Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33392 * 125.20293 * 2 1 4 4 C 1.38416 * 114.92034 * 179.75141 * 3 2 1 5 5 C 1.33390 * 114.92096 * 0.42862 * 4 3 2 6 6 S 1.76205 * 125.20335 * 179.86013 * 5 4 3 7 7 O 1.42103 * 106.40179 * 336.18234 * 6 5 4 8 8 O 1.42095 * 106.40086 * 203.25772 * 6 5 4 9 9 N 1.65604 * 107.21594 * 89.71873 * 6 5 4 10 10 C 1.39992 * 119.99959 * 65.00443 * 9 6 5 11 11 C 1.40428 * 125.97582 * 180.23225 * 10 9 6 12 12 C 1.35244 * 107.86169 * 180.14339 * 11 10 9 13 13 C 1.50703 * 126.06821 * 179.90447 * 12 11 10 14 14 N 1.34960 * 107.86266 * 359.63649 * 12 11 10 15 15 C 1.46498 * 125.97191 * 180.22991 * 14 12 11 16 16 C 1.50707 * 109.47366 * 90.00120 * 15 14 12 17 17 H 1.08005 * 119.99361 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00150 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99629 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99876 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47550 * 89.99783 * 20 18 16 22 22 H 1.48500 * 109.46867 * 209.99789 * 20 18 16 23 23 H 1.48503 * 109.47341 * 329.99518 * 20 18 16 24 24 N 1.31220 * 125.97468 * 359.97124 * 10 9 6 25 25 S 1.75880 * 125.20147 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47507 * 299.99966 * 1 2 3 28 28 H 1.08999 * 109.47577 * 59.99946 * 1 2 3 29 29 H 1.08006 * 122.53684 * 359.97438 * 3 2 1 30 30 H 1.08006 * 122.54045 * 180.27327 * 4 3 2 31 31 H 0.96999 * 119.99804 * 244.99536 * 9 6 5 32 32 H 1.08003 * 126.06914 * 0.02562 * 11 10 9 33 33 H 1.09002 * 109.47152 * 269.68518 * 13 12 11 34 34 H 1.09001 * 109.46980 * 149.68618 * 13 12 11 35 35 H 1.09004 * 109.47113 * 29.68599 * 13 12 11 36 36 H 1.09006 * 109.47531 * 210.00084 * 15 14 12 37 37 H 1.09008 * 109.47462 * 330.00263 * 15 14 12 38 38 H 0.97006 * 119.99820 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6378 0.8429 0.0054 5 6 3.9750 -0.4477 0.0008 6 16 5.6247 -1.0666 0.0023 7 8 6.4399 -0.0376 -0.5417 8 8 5.5619 -2.3778 -0.5416 9 7 6.0824 -1.2382 1.5846 10 6 5.4316 -2.1676 2.4046 11 6 5.7127 -2.4125 3.7585 12 6 4.8714 -3.3801 4.1885 13 6 4.8212 -3.9587 5.5791 14 7 4.0808 -3.7315 3.1527 15 6 3.0224 -4.7441 3.1828 16 6 1.7188 -4.0968 3.5737 17 1 1.6825 -3.0371 3.7795 18 6 0.5726 -4.8572 3.6685 19 7 -0.5650 -4.2922 4.0091 20 14 0.6358 -6.6900 3.3131 21 1 0.9312 -7.4277 4.5676 22 1 -0.6744 -7.1351 2.7741 23 1 1.7006 -6.9644 2.3150 24 7 4.4490 -2.9590 2.0439 25 16 2.5208 -1.4372 0.0006 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8668 2.0895 -0.0004 30 1 4.3720 1.6351 0.0104 31 1 6.8015 -0.6948 1.9431 32 1 6.4681 -1.9174 4.3508 33 1 5.4891 -4.8179 5.6395 34 1 3.8024 -4.2738 5.8050 35 1 5.1356 -3.2027 6.2987 36 1 2.9225 -5.1948 2.1953 37 1 3.2776 -5.5150 3.9099 38 1 -1.3713 -4.8273 4.0762 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271074004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = 12.183625 kcal Electronic energy + Delta-G solvation = -25431.571847 eV Core-core repulsion = 21721.718458 eV Total energy + Delta-G solvation = -3709.853390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14989 -39.04251 -38.40449 -37.17460 -36.84411 -35.16042 -33.13946 -32.91464 -32.78709 -28.90083 -28.13901 -27.81994 -24.60369 -24.33970 -22.25152 -21.80623 -20.99919 -19.65016 -19.18195 -18.97890 -18.61716 -17.83922 -17.17439 -16.95262 -16.46136 -16.14699 -15.71803 -15.45855 -15.01387 -14.95023 -14.47136 -14.22685 -14.19160 -13.89532 -13.71242 -13.66659 -13.46944 -13.37044 -13.34714 -13.30204 -13.27545 -13.03658 -12.79843 -12.60951 -12.46545 -12.30130 -11.86994 -11.69439 -11.64983 -11.37526 -10.85485 -10.06336 -9.74087 -9.48651 -9.17970 -8.36768 -6.45085 -0.93483 -0.46054 0.44664 0.84965 1.10296 1.30413 1.34264 1.39273 1.46507 1.55571 1.87376 2.08543 2.27824 2.52027 2.95747 3.33603 3.60345 3.73524 3.89192 4.18689 4.31421 4.38545 4.48987 4.55558 4.61488 4.61657 4.74937 4.79906 4.85491 4.92663 4.98554 5.02774 5.10420 5.25313 5.29160 5.39444 5.69308 5.93529 6.03127 6.39363 6.58017 6.89451 7.17771 8.78889 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005360 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.983804 B = 5222.461872 C = 6876.274496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.149 4.149 3 C -0.178 4.178 4 C 0.013 3.987 5 C -0.818 4.818 6 S 2.739 3.261 7 O -0.957 6.957 8 O -0.968 6.968 9 N -0.998 5.998 10 C 0.282 3.718 11 C -0.297 4.297 12 C 0.100 3.900 13 C -0.090 4.090 14 N -0.338 5.338 15 C 0.238 3.762 16 C -0.537 4.537 17 H 0.033 0.967 18 C 0.030 3.970 19 N -0.932 5.932 20 Si 0.933 3.067 21 H -0.250 1.250 22 H -0.281 1.281 23 H -0.251 1.251 24 N -0.353 5.353 25 S 0.204 5.796 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.182 0.818 30 H 0.181 0.819 31 H 0.450 0.550 32 H 0.183 0.817 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 8.611 -2.053 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.270 4.270 3 C -0.207 4.207 4 C -0.024 4.024 5 C -1.022 5.022 6 S 2.827 3.173 7 O -0.947 6.947 8 O -0.958 6.958 9 N -0.755 5.755 10 C 0.025 3.975 11 C -0.329 4.329 12 C -0.030 4.030 13 C -0.148 4.148 14 N -0.120 5.120 15 C 0.118 3.882 16 C -0.575 4.575 17 H 0.051 0.949 18 C -0.171 4.171 19 N -0.571 5.571 20 Si 0.756 3.244 21 H -0.174 1.174 22 H -0.206 1.206 23 H -0.175 1.175 24 N -0.183 5.183 25 S 0.472 5.528 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.199 0.801 30 H 0.198 0.802 31 H 0.290 0.710 32 H 0.200 0.800 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.384 6.241 -3.806 11.123 hybrid contribution -0.130 1.447 0.845 1.681 sum 8.253 7.688 -2.961 11.662 Atomic orbital electron populations 1.20571 0.85780 1.03525 1.05056 1.25746 1.02146 0.96932 1.02134 1.20568 0.92212 1.00771 1.07190 1.20334 0.97929 0.93886 0.90215 1.35385 1.26105 1.08133 1.32565 1.00456 0.72299 0.72817 0.71692 1.93578 1.66412 1.59025 1.75685 1.93587 1.86788 1.39327 1.76135 1.52375 1.46391 1.47101 1.29618 1.18883 0.94142 0.92593 0.91904 1.21040 1.10460 1.08020 0.93380 1.21735 0.91644 0.96684 0.92924 1.20591 1.03735 1.02595 0.87895 1.48383 1.27461 1.30311 1.05848 1.19792 0.83705 0.85721 0.98980 1.21152 0.92448 0.95711 1.48175 0.94863 1.25611 0.94292 1.03491 0.93670 1.70005 1.00432 1.38462 1.48166 0.85927 0.78732 0.79413 0.80366 1.17359 1.20630 1.17501 1.77322 1.17977 1.11728 1.11289 1.85389 0.93273 1.06844 1.67251 0.92324 0.88967 0.86967 0.80068 0.80195 0.70955 0.79968 0.88126 0.91666 0.87384 0.94113 0.90947 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 10.38 71.23 0.74 -1.51 16 2 C -0.15 -4.49 6.51 24.59 0.16 -4.33 16 3 C -0.18 -4.50 10.05 21.21 0.21 -4.28 16 4 C 0.01 0.35 9.84 21.21 0.21 0.56 16 5 C -0.82 -27.36 6.51 66.72 0.43 -26.92 16 6 S 2.74 90.56 5.64 -56.49 -0.32 90.24 16 7 O -0.96 -30.42 17.80 -128.00 -2.28 -32.70 16 8 O -0.97 -39.87 17.12 -128.00 -2.19 -42.06 16 9 N -1.00 -28.92 5.91 -54.61 -0.32 -29.24 16 10 C 0.28 10.21 7.72 133.39 1.03 11.24 16 11 C -0.30 -9.30 10.74 22.11 0.24 -9.07 16 12 C 0.10 3.52 6.92 41.39 0.29 3.81 16 13 C -0.09 -2.35 9.89 71.24 0.70 -1.65 16 14 N -0.34 -14.70 3.59 -338.42 -1.22 -15.92 16 15 C 0.24 10.99 4.88 85.64 0.42 11.41 16 16 C -0.54 -29.17 9.94 25.60 0.25 -28.92 16 17 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 18 C 0.03 1.59 5.47 84.66 0.46 2.06 16 19 N -0.93 -54.29 13.96 21.45 0.30 -53.99 16 20 Si 0.93 40.09 27.47 68.60 1.88 41.98 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 24 N -0.35 -15.56 10.82 -54.54 -0.59 -16.15 16 25 S 0.20 7.83 22.40 -56.49 -1.27 6.57 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 31 H 0.45 8.84 8.96 -96.75 -0.87 7.97 16 32 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.99 7.71 -2.39 -0.02 1.97 16 35 H 0.11 2.16 8.14 -2.38 -0.02 2.15 16 36 H 0.04 1.96 7.20 -2.38 -0.02 1.94 16 37 H 0.07 2.94 7.07 -2.38 -0.02 2.92 16 38 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -76.99 356.50 -0.67 -77.66 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.18 Total: 21.23 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 5.15 Total: -47.62 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -1.83 Total: -115.30 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -4.47 Total: -74.76 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.98 kcal Atomic # 16 Polarization: 98.39 SS G_CDS: -1.58 Total: 96.81 kcal Total: -76.99 -0.67 -77.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271074004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.840 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds