Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00167 * 2 1 4 4 H 1.48507 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47401 * 300.00303 * 3 2 1 6 6 H 1.48504 * 109.47165 * 60.00292 * 3 2 1 7 7 C 1.37881 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99540 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47511 * 179.97438 * 9 7 2 11 11 N 1.46492 * 109.47570 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00458 * 179.97438 * 11 10 9 13 13 O 1.21365 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.49344 * 120.00386 * 179.97438 * 12 11 10 15 15 O 1.21375 * 119.99982 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00140 * 180.27984 * 14 12 11 17 17 C 1.39769 * 120.00294 * 175.24026 * 16 14 12 18 18 C 1.38905 * 120.07977 * 34.69707 * 17 16 14 19 19 C 1.38101 * 119.93552 * 179.77324 * 18 17 16 20 20 C 1.38309 * 120.09766 * 0.50749 * 19 18 17 21 21 N 1.48023 * 119.92094 * 179.72179 * 20 19 18 22 22 O 1.21793 * 120.00044 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99899 * 0.02562 * 21 20 19 24 24 C 1.38264 * 120.16343 * 359.74863 * 20 19 18 25 25 C 1.38219 * 120.06179 * 359.97438 * 24 20 19 26 26 Cl 1.73594 * 120.05203 * 179.97438 * 25 24 20 27 27 H 0.97001 * 119.99486 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47466 * 59.99451 * 9 7 2 29 29 H 1.09008 * 109.47180 * 299.99804 * 9 7 2 30 30 H 1.09000 * 109.47070 * 59.99372 * 10 9 7 31 31 H 1.09000 * 109.47021 * 300.00433 * 10 9 7 32 32 H 0.97002 * 119.99834 * 0.02562 * 11 10 9 33 33 H 0.97005 * 119.99846 * 355.23594 * 16 14 12 34 34 H 1.08005 * 120.03720 * 0.02648 * 18 17 16 35 35 H 1.08004 * 119.95349 * 180.23007 * 19 18 17 36 36 H 1.07999 * 119.97207 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0027 11 7 1.5127 -4.9308 -0.0033 12 6 2.1864 -6.0981 -0.0047 13 8 3.4001 -6.0981 -0.0051 14 6 1.4397 -7.3914 -0.0047 15 8 0.2259 -7.3914 -0.0038 16 7 2.1135 -8.5587 -0.0004 17 6 1.4180 -9.7668 0.1001 18 6 0.1700 -9.9032 -0.4944 19 6 -0.5126 -11.0998 -0.3972 20 6 0.0400 -12.1589 0.2999 21 7 -0.6978 -13.4377 0.4068 22 8 -0.2128 -14.3711 1.0207 23 8 -1.7899 -13.5565 -0.1192 24 6 1.2796 -12.0259 0.8977 25 6 1.9711 -10.8331 0.7998 26 17 3.5271 -10.6662 1.5511 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8719 -3.6052 0.8872 31 1 2.8718 -3.6037 -0.8926 32 1 0.5426 -4.9308 -0.0033 33 1 3.0812 -8.5603 -0.0672 34 1 -0.2644 -9.0756 -1.0356 35 1 -1.4813 -11.2074 -0.8625 36 1 1.7083 -12.8550 1.4410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273136600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = -70.485799 kcal Electronic energy + Delta-G solvation = -25405.771347 eV Core-core repulsion = 21111.703470 eV Total energy + Delta-G solvation = -4294.067877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.36265 -42.49600 -40.87023 -39.62634 -37.93578 -37.73026 -37.15274 -36.33518 -34.85335 -32.56044 -32.16953 -31.72024 -28.28097 -27.13880 -25.46641 -24.77866 -23.51433 -22.80767 -21.72550 -20.66078 -20.30975 -19.71744 -19.01619 -18.67740 -18.57649 -17.71299 -17.52035 -16.88484 -16.64971 -16.51158 -16.40616 -15.90734 -15.43187 -15.18976 -15.12566 -14.84722 -14.54631 -14.32483 -13.41957 -13.26399 -13.06027 -12.97979 -12.95209 -12.78211 -12.59470 -12.52550 -12.33738 -12.32844 -12.31021 -12.18272 -11.70452 -11.43321 -10.95383 -10.63258 -10.49871 -10.27828 -10.02844 -8.24533 -6.34893 -1.50470 -0.49289 -0.18580 0.10889 0.22485 0.62325 0.91113 1.41778 1.43788 1.55723 1.74648 1.98334 2.22691 2.42822 3.05807 3.11200 3.12648 3.30498 3.39831 3.52281 3.88058 4.26201 4.35828 4.36331 4.44876 4.48191 4.61614 4.81268 4.94739 4.98430 5.20018 5.38996 5.48647 5.55076 5.76261 6.04887 6.12158 6.33874 6.39923 6.71955 6.81231 7.34871 8.87414 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.001944 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.376498 B =14399.053942 C =15399.578499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.137 3.863 11 N -0.681 5.681 12 C 0.506 3.494 13 O -0.539 6.539 14 C 0.528 3.472 15 O -0.495 6.495 16 N -0.637 5.637 17 C 0.208 3.792 18 C -0.111 4.111 19 C -0.016 4.016 20 C -0.059 4.059 21 N 0.034 4.966 22 O -0.171 6.171 23 O -0.169 6.169 24 C -0.017 4.017 25 C -0.066 4.066 26 Cl -0.021 7.021 27 H 0.265 0.735 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.418 0.582 33 H 0.437 0.563 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -25.080 -0.133 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.332 5.332 12 C 0.286 3.714 13 O -0.417 6.417 14 C 0.310 3.690 15 O -0.368 6.368 16 N -0.285 5.285 17 C 0.110 3.890 18 C -0.132 4.132 19 C -0.036 4.036 20 C -0.144 4.144 21 N 0.551 4.449 22 O -0.385 6.385 23 O -0.384 6.384 24 C -0.037 4.037 25 C -0.096 4.096 26 Cl 0.008 6.992 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.254 0.746 33 H 0.279 0.721 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.551 -24.217 -0.103 24.476 hybrid contribution 0.135 0.685 0.141 0.712 sum 3.685 -23.532 0.038 23.819 Atomic orbital electron populations 1.70071 1.07603 1.27918 1.51081 1.25883 0.95755 1.03186 0.94567 0.85398 0.79140 0.78840 0.77670 1.18591 1.20513 1.20589 1.21481 0.93788 0.91557 1.51267 0.91669 1.19190 0.94385 0.91809 0.96645 1.21532 0.95083 0.80381 1.01531 1.46035 1.12117 1.05220 1.69851 1.19768 0.87431 0.85037 0.79187 1.90785 1.13660 1.87489 1.49767 1.20209 0.87385 0.85005 0.76385 1.90799 1.13395 1.87218 1.45348 1.43204 1.12881 1.02562 1.69815 1.17928 0.93125 0.84609 0.93315 1.21410 0.93285 0.98454 1.00066 1.21244 1.01084 0.88823 0.92399 1.20994 0.96126 0.85760 1.11502 1.43657 1.00581 1.02613 0.98086 1.94550 1.71102 1.32024 1.40871 1.94561 1.07156 1.89092 1.47567 1.20757 0.90613 0.97435 0.94900 1.20397 0.92325 0.94687 1.02232 1.98451 1.23290 1.97581 1.79830 0.92618 0.97153 0.97290 0.91756 0.91561 0.74553 0.72103 0.80729 0.80058 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.78 13.29 21.45 0.28 -52.50 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.40 9.11 25.60 0.23 -28.17 16 8 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 0.80 5.09 29.85 0.15 0.96 16 10 C 0.14 5.10 5.61 86.38 0.48 5.59 16 11 N -0.68 -20.73 5.55 -464.53 -2.58 -23.30 16 12 C 0.51 13.84 7.89 87.24 0.69 14.53 16 13 O -0.54 -16.73 16.48 -3.29 -0.05 -16.78 16 14 C 0.53 11.45 7.73 87.24 0.67 12.13 16 15 O -0.49 -11.66 13.89 -3.32 -0.05 -11.70 16 16 N -0.64 -10.60 5.03 -304.76 -1.53 -12.13 16 17 C 0.21 3.07 6.30 38.22 0.24 3.31 16 18 C -0.11 -1.53 8.70 22.40 0.19 -1.34 16 19 C -0.02 -0.20 9.55 22.25 0.21 0.01 16 20 C -0.06 -0.88 6.85 36.40 0.25 -0.63 16 21 N 0.03 0.66 4.45 -46.40 -0.21 0.45 16 22 O -0.17 -3.59 18.44 18.90 0.35 -3.24 16 23 O -0.17 -3.59 18.44 18.89 0.35 -3.24 16 24 C -0.02 -0.21 9.33 22.27 0.21 0.00 16 25 C -0.07 -0.87 6.34 22.45 0.14 -0.72 16 26 Cl -0.02 -0.26 27.96 -2.72 -0.08 -0.34 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.42 11.91 7.94 -92.71 -0.74 11.18 16 33 H 0.44 6.51 7.56 -92.70 -0.70 5.81 16 34 H 0.18 2.49 6.20 -2.91 -0.02 2.47 16 35 H 0.18 1.68 7.60 -2.91 -0.02 1.66 16 36 H 0.18 1.76 7.60 -2.91 -0.02 1.74 16 Total: -1.00 -62.01 347.87 2.21 -59.80 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.25 Total: 12.71 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 3.94 Total: 6.38 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.03 Total: -87.48 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: 0.60 Total: -34.97 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -62.01 2.21 -59.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273136600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.681 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds