Wall clock time and date at job start Sat Apr 11 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33392 * 125.20293 * 2 1 4 4 C 1.38416 * 114.92034 * 179.75141 * 3 2 1 5 5 C 1.33390 * 114.92096 * 0.42862 * 4 3 2 6 6 S 1.76205 * 125.20335 * 179.86013 * 5 4 3 7 7 O 1.42103 * 106.40179 * 336.18234 * 6 5 4 8 8 O 1.42095 * 106.40086 * 203.25772 * 6 5 4 9 9 N 1.65604 * 107.21594 * 89.71873 * 6 5 4 10 10 C 1.39992 * 119.99959 * 65.00443 * 9 6 5 11 11 C 1.40428 * 125.97582 * 180.23225 * 10 9 6 12 12 C 1.35244 * 107.86169 * 180.14339 * 11 10 9 13 13 C 1.50703 * 126.06821 * 179.90447 * 12 11 10 14 14 N 1.34960 * 107.86266 * 359.63649 * 12 11 10 15 15 C 1.46498 * 125.97191 * 180.22991 * 14 12 11 16 16 C 1.50707 * 109.47366 * 90.00120 * 15 14 12 17 17 H 1.08005 * 119.99361 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00150 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99629 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99876 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47550 * 89.99783 * 20 18 16 22 22 H 1.48500 * 109.46867 * 209.99789 * 20 18 16 23 23 H 1.48503 * 109.47341 * 329.99518 * 20 18 16 24 24 N 1.31220 * 125.97468 * 359.97124 * 10 9 6 25 25 S 1.75880 * 125.20147 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47507 * 299.99966 * 1 2 3 28 28 H 1.08999 * 109.47577 * 59.99946 * 1 2 3 29 29 H 1.08006 * 122.53684 * 359.97438 * 3 2 1 30 30 H 1.08006 * 122.54045 * 180.27327 * 4 3 2 31 31 H 0.96999 * 119.99804 * 244.99536 * 9 6 5 32 32 H 1.08003 * 126.06914 * 0.02562 * 11 10 9 33 33 H 1.09002 * 109.47152 * 269.68518 * 13 12 11 34 34 H 1.09001 * 109.46980 * 149.68618 * 13 12 11 35 35 H 1.09004 * 109.47113 * 29.68599 * 13 12 11 36 36 H 1.09006 * 109.47531 * 210.00084 * 15 14 12 37 37 H 1.09008 * 109.47462 * 330.00263 * 15 14 12 38 38 H 0.97006 * 119.99820 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6378 0.8429 0.0054 5 6 3.9750 -0.4477 0.0008 6 16 5.6247 -1.0666 0.0023 7 8 6.4399 -0.0376 -0.5417 8 8 5.5619 -2.3778 -0.5416 9 7 6.0824 -1.2382 1.5846 10 6 5.4316 -2.1676 2.4046 11 6 5.7127 -2.4125 3.7585 12 6 4.8714 -3.3801 4.1885 13 6 4.8212 -3.9587 5.5791 14 7 4.0808 -3.7315 3.1527 15 6 3.0224 -4.7441 3.1828 16 6 1.7188 -4.0968 3.5737 17 1 1.6825 -3.0371 3.7795 18 6 0.5726 -4.8572 3.6685 19 7 -0.5650 -4.2922 4.0091 20 14 0.6358 -6.6900 3.3131 21 1 0.9312 -7.4277 4.5676 22 1 -0.6744 -7.1351 2.7741 23 1 1.7006 -6.9644 2.3150 24 7 4.4490 -2.9590 2.0439 25 16 2.5208 -1.4372 0.0006 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8668 2.0895 -0.0004 30 1 4.3720 1.6351 0.0104 31 1 6.8015 -0.6948 1.9431 32 1 6.4681 -1.9174 4.3508 33 1 5.4891 -4.8179 5.6395 34 1 3.8024 -4.2738 5.8050 35 1 5.1356 -3.2027 6.2987 36 1 2.9225 -5.1948 2.1953 37 1 3.2776 -5.5150 3.9099 38 1 -1.3713 -4.8273 4.0762 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271074004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:02 Heat of formation + Delta-G solvation = 35.686723 kcal Electronic energy + Delta-G solvation = -25430.552676 eV Core-core repulsion = 21721.718458 eV Total energy + Delta-G solvation = -3708.834219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71786 -37.85086 -37.04420 -35.76850 -35.42629 -33.28497 -31.99616 -31.50566 -31.16066 -27.19004 -26.97762 -26.52380 -23.16141 -22.82613 -20.80632 -20.50234 -19.66718 -18.33286 -17.66613 -17.29779 -17.17396 -16.49743 -15.85746 -15.39194 -14.96197 -14.67647 -14.31608 -14.02598 -13.91467 -13.44083 -13.10280 -12.91934 -12.71406 -12.63770 -12.45512 -12.26628 -12.15400 -12.05135 -12.02422 -11.87486 -11.82549 -11.75360 -11.43885 -11.11824 -10.91322 -10.73206 -10.43463 -10.14807 -9.98379 -9.70177 -8.87141 -8.84633 -8.33166 -8.11365 -7.71842 -6.33149 -4.36303 0.36052 0.77761 1.73254 2.08600 2.52929 2.55769 2.81952 3.09973 3.18758 3.21084 3.24161 3.49024 3.83433 4.16338 4.65143 4.83666 4.87655 5.02418 5.17468 5.28117 5.41628 5.54314 5.56618 5.63374 5.87632 5.89225 5.98815 6.00874 6.06519 6.15135 6.16990 6.37773 6.43449 6.49597 6.57371 6.94241 7.21406 7.25692 7.70590 8.22644 8.32850 8.71613 9.22381 10.78841 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005360 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.983804 B = 5222.461872 C = 6876.274496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.155 4.155 3 C -0.183 4.183 4 C 0.002 3.998 5 C -0.809 4.809 6 S 2.722 3.278 7 O -0.958 6.958 8 O -0.930 6.930 9 N -1.013 6.013 10 C 0.285 3.715 11 C -0.304 4.304 12 C 0.112 3.888 13 C -0.093 4.093 14 N -0.309 5.309 15 C 0.228 3.772 16 C -0.539 4.539 17 H 0.082 0.918 18 C 0.082 3.918 19 N -0.885 5.885 20 Si 0.867 3.133 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.262 1.262 24 N -0.312 5.312 25 S 0.310 5.690 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.431 0.569 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 7.562 -2.849 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.276 4.276 3 C -0.214 4.214 4 C -0.035 4.035 5 C -1.013 5.013 6 S 2.810 3.190 7 O -0.948 6.948 8 O -0.920 6.920 9 N -0.766 5.766 10 C 0.029 3.971 11 C -0.337 4.337 12 C -0.020 4.020 13 C -0.152 4.152 14 N -0.090 5.090 15 C 0.109 3.891 16 C -0.578 4.578 17 H 0.100 0.900 18 C -0.123 4.123 19 N -0.522 5.522 20 Si 0.693 3.307 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.186 1.186 24 N -0.142 5.142 25 S 0.579 5.421 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.268 0.732 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.771 5.164 -4.618 9.687 hybrid contribution 0.327 1.529 1.095 1.909 sum 7.098 6.693 -3.522 10.372 Atomic orbital electron populations 1.20457 0.87380 1.03959 1.03112 1.25450 1.01223 0.98478 1.02441 1.20113 0.92672 0.99538 1.09034 1.19775 0.96714 0.94054 0.92965 1.35504 1.27446 1.07736 1.30607 1.01130 0.72515 0.73669 0.71678 1.93586 1.66350 1.59414 1.75448 1.93633 1.86226 1.37165 1.74979 1.52604 1.46117 1.47510 1.30413 1.18549 0.94839 0.92916 0.90800 1.20570 1.10287 1.08841 0.94040 1.20921 0.92422 0.96596 0.92107 1.20451 1.04248 1.00810 0.89650 1.48507 1.26499 1.29378 1.04636 1.20089 0.84589 0.85031 0.99369 1.21134 0.90212 0.97866 1.48550 0.89955 1.24762 0.94989 0.98423 0.94111 1.69862 0.99524 1.36375 1.46441 0.86989 0.78650 0.85573 0.79538 1.19602 1.20478 1.18597 1.77354 1.16270 1.10329 1.10273 1.85028 0.90005 1.02916 1.64129 0.90616 0.89869 0.90278 0.84097 0.83577 0.73232 0.84052 0.90809 0.89590 0.90281 0.92817 0.93480 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.38 36.00 0.37 -0.77 16 2 C -0.15 -2.36 6.51 -36.00 -0.23 -2.59 16 3 C -0.18 -2.53 10.05 -41.21 -0.41 -2.95 16 4 C 0.00 0.03 9.84 -41.21 -0.41 -0.38 16 5 C -0.81 -13.57 6.51 29.04 0.19 -13.38 16 6 S 2.72 45.40 5.64 -107.50 -0.61 44.79 16 7 O -0.96 -15.94 17.80 -57.17 -1.02 -16.96 16 8 O -0.93 -18.57 17.12 -57.17 -0.98 -19.55 16 9 N -1.01 -15.27 5.91 31.39 0.19 -15.08 16 10 C 0.28 5.25 7.72 -154.55 -1.19 4.06 16 11 C -0.30 -5.09 10.74 -39.82 -0.43 -5.52 16 12 C 0.11 2.02 6.92 -82.28 -0.57 1.45 16 13 C -0.09 -1.32 9.89 36.01 0.36 -0.96 16 14 N -0.31 -6.63 3.59 -58.32 -0.21 -6.84 16 15 C 0.23 5.16 4.88 -5.19 -0.03 5.14 16 16 C -0.54 -14.05 9.94 -34.44 -0.34 -14.39 16 17 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 18 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 19 N -0.89 -24.85 13.96 55.43 0.77 -24.08 16 20 Si 0.87 19.29 27.47 -169.99 -4.67 14.63 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 24 N -0.31 -6.71 10.82 31.41 0.34 -6.37 16 25 S 0.31 5.64 22.40 -107.50 -2.41 3.23 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 30 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.43 4.72 8.96 -34.47 -0.31 4.41 16 32 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.25 7.20 -51.93 -0.37 0.88 16 37 H 0.05 0.97 7.07 -51.92 -0.37 0.60 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -33.34 356.50 -10.43 -43.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.42 Total: 5.34 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.79 Total: -28.25 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 1.09 Total: -52.37 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.00 Total: -36.51 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.67 Total: 14.63 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -3.01 Total: 48.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.34 -10.43 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271074004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.456 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds