Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65602 * 119.99473 * 2 1 4 4 O 1.42101 * 106.39820 * 178.53940 * 3 2 1 5 5 O 1.42098 * 106.40389 * 311.46195 * 3 2 1 6 6 C 1.76204 * 107.21818 * 65.00151 * 3 2 1 7 7 C 1.37842 * 119.93553 * 114.71739 * 6 3 2 8 8 C 1.39698 * 119.87140 * 179.79492 * 7 6 3 9 9 C 1.47610 * 120.12532 * 180.23934 * 8 7 6 10 10 O 1.21611 * 119.99748 * 223.14335 * 9 8 7 11 11 N 1.34774 * 120.00371 * 43.13569 * 9 8 7 12 12 C 1.36887 * 120.00317 * 182.47164 * 11 9 8 13 13 H 1.08001 * 120.00180 * 348.93137 * 12 11 9 14 14 C 1.39039 * 120.00531 * 168.93299 * 12 11 9 15 15 N 1.31377 * 119.99182 * 3.35317 * 14 12 11 16 16 Si 1.86795 * 120.00461 * 183.34981 * 14 12 11 17 17 H 1.48499 * 109.47069 * 60.00005 * 16 14 12 18 18 H 1.48496 * 109.46980 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47113 * 300.00149 * 16 14 12 20 20 C 1.46507 * 119.99906 * 2.46854 * 11 9 8 21 21 C 1.47199 * 109.46871 * 263.35084 * 20 11 9 22 22 N 5.47247 * 151.76038 * 40.16504 * 2 1 3 23 23 C 1.39734 * 119.75301 * 0.48378 * 8 7 6 24 24 C 1.37803 * 119.86949 * 359.75011 * 23 8 7 25 25 C 1.38640 * 119.93893 * 295.00203 * 6 3 2 26 26 F 1.35105 * 119.87402 * 359.97438 * 25 6 3 27 27 H 1.08994 * 109.47370 * 60.00239 * 1 2 3 28 28 H 1.09011 * 109.46557 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47251 * 299.99371 * 1 2 3 30 30 H 0.96999 * 120.00711 * 180.02562 * 2 1 3 31 31 H 1.08002 * 120.06333 * 0.02562 * 7 6 3 32 32 H 0.97003 * 119.99108 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.46842 * 23.35320 * 20 11 9 34 34 H 1.08993 * 109.47168 * 143.35385 * 20 11 9 35 35 H 1.08000 * 120.06622 * 179.73327 * 23 8 7 36 36 H 1.08004 * 119.93627 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6737 1.1004 0.0347 5 8 1.7118 2.2330 -1.0215 6 6 1.9377 2.2415 1.5254 7 6 2.9433 2.4470 2.4454 8 6 2.6611 3.0910 3.6526 9 6 3.7348 3.3187 4.6395 10 8 3.5275 3.1174 5.8208 11 7 4.9449 3.7495 4.2316 12 6 5.9557 3.9122 5.1403 13 1 5.7426 3.8705 6.1983 14 6 7.2567 4.1311 4.7014 15 7 7.5055 4.2476 3.4167 16 14 8.6506 4.2598 5.9382 17 1 8.7416 2.9971 6.7145 18 1 9.9295 4.4921 5.2202 19 1 8.3887 5.3917 6.8631 20 6 5.1787 4.0436 2.8155 21 6 5.8038 2.8782 2.1691 22 7 6.2862 1.9788 1.6701 23 6 1.3574 3.5143 3.9244 24 6 0.3590 3.2992 2.9993 25 6 0.6460 2.6636 1.8005 26 9 -0.3368 2.4549 0.8973 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.9501 -0.8400 -0.0004 31 1 3.9483 2.1141 2.2319 32 1 8.4132 4.4000 3.1104 33 1 4.2286 4.2632 2.3284 34 1 5.8397 4.9057 2.7278 35 1 1.1327 4.0089 4.8579 36 1 -0.6490 3.6256 3.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267681552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -79.988387 kcal Electronic energy + Delta-G solvation = -28217.191993 eV Core-core repulsion = 23937.128549 eV Total energy + Delta-G solvation = -4280.063444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.50693 -41.47989 -39.31131 -38.44218 -37.83332 -37.10039 -36.23077 -36.00091 -33.97099 -32.71187 -31.94019 -29.33805 -27.12372 -26.93167 -24.83909 -24.61285 -22.01424 -20.54233 -19.97153 -19.52026 -18.96776 -18.65264 -18.12367 -17.88885 -17.50608 -17.46550 -16.84765 -16.65060 -16.00296 -15.78652 -15.75438 -15.51326 -15.08298 -14.62653 -14.58884 -14.48384 -14.08201 -13.94058 -13.83607 -13.53525 -13.42493 -13.34533 -13.25779 -13.12536 -13.11215 -12.94374 -12.48863 -12.41206 -12.23340 -12.16504 -11.97895 -11.25304 -10.83624 -10.75390 -10.59783 -10.16768 -10.01670 -8.38414 -6.07926 -0.87030 -0.61565 -0.31209 1.32913 1.43113 1.53152 1.61852 1.85313 1.89259 2.15025 2.26085 2.28146 2.51340 2.69092 2.86711 2.97092 3.13946 3.44357 3.55347 3.72464 3.84827 4.00844 4.15355 4.26389 4.33697 4.45916 4.56974 4.60078 4.77575 4.81519 4.95307 5.01668 5.05977 5.38786 5.45570 5.85242 5.99372 6.27023 6.94063 6.96577 7.18186 7.70236 8.52249 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.004282 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.131657 B = 6537.739125 C = 7598.446344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.106 6.106 3 S 2.702 3.298 4 O -0.973 6.973 5 O -0.968 6.968 6 C -0.718 4.718 7 C 0.003 3.997 8 C -0.142 4.142 9 C 0.479 3.521 10 O -0.605 6.605 11 N -0.439 5.439 12 C -0.330 4.330 13 H 0.098 0.902 14 C 0.002 3.998 15 N -0.895 5.895 16 Si 0.997 3.003 17 H -0.281 1.281 18 H -0.276 1.276 19 H -0.258 1.258 20 C 0.208 3.792 21 C 0.243 3.757 22 N -0.482 5.482 23 C 0.013 3.987 24 C -0.145 4.145 25 C 0.198 3.802 26 F -0.110 7.110 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.430 0.570 31 H 0.132 0.868 32 H 0.278 0.722 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 -2.213 -5.409 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.871 5.871 3 S 2.788 3.212 4 O -0.963 6.963 5 O -0.958 6.958 6 C -0.804 4.804 7 C -0.017 4.017 8 C -0.147 4.147 9 C 0.270 3.730 10 O -0.492 6.492 11 N -0.156 5.156 12 C -0.457 4.457 13 H 0.116 0.884 14 C -0.199 4.199 15 N -0.535 5.535 16 Si 0.821 3.179 17 H -0.207 1.207 18 H -0.201 1.201 19 H -0.183 1.183 20 C 0.082 3.918 21 C -0.074 4.074 22 N -0.163 5.163 23 C -0.006 4.006 24 C -0.164 4.164 25 C 0.177 3.823 26 F -0.088 7.088 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.089 0.911 30 H 0.268 0.732 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.679 -3.097 -6.371 17.205 hybrid contribution 0.901 -0.054 1.174 1.481 sum -14.778 -3.151 -5.197 15.978 Atomic orbital electron populations 1.22110 0.76674 1.06541 1.02947 1.55030 1.17269 1.23330 1.91423 1.01664 0.72547 0.73597 0.73417 1.93667 1.32140 1.83561 1.86946 1.93578 1.78960 1.69471 1.53793 1.30756 1.00045 1.24031 1.25582 1.21167 0.98406 0.91468 0.90692 1.20180 0.96102 1.03861 0.94543 1.18289 0.83394 0.83124 0.88234 1.90625 1.82314 1.57604 1.18611 1.43735 1.09837 1.55697 1.06345 1.19859 0.86626 1.48567 0.90644 0.88426 1.26056 1.00155 0.95032 0.98659 1.69792 1.22580 1.47260 1.13863 0.84906 0.76491 0.78923 0.77627 1.20681 1.20106 1.18278 1.19584 0.99821 0.92770 0.79650 1.29458 0.91723 0.93840 0.92346 1.80994 1.12027 1.12624 1.10609 1.21642 0.88996 0.90932 0.99064 1.21561 1.02903 1.00713 0.91210 1.17237 0.82646 0.94611 0.87785 1.91586 1.59900 1.91614 1.65679 0.91111 0.86706 0.91149 0.73248 0.85011 0.91105 0.87696 0.82719 0.81399 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 9.91 127.77 1.27 2.15 16 2 N -1.11 -21.64 6.19 -206.53 -1.28 -22.92 16 3 S 2.70 78.21 5.48 -56.49 -0.31 77.90 16 4 O -0.97 -35.94 16.96 -128.00 -2.17 -38.11 16 5 O -0.97 -31.24 17.14 -128.00 -2.19 -33.43 16 6 C -0.72 -20.68 5.89 22.27 0.13 -20.55 16 7 C 0.00 0.11 7.08 22.53 0.16 0.27 16 8 C -0.14 -4.98 4.96 -20.09 -0.10 -5.08 16 9 C 0.48 21.55 7.23 86.72 0.63 22.17 16 10 O -0.60 -30.72 16.56 -4.07 -0.07 -30.79 16 11 N -0.44 -20.76 2.60 -648.95 -1.69 -22.45 16 12 C -0.33 -16.88 9.48 84.10 0.80 -16.08 16 13 H 0.10 5.22 7.20 -2.91 -0.02 5.20 16 14 C 0.00 0.09 5.38 84.95 0.46 0.55 16 15 N -0.89 -43.56 8.07 21.68 0.17 -43.38 16 16 Si 1.00 40.12 29.55 68.60 2.03 42.14 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 C 0.21 8.86 4.76 84.57 0.40 9.26 16 21 C 0.24 11.53 10.51 89.44 0.94 12.47 16 22 N -0.48 -24.50 18.47 20.01 0.37 -24.13 16 23 C 0.01 0.32 9.67 22.53 0.22 0.54 16 24 C -0.15 -2.74 10.01 22.27 0.22 -2.52 16 25 C 0.20 4.53 6.67 22.47 0.15 4.68 16 26 F -0.11 -2.17 12.92 44.97 0.58 -1.59 16 27 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 0.94 5.39 -2.39 -0.01 0.93 16 30 H 0.43 6.76 8.96 -96.75 -0.87 5.89 16 31 H 0.13 5.36 3.50 -2.91 -0.01 5.35 16 32 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 33 H 0.11 3.73 5.67 -2.39 -0.01 3.71 16 34 H 0.16 6.71 5.99 -2.39 -0.01 6.70 16 35 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -72.67 324.18 1.04 -71.62 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.33 Total: 17.27 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.27 Total: 7.86 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -2.42 Total: -112.89 kcal Atomic # 8 Polarization: -97.90 SS G_CDS: -4.43 Total: -102.33 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.58 Total: -1.59 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 78.21 SS G_CDS: -0.31 Total: 77.90 kcal Total: -72.67 1.04 -71.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267681552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.364 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds