Wall clock time and date at job start Sat Apr 11 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38422 * 122.54138 * 2 1 4 4 C 1.33383 * 114.92120 * 180.02562 * 3 2 1 5 5 S 1.76204 * 125.20498 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.39598 * 336.45300 * 5 4 3 7 7 O 1.42098 * 106.40117 * 203.53888 * 5 4 3 8 8 N 1.65594 * 107.22039 * 89.99323 * 5 4 3 9 9 C 1.39989 * 119.99656 * 65.00173 * 8 5 4 10 10 C 1.40432 * 125.97226 * 180.02562 * 9 8 5 11 11 C 1.35251 * 107.86019 * 179.70499 * 10 9 8 12 12 N 1.34962 * 107.86128 * 0.42675 * 11 10 9 13 13 C 1.46500 * 125.97410 * 179.83595 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71196 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31219 * 125.97824 * 359.97438 * 9 8 5 23 23 S 1.75887 * 109.59752 * 0.24118 * 4 3 2 24 24 C 1.33397 * 122.53866 * 180.02562 * 2 1 3 25 25 C 1.50697 * 125.20008 * 359.95081 * 24 2 1 26 26 H 1.09008 * 109.46875 * 89.97594 * 1 2 3 27 27 H 1.08994 * 109.47241 * 209.97469 * 1 2 3 28 28 H 1.08994 * 109.47177 * 329.97909 * 1 2 3 29 29 H 1.08000 * 122.53440 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00453 * 245.00506 * 8 5 4 31 31 H 1.07997 * 126.07138 * 0.02562 * 10 9 8 32 32 H 1.07992 * 126.07316 * 180.25997 * 11 10 9 33 33 H 1.09004 * 109.47078 * 4.71958 * 13 12 11 34 34 H 1.08993 * 109.47364 * 244.71729 * 13 12 11 35 35 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 36 36 H 1.09009 * 109.47384 * 89.99806 * 25 24 2 37 37 H 1.09008 * 109.46766 * 209.99526 * 25 24 2 38 38 H 1.08993 * 109.47572 * 329.99520 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9900 -0.0005 5 16 4.7714 2.2824 -0.0013 6 8 4.1272 3.4260 -0.5459 7 8 5.9605 1.7270 -0.5461 8 7 5.1052 2.6424 1.5802 9 6 5.7196 1.6887 2.4004 10 6 6.0577 1.8588 3.7527 11 6 6.6248 0.7100 4.1862 12 7 6.6555 -0.1534 3.1494 13 6 7.1917 -1.5164 3.1801 14 6 6.1324 -2.4835 2.7176 15 1 5.1575 -2.1192 2.4292 16 6 6.4079 -3.8333 2.6626 17 7 7.5968 -4.2764 3.0087 18 14 5.0951 -5.0320 2.0886 19 1 5.6405 -6.4130 2.1141 20 1 3.9189 -4.9474 2.9913 21 1 4.6823 -4.6883 0.7042 22 7 6.0793 0.4792 2.0404 23 16 3.9386 -0.7305 -0.0081 24 6 2.2245 -1.1246 -0.0005 25 6 1.6536 -2.5192 -0.0001 26 1 -0.3633 0.0004 -1.0278 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5141 29 1 1.7965 2.1463 -0.0004 30 1 4.8750 3.5139 1.9382 31 1 5.8897 2.7473 4.3433 32 1 6.9907 0.5185 5.1840 33 1 7.4918 -1.7659 4.1978 34 1 8.0564 -1.5817 2.5199 35 1 8.2786 -3.6541 3.3065 36 1 1.5152 -2.8556 -1.0277 37 1 2.3401 -3.1926 0.5133 38 1 0.6928 -2.5184 0.5145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271403613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:04 Heat of formation + Delta-G solvation = 7.262605 kcal Electronic energy + Delta-G solvation = -25582.920915 eV Core-core repulsion = 21872.854134 eV Total energy + Delta-G solvation = -3710.066781 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07312 -39.57065 -38.47272 -37.20411 -36.82335 -35.48406 -33.44564 -32.39306 -30.99188 -30.46716 -28.08528 -26.74292 -25.09356 -24.13251 -22.50672 -22.21779 -20.51550 -19.57782 -19.22033 -18.96847 -18.61471 -18.29316 -17.32688 -16.91149 -16.20777 -16.01808 -15.66767 -15.44770 -15.16810 -15.02161 -14.50543 -14.39803 -14.31213 -13.79520 -13.65433 -13.62863 -13.42886 -13.36084 -13.32374 -13.21004 -13.14062 -12.94379 -12.77620 -12.65017 -12.50886 -12.23430 -12.00200 -11.62470 -11.39036 -11.00073 -10.64314 -9.98044 -9.90595 -9.39484 -9.24592 -8.70236 -6.45598 -0.95661 -0.47229 0.45654 0.88202 1.12223 1.28993 1.45748 1.50364 1.53250 1.72463 1.86535 2.08059 2.47692 2.50775 3.07633 3.31506 3.59367 3.73449 4.00155 4.10187 4.17637 4.40782 4.46899 4.51176 4.57671 4.69972 4.71814 4.76416 4.84403 4.87692 4.93873 4.98683 5.03700 5.31044 5.52601 5.54172 5.75007 5.90305 6.01480 6.36823 6.47864 6.88310 7.28802 8.66766 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.006345 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.241488 B = 4411.868166 C = 6505.079192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.147 4.147 3 C 0.015 3.985 4 C -0.812 4.812 5 S 2.736 3.264 6 O -0.957 6.957 7 O -0.972 6.972 8 N -0.997 5.997 9 C 0.271 3.729 10 C -0.288 4.288 11 C 0.065 3.935 12 N -0.339 5.339 13 C 0.257 3.743 14 C -0.607 4.607 15 H 0.061 0.939 16 C -0.018 4.018 17 N -0.931 5.931 18 Si 1.094 2.906 19 H -0.280 1.280 20 H -0.263 1.263 21 H -0.270 1.270 22 N -0.342 5.342 23 S 0.202 5.798 24 C -0.157 4.157 25 C -0.096 4.096 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.178 0.822 30 H 0.450 0.550 31 H 0.186 0.814 32 H 0.207 0.793 33 H 0.057 0.943 34 H 0.009 0.991 35 H 0.260 0.740 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 11.152 -0.645 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C -0.022 4.022 4 C -1.016 5.016 5 S 2.825 3.175 6 O -0.947 6.947 7 O -0.962 6.962 8 N -0.755 5.755 9 C 0.014 3.986 10 C -0.320 4.320 11 C -0.083 4.083 12 N -0.121 5.121 13 C 0.138 3.862 14 C -0.645 4.645 15 H 0.079 0.921 16 C -0.218 4.218 17 N -0.568 5.568 18 Si 0.915 3.085 19 H -0.205 1.205 20 H -0.187 1.187 21 H -0.195 1.195 22 N -0.173 5.173 23 S 0.472 5.528 24 C -0.277 4.277 25 C -0.154 4.154 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.195 0.805 30 H 0.291 0.709 31 H 0.203 0.797 32 H 0.224 0.776 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.016 7.973 -2.707 15.502 hybrid contribution -0.581 2.771 1.376 3.148 sum -13.597 10.744 -1.331 17.381 Atomic orbital electron populations 1.20627 0.86255 1.04239 1.03662 1.19365 0.99695 0.90433 1.06383 1.20187 0.89668 1.01548 0.90836 1.35295 1.16452 1.17746 1.32151 1.00487 0.72782 0.72397 0.71800 1.93575 1.77215 1.48243 1.75698 1.93598 1.46425 1.79968 1.76191 1.52336 1.71335 1.22199 1.29603 1.19060 0.98053 0.89304 0.92175 1.21333 1.15443 1.02167 0.93086 1.23195 1.00117 0.89576 0.95457 1.48555 1.44643 1.12827 1.06061 1.19440 0.94191 0.74672 0.97912 1.22336 1.00167 0.93494 1.48524 0.92073 1.26996 1.01287 0.99111 0.94356 1.70931 1.04389 1.38679 1.42781 0.83260 0.73450 0.74295 0.77446 1.20474 1.18745 1.19547 1.77418 1.21948 1.06373 1.11525 1.85728 1.04249 0.95217 1.67561 1.25559 0.96821 1.01625 1.03739 1.20662 1.02025 0.88114 1.04594 0.89695 0.90168 0.89847 0.80489 0.70937 0.79670 0.77624 0.92528 0.97309 0.93007 0.88122 0.92265 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.87 71.24 0.70 -0.69 16 2 C -0.15 -3.69 5.80 -20.92 -0.12 -3.81 16 3 C 0.01 0.40 9.64 21.21 0.20 0.60 16 4 C -0.81 -27.54 6.51 66.72 0.43 -27.11 16 5 S 2.74 93.19 5.64 -56.49 -0.32 92.87 16 6 O -0.96 -31.13 17.80 -128.00 -2.28 -33.41 16 7 O -0.97 -42.07 17.12 -128.00 -2.19 -44.26 16 8 N -1.00 -29.15 5.91 -54.61 -0.32 -29.47 16 9 C 0.27 9.78 7.72 133.39 1.03 10.81 16 10 C -0.29 -8.56 10.83 22.12 0.24 -8.32 16 11 C 0.07 2.15 11.44 83.52 0.96 3.11 16 12 N -0.34 -14.85 3.67 -351.84 -1.29 -16.14 16 13 C 0.26 12.71 5.57 85.64 0.48 13.18 16 14 C -0.61 -32.80 9.24 25.60 0.24 -32.56 16 15 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 16 C -0.02 -0.99 5.46 84.65 0.46 -0.52 16 17 N -0.93 -53.83 13.65 21.45 0.29 -53.54 16 18 Si 1.09 48.00 29.90 68.60 2.05 50.05 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 N -0.34 -15.32 10.68 -54.54 -0.58 -15.90 16 23 S 0.20 7.88 22.42 -56.49 -1.27 6.61 16 24 C -0.16 -4.64 6.51 24.59 0.16 -4.48 16 25 C -0.10 -2.22 10.05 71.24 0.72 -1.50 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.08 1.07 6.60 -2.39 -0.02 1.06 16 28 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 29 H 0.18 3.60 8.05 -2.91 -0.02 3.58 16 30 H 0.45 8.84 8.95 -96.75 -0.87 7.97 16 31 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.21 5.00 8.06 -2.91 -0.02 4.98 16 33 H 0.06 2.64 7.94 -2.39 -0.02 2.63 16 34 H 0.01 0.49 8.00 -2.39 -0.02 0.47 16 35 H 0.26 14.90 7.22 -92.71 -0.67 14.24 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.90 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.11 1.87 6.64 -2.39 -0.02 1.86 16 Total: -1.00 -76.80 356.63 -0.07 -76.86 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.34 Total: 17.61 kcal Atomic # 6 Polarization: -56.79 SS G_CDS: 5.50 Total: -51.30 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -1.90 Total: -115.05 kcal Atomic # 8 Polarization: -73.20 SS G_CDS: -4.47 Total: -77.67 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.05 Total: 50.05 kcal Atomic # 16 Polarization: 101.07 SS G_CDS: -1.59 Total: 99.49 kcal Total: -76.80 -0.07 -76.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271403613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.124 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds