 22 17 -1.9110 -13.7651 4.3995 23 6 -2.6143 -11.2446 5.0919 24 6 -2.5458 -9.8687 4.9976 25 6 2.1615 -3.7405 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3764 -1.7802 -0.9678 28 1 1.3966 -2.5373 2.2104 29 1 -0.2731 -2.8605 1.5670 30 1 0.1879 -5.3004 3.3596 31 1 -1.0946 -5.3215 2.1255 32 1 -0.6840 -7.7370 1.7414 33 1 0.5985 -7.7151 2.9756 34 1 -0.2156 -9.6194 2.5556 35 1 -0.3394 -12.0706 2.7369 36 1 -3.2875 -11.7039 5.8006 37 1 -3.1653 -9.2519 5.6319 38 1 2.1758 -4.2745 -0.9513 39 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186821774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -52.462265 kcal Electronic energy + Delta-G solvation = -23384.480530 eV Core-core repulsion = 19637.487427 eV Total energy + Delta-G solvation = -3746.993103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22827 -40.14922 -39.20672 -37.45683 -35.82242 -34.17259 -34.11679 -32.19679 -31.85130 -30.44900 -27.53837 -27.00276 -25.36167 -23.85556 -23.57879 -21.72016 -19.95941 -19.28056 -18.88728 -18.20316 -17.51282 -17.26776 -17.04132 -16.71106 -16.53146 -15.93882 -15.68722 -15.60552 -15.02713 -14.76123 -14.66502 -14.56003 -14.33024 -13.94341 -13.72652 -13.41810 -13.36714 -12.95441 -12.92343 -12.81095 -12.74194 -12.57113 -12.49514 -12.24976 -12.19707 -11.87524 -11.41169 -11.32360 -10.97488 -10.63556 -10.54779 -10.24840 -10.18289 -9.59283 -8.48061 -8.26262 -6.42652 -0.10171 0.18112 0.27756 1.07991 1.26631 1.46960 1.51128 1.57231 1.60064 1.97534 2.41348 2.44440 2.96694 3.46453 3.55149 3.68178 3.75784 3.79796 3.83423 4.16080 4.18761 4.27250 4.35069 4.45470 4.46915 4.52648 4.62943 4.71965 4.81012 4.84498 4.91112 4.93727 4.95400 5.10592 5.14431 5.25250 5.59664 5.73932 5.93660 6.62678 6.82354 7.07537 7.30974 7.47821 8.79590 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.001778 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.881907 B =15746.395222 C =16203.310198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.091 3.909 12 N -0.634 5.634 13 C 0.529 3.471 14 O -0.595 6.595 15 C -0.110 4.110 16 C -0.085 4.085 17 S -0.094 6.094 18 C -0.093 4.093 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.050 4.050 22 Cl -0.067 7.067 23 C -0.089 4.089 24 C -0.091 4.091 25 C 0.111 3.889 26 H 0.276 0.724 27 H 0.389 0.611 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.058 0.942 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -17.141 12.272 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.175 3.825 10 O -0.400 6.400 11 C -0.031 4.031 12 N -0.366 5.366 13 C 0.318 3.682 14 O -0.478 6.478 15 C -0.150 4.150 16 C -0.233 4.233 17 S 0.151 5.849 18 C -0.206 4.206 19 C -0.156 4.156 20 C -0.115 4.115 21 C -0.080 4.080 22 Cl -0.038 7.038 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.012 4.012 26 H 0.086 0.914 27 H 0.244 0.756 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.076 0.924 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.946 -17.445 12.494 22.266 hybrid contribution 0.868 0.276 -0.895 1.277 sum -5.078 -17.169 11.599 21.333 Atomic orbital electron populations 1.69371 1.07032 1.28902 1.50301 1.25720 0.95759 1.02498 0.92728 0.85413 0.78473 0.78462 0.78420 1.19649 1.19676 1.21010 1.21727 0.94137 0.90809 1.52619 0.91034 1.20144 0.85627 0.91757 0.84984 1.86045 1.45663 1.50368 1.57940 1.24153 1.00388 0.77291 1.01277 1.50185 1.41740 1.05146 1.39575 1.20624 0.83313 0.80812 0.83405 1.90625 1.57898 1.40882 1.58402 1.21206 0.99364 0.95706 0.98763 1.23303 1.00925 0.98893 1.00221 1.85378 1.51702 0.99904 1.47876 1.22043 1.00844 0.97193 1.00518 1.21322 1.00376 0.93774 1.00146 1.21136 0.98074 0.94448 0.97854 1.21069 1.01129 0.85069 1.00692 1.98375 1.97661 1.10241 1.97552 1.21244 0.98508 0.92566 0.98643 1.20967 0.98162 0.94443 0.97948 1.23458 0.94580 0.91741 0.91371 0.91421 0.75631 0.88607 0.90980 0.86218 0.87194 0.89239 0.88694 0.84896 0.83513 0.82151 0.82764 0.92395 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.53 11.09 21.45 0.24 -44.29 16 2 C 0.03 1.60 5.40 84.66 0.46 2.06 16 3 Si 0.97 38.21 29.54 68.60 2.03 40.24 16 4 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.55 -26.65 8.62 25.60 0.22 -26.43 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 9 C 0.22 9.92 1.44 -10.88 -0.02 9.91 16 10 O -0.59 -29.62 13.48 -148.98 -2.01 -31.63 16 11 C 0.09 3.60 8.01 86.48 0.69 4.29 16 12 N -0.63 -24.84 3.61 -840.23 -3.03 -27.88 16 13 C 0.53 19.36 8.06 87.66 0.71 20.07 16 14 O -0.60 -25.19 16.71 -3.04 -0.05 -25.25 16 15 C -0.11 -2.92 5.46 29.85 0.16 -2.75 16 16 C -0.08 -2.04 3.62 71.98 0.26 -1.78 16 17 S -0.09 -1.98 21.92 -56.49 -1.24 -3.21 16 18 C -0.09 -1.86 6.11 22.61 0.14 -1.72 16 19 C -0.13 -2.66 9.36 22.41 0.21 -2.45 16 20 C -0.09 -1.71 9.82 22.27 0.22 -1.49 16 21 C -0.05 -0.85 6.32 22.34 0.14 -0.71 16 22 Cl -0.07 -1.05 28.95 -2.72 -0.08 -1.12 16 23 C -0.09 -1.32 9.82 22.27 0.22 -1.10 16 24 C -0.09 -1.49 9.79 22.40 0.22 -1.27 16 25 C 0.11 4.64 8.22 86.48 0.71 5.36 16 26 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 27 H 0.39 19.82 6.46 -74.06 -0.48 19.34 16 28 H 0.10 3.52 8.09 -2.39 -0.02 3.51 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.09 2.30 7.69 -2.39 -0.02 2.28 16 33 H 0.09 2.31 7.72 -2.39 -0.02 2.30 16 34 H 0.13 2.73 5.88 -2.91 -0.02 2.72 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.10 3.89 8.09 -2.38 -0.02 3.87 16 Total: -1.00 -56.44 363.46 0.81 -55.63 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.61 Total: 35.54 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.34 Total: 1.97 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -2.79 Total: -72.17 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.06 Total: -56.87 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -1.24 Total: -3.21 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.12 kcal Total: -56.44 0.81 -55.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186821774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.169 kcal (2) G-P(sol) polarization free energy of solvation -56.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds