Wall clock time and date at job start Sat Apr 11 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46806 * 206.99428 * 3 2 1 5 5 C 1.36943 * 119.99798 * 273.47550 * 4 3 2 6 6 H 1.07999 * 119.99721 * 180.92840 * 5 4 3 7 7 C 1.38811 * 120.00103 * 0.92370 * 5 4 3 8 8 N 1.31615 * 120.00234 * 26.48968 * 7 5 4 9 9 Si 1.86798 * 119.99786 * 206.49282 * 7 5 4 10 10 H 1.48503 * 109.47424 * 84.98804 * 9 7 5 11 11 H 1.48503 * 109.46984 * 204.99010 * 9 7 5 12 12 H 1.48504 * 109.47264 * 324.98633 * 9 7 5 13 13 S 1.65596 * 119.99924 * 93.47142 * 4 3 2 14 14 O 1.42108 * 106.40074 * 156.46039 * 13 4 3 15 15 O 1.42097 * 106.40269 * 23.54036 * 13 4 3 16 16 C 1.76200 * 107.21921 * 270.00081 * 13 4 3 17 17 C 1.38235 * 119.99761 * 269.72439 * 16 13 4 18 18 C 1.38236 * 119.99833 * 179.76488 * 17 16 13 19 19 C 1.38235 * 119.99968 * 0.49239 * 18 17 16 20 20 C 1.50700 * 120.00190 * 179.76491 * 19 18 17 21 21 C 1.52994 * 109.47444 * 270.02247 * 20 19 18 22 22 C 1.52998 * 109.47455 * 179.97438 * 21 20 19 23 23 Cl 1.80295 * 109.47137 * 179.97438 * 22 21 20 24 24 C 1.38240 * 119.99769 * 359.78275 * 19 18 17 25 25 C 1.38226 * 120.00023 * 90.00027 * 16 13 4 26 26 H 4.40642 * 5.51426 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46745 * 86.99793 * 3 2 1 28 28 H 1.08997 * 109.47223 * 326.99212 * 3 2 1 29 29 H 0.96998 * 120.00196 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.00020 * 359.97438 * 17 16 13 31 31 H 1.08005 * 119.99760 * 180.25348 * 18 17 16 32 32 H 1.09001 * 109.46608 * 30.01991 * 20 19 18 33 33 H 1.08997 * 109.46876 * 150.01717 * 20 19 18 34 34 H 1.09003 * 109.46697 * 299.99941 * 21 20 19 35 35 H 1.09000 * 109.47167 * 59.99488 * 21 20 19 36 36 H 1.08992 * 109.46790 * 300.00029 * 22 21 20 37 37 H 1.09004 * 109.46553 * 59.99859 * 22 21 20 38 38 H 1.07998 * 119.99794 * 179.97438 * 24 19 18 39 39 H 1.08000 * 120.00362 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2317 0.6270 5 6 3.2937 2.3656 -0.1240 6 1 3.6674 3.2690 0.3350 7 6 2.9755 2.3540 -1.4751 8 7 2.0762 1.5086 -1.9321 9 14 3.8237 3.5381 -2.6446 10 1 5.1150 2.9549 -3.0892 11 1 2.9549 3.7750 -3.8254 12 1 4.0754 4.8257 -1.9490 13 16 3.4916 1.2519 2.2437 14 8 4.4153 2.3144 2.4370 15 8 3.7662 -0.0931 2.6107 16 6 2.0202 1.7101 3.0979 17 6 1.7567 3.0426 3.3547 18 6 0.5999 3.4025 4.0206 19 6 -0.2883 2.4292 4.4385 20 6 -1.5467 2.8212 5.1691 21 6 -1.2731 2.8561 6.6740 22 6 -2.5505 3.2546 7.4156 23 17 -2.2281 3.2950 9.1890 24 6 -0.0219 1.0963 4.1866 25 6 1.1322 0.7369 3.5161 26 1 -1.0502 -0.0002 -0.0003 27 1 3.0094 -0.0530 -1.0263 28 1 3.0098 -0.8609 0.5598 29 1 1.8536 1.5007 -2.8762 30 1 2.4529 3.8027 3.0322 31 1 0.3921 4.4439 4.2177 32 1 -1.8682 3.8078 4.8353 33 1 -2.3304 2.0933 4.9591 34 1 -0.9515 1.8695 7.0077 35 1 -0.4893 3.5839 6.8839 36 1 -2.8716 4.2412 7.0818 37 1 -3.3345 2.5270 7.2056 38 1 -0.7156 0.3359 4.5135 39 1 1.3405 -0.3045 3.3197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281122757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:23 Heat of formation + Delta-G solvation = -0.212769 kcal Electronic energy + Delta-G solvation = -24934.000310 eV Core-core repulsion = 21189.272915 eV Total energy + Delta-G solvation = -3744.727395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.02573 -36.50829 -36.35476 -35.95847 -34.80801 -34.52408 -32.09616 -31.15751 -30.82586 -30.56498 -26.65404 -26.41388 -23.85808 -22.47728 -22.38915 -20.91699 -18.60956 -18.10362 -17.35999 -16.66775 -16.34114 -15.97537 -15.37741 -14.98146 -14.63290 -14.49324 -14.22145 -14.08537 -13.60179 -13.40273 -13.19391 -13.14531 -12.78340 -12.62039 -12.38489 -11.86780 -11.71200 -11.53347 -11.33184 -11.27488 -11.02135 -10.88298 -10.84336 -10.70394 -10.67183 -10.60747 -10.53006 -10.31409 -9.95936 -9.60433 -9.30738 -8.94820 -8.57772 -8.55136 -8.32815 -6.63633 -3.97320 1.28399 1.67834 1.77911 2.00386 3.07622 3.14350 3.19048 3.68274 3.95199 3.98578 4.09063 4.37712 4.48372 4.53062 4.66165 4.88539 4.91629 5.02200 5.09991 5.18806 5.21014 5.31215 5.49590 5.50400 5.55505 5.76992 5.78516 5.93848 6.04325 6.21461 6.25000 6.42031 6.60721 6.73129 6.77535 6.80015 6.94870 7.12887 7.26866 7.34403 8.12820 8.55043 8.82585 8.95837 10.30415 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002886 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.843470 B = 9699.637910 C = 9795.548222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.114 4.114 3 C 0.226 3.774 4 N -0.798 5.798 5 C -0.248 4.248 6 H 0.122 0.878 7 C 0.029 3.971 8 N -0.824 5.824 9 Si 0.931 3.069 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.545 3.455 14 O -0.981 6.981 15 O -0.995 6.995 16 C -0.658 4.658 17 C -0.023 4.023 18 C -0.143 4.143 19 C -0.058 4.058 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.030 4.030 23 Cl -0.191 7.191 24 C -0.142 4.142 25 C -0.023 4.023 26 H 0.196 0.804 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.276 0.724 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 1.790 8.324 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.116 4.116 3 C 0.101 3.899 4 N -0.620 5.620 5 C -0.394 4.394 6 H 0.140 0.860 7 C -0.183 4.183 8 N -0.463 5.463 9 Si 0.756 3.244 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.189 1.189 13 S 2.642 3.358 14 O -0.971 6.971 15 O -0.985 6.985 16 C -0.736 4.736 17 C -0.042 4.042 18 C -0.162 4.162 19 C -0.058 4.058 20 C -0.117 4.117 21 C -0.163 4.163 22 C -0.093 4.093 23 Cl -0.165 7.165 24 C -0.161 4.161 25 C -0.042 4.042 26 H 0.213 0.787 27 H 0.144 0.856 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.161 1.472 8.979 12.223 hybrid contribution -1.135 0.850 -0.460 1.491 sum -9.296 2.323 8.519 12.822 Atomic orbital electron populations 1.24224 0.95313 1.03760 1.05348 1.23549 0.94664 0.97126 0.96275 1.18791 0.83759 0.86048 1.01348 1.55516 1.71815 1.14858 1.19849 1.20097 1.34910 0.93992 0.90358 0.86042 1.25511 0.95677 0.98496 0.98568 1.70252 1.24862 1.35036 1.16153 0.85849 0.79308 0.80179 0.79024 1.19596 1.20820 1.18905 1.10671 0.78263 0.73173 0.73669 1.93369 1.62148 1.55953 1.85615 1.93359 1.85651 1.36233 1.83255 1.32443 1.26485 1.00308 1.14358 1.20852 0.95514 0.94912 0.92906 1.21056 0.95294 0.98647 1.01182 1.19780 0.95368 0.93716 0.96955 1.20574 0.95460 1.02483 0.93182 1.21908 0.96631 1.03756 0.94041 1.24419 1.00140 1.04699 0.80010 1.98723 1.96808 1.99353 1.21612 1.21021 0.98152 0.95288 1.01628 1.20796 0.92052 0.98778 0.92614 0.78700 0.85649 0.90211 0.91355 0.85035 0.86294 0.90653 0.90668 0.90371 0.90362 0.88881 0.88895 0.86369 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.41 19.25 29.55 0.57 -4.84 16 2 C -0.11 -2.48 11.65 -37.12 -0.43 -2.92 16 3 C 0.23 4.96 5.45 -6.82 -0.04 4.92 16 4 N -0.80 -18.51 2.88 -62.77 -0.18 -18.69 16 5 C -0.25 -5.90 9.45 -15.06 -0.14 -6.05 16 6 H 0.12 2.86 7.29 -52.49 -0.38 2.48 16 7 C 0.03 0.66 4.99 -17.43 -0.09 0.57 16 8 N -0.82 -19.18 9.01 55.49 0.50 -18.68 16 9 Si 0.93 18.13 29.63 -169.99 -5.04 13.10 16 10 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 11 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 13 S 2.54 58.20 5.65 -107.50 -0.61 57.60 16 14 O -0.98 -24.32 16.08 -57.17 -0.92 -25.24 16 15 O -1.00 -23.82 15.85 -57.17 -0.91 -24.73 16 16 C -0.66 -13.52 5.97 -39.59 -0.24 -13.75 16 17 C -0.02 -0.43 9.52 -39.58 -0.38 -0.81 16 18 C -0.14 -2.26 9.70 -39.58 -0.38 -2.64 16 19 C -0.06 -0.83 5.13 -104.62 -0.54 -1.37 16 20 C -0.08 -0.79 5.34 -27.89 -0.15 -0.94 16 21 C -0.13 -1.13 5.32 -26.74 -0.14 -1.27 16 22 C -0.03 -0.22 6.66 37.16 0.25 0.03 16 23 Cl -0.19 -1.83 29.15 -51.86 -1.51 -3.34 16 24 C -0.14 -2.23 9.70 -39.58 -0.38 -2.61 16 25 C -0.02 -0.44 9.52 -39.59 -0.38 -0.81 16 26 H 0.20 3.26 7.80 -54.08 -0.42 2.83 16 27 H 0.13 2.80 6.05 -51.93 -0.31 2.49 16 28 H 0.08 1.64 6.94 -51.93 -0.36 1.28 16 29 H 0.28 6.08 8.31 -40.82 -0.34 5.74 16 30 H 0.13 2.45 7.61 -52.48 -0.40 2.05 16 31 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.13 2.35 7.62 -52.49 -0.40 1.95 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -28.73 363.71 -10.44 -39.17 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.79 Total: 7.80 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: -2.47 Total: -32.47 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.32 Total: -37.37 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -1.83 Total: -49.97 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.10 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.61 Total: 57.60 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.51 Total: -3.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.73 -10.44 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281122757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds