Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46806 * 206.99428 * 3 2 1 5 5 C 1.36943 * 119.99798 * 273.47550 * 4 3 2 6 6 H 1.07999 * 119.99721 * 180.92840 * 5 4 3 7 7 C 1.38811 * 120.00103 * 0.92370 * 5 4 3 8 8 N 1.31615 * 120.00234 * 26.48968 * 7 5 4 9 9 Si 1.86798 * 119.99786 * 206.49282 * 7 5 4 10 10 H 1.48503 * 109.47424 * 84.98804 * 9 7 5 11 11 H 1.48503 * 109.46984 * 204.99010 * 9 7 5 12 12 H 1.48504 * 109.47264 * 324.98633 * 9 7 5 13 13 S 1.65596 * 119.99924 * 93.47142 * 4 3 2 14 14 O 1.42108 * 106.40074 * 156.46039 * 13 4 3 15 15 O 1.42097 * 106.40269 * 23.54036 * 13 4 3 16 16 C 1.76200 * 107.21921 * 270.00081 * 13 4 3 17 17 C 1.38235 * 119.99761 * 269.72439 * 16 13 4 18 18 C 1.38236 * 119.99833 * 179.76488 * 17 16 13 19 19 C 1.38235 * 119.99968 * 0.49239 * 18 17 16 20 20 C 1.50700 * 120.00190 * 179.76491 * 19 18 17 21 21 C 1.52994 * 109.47444 * 270.02247 * 20 19 18 22 22 C 1.52998 * 109.47455 * 179.97438 * 21 20 19 23 23 Cl 1.80295 * 109.47137 * 179.97438 * 22 21 20 24 24 C 1.38240 * 119.99769 * 359.78275 * 19 18 17 25 25 C 1.38226 * 120.00023 * 90.00027 * 16 13 4 26 26 H 4.40642 * 5.51426 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46745 * 86.99793 * 3 2 1 28 28 H 1.08997 * 109.47223 * 326.99212 * 3 2 1 29 29 H 0.96998 * 120.00196 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.00020 * 359.97438 * 17 16 13 31 31 H 1.08005 * 119.99760 * 180.25348 * 18 17 16 32 32 H 1.09001 * 109.46608 * 30.01991 * 20 19 18 33 33 H 1.08997 * 109.46876 * 150.01717 * 20 19 18 34 34 H 1.09003 * 109.46697 * 299.99941 * 21 20 19 35 35 H 1.09000 * 109.47167 * 59.99488 * 21 20 19 36 36 H 1.08992 * 109.46790 * 300.00029 * 22 21 20 37 37 H 1.09004 * 109.46553 * 59.99859 * 22 21 20 38 38 H 1.07998 * 119.99794 * 179.97438 * 24 19 18 39 39 H 1.08000 * 120.00362 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2317 0.6270 5 6 3.2937 2.3656 -0.1240 6 1 3.6674 3.2690 0.3350 7 6 2.9755 2.3540 -1.4751 8 7 2.0762 1.5086 -1.9321 9 14 3.8237 3.5381 -2.6446 10 1 5.1150 2.9549 -3.0892 11 1 2.9549 3.7750 -3.8254 12 1 4.0754 4.8257 -1.9490 13 16 3.4916 1.2519 2.2437 14 8 4.4153 2.3144 2.4370 15 8 3.7662 -0.0931 2.6107 16 6 2.0202 1.7101 3.0979 17 6 1.7567 3.0426 3.3547 18 6 0.5999 3.4025 4.0206 19 6 -0.2883 2.4292 4.4385 20 6 -1.5467 2.8212 5.1691 21 6 -1.2731 2.8561 6.6740 22 6 -2.5505 3.2546 7.4156 23 17 -2.2281 3.2950 9.1890 24 6 -0.0219 1.0963 4.1866 25 6 1.1322 0.7369 3.5161 26 1 -1.0502 -0.0002 -0.0003 27 1 3.0094 -0.0530 -1.0263 28 1 3.0098 -0.8609 0.5598 29 1 1.8536 1.5007 -2.8762 30 1 2.4529 3.8027 3.0322 31 1 0.3921 4.4439 4.2177 32 1 -1.8682 3.8078 4.8353 33 1 -2.3304 2.0933 4.9591 34 1 -0.9515 1.8695 7.0077 35 1 -0.4893 3.5839 6.8839 36 1 -2.8716 4.2412 7.0818 37 1 -3.3345 2.5270 7.2056 38 1 -0.7156 0.3359 4.5135 39 1 1.3405 -0.3045 3.3197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281122757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -15.069822 kcal Electronic energy + Delta-G solvation = -24934.644560 eV Core-core repulsion = 21189.272915 eV Total energy + Delta-G solvation = -3745.371645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.29067 -38.08013 -37.88349 -37.19123 -36.49624 -35.67190 -33.77375 -32.85007 -31.91432 -31.91087 -28.35747 -27.36096 -25.61153 -23.73562 -23.42128 -21.95092 -20.36220 -19.77224 -18.98645 -18.41725 -18.03293 -16.97132 -16.56238 -16.40318 -16.18875 -15.67211 -15.50245 -15.19219 -15.12500 -14.94339 -14.43941 -14.41818 -14.22469 -13.64807 -13.60451 -13.53739 -13.13140 -12.81727 -12.76141 -12.68290 -12.63362 -12.53646 -12.29303 -12.24413 -11.98061 -11.76356 -11.69242 -11.41293 -11.23901 -11.21617 -10.96237 -10.59315 -10.06783 -9.91012 -9.89767 -8.32529 -5.77663 -0.24406 0.05627 0.42550 1.40744 1.49765 1.55813 1.63464 2.03414 2.35976 2.44294 2.57020 2.81265 2.95227 3.23348 3.58671 3.64744 3.84131 3.94900 4.01550 4.04006 4.16025 4.28316 4.40448 4.44784 4.52980 4.56227 4.64989 4.75631 4.92730 4.97246 5.00980 5.12054 5.25469 5.26854 5.30343 5.35146 5.45717 5.54585 5.57343 6.02508 6.37863 6.82545 7.19214 7.22956 8.62361 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002886 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.843470 B = 9699.637910 C = 9795.548222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.228 3.772 4 N -0.815 5.815 5 C -0.290 4.290 6 H 0.111 0.889 7 C 0.003 3.997 8 N -0.847 5.847 9 Si 0.985 3.015 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.265 1.265 13 S 2.576 3.424 14 O -1.006 7.006 15 O -1.011 7.011 16 C -0.684 4.684 17 C -0.045 4.045 18 C -0.143 4.143 19 C -0.042 4.042 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.023 4.023 23 Cl -0.214 7.214 24 C -0.140 4.140 25 C -0.040 4.040 26 H 0.230 0.770 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.276 0.724 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 2.478 9.551 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.153 4.153 3 C 0.103 3.897 4 N -0.639 5.639 5 C -0.432 4.432 6 H 0.128 0.872 7 C -0.206 4.206 8 N -0.486 5.486 9 Si 0.808 3.192 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.190 1.190 13 S 2.677 3.323 14 O -0.997 6.997 15 O -1.001 7.001 16 C -0.768 4.768 17 C -0.064 4.064 18 C -0.161 4.161 19 C -0.042 4.042 20 C -0.112 4.112 21 C -0.159 4.159 22 C -0.086 4.086 23 Cl -0.188 7.188 24 C -0.159 4.159 25 C -0.060 4.060 26 H 0.247 0.753 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.171 0.829 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.126 2.161 10.129 15.200 hybrid contribution -0.323 0.598 -0.574 0.890 sum -11.449 2.759 9.555 15.165 Atomic orbital electron populations 1.25017 0.96164 1.02072 1.03661 1.23694 0.95121 0.98668 0.97835 1.18658 0.84576 0.85612 1.00826 1.54961 1.73807 1.15252 1.19897 1.20022 1.38050 0.93754 0.91370 0.87161 1.26068 0.95713 0.99833 0.98978 1.70318 1.25635 1.36448 1.16205 0.85068 0.78347 0.78481 0.77326 1.19569 1.20295 1.18967 1.08411 0.78026 0.72323 0.73554 1.93340 1.63436 1.56755 1.86128 1.93338 1.86212 1.36977 1.83620 1.31784 1.25893 1.01833 1.17280 1.20977 0.97148 0.94027 0.94246 1.21431 0.94025 1.00839 0.99827 1.20325 0.96248 0.92783 0.94858 1.20650 0.93399 1.04256 0.92877 1.21821 0.97364 1.03188 0.93571 1.24519 0.99535 1.06390 0.78117 1.98730 1.96919 1.99399 1.23718 1.21416 0.97273 0.96977 1.00185 1.20918 0.93227 0.98148 0.93665 0.75329 0.86604 0.89835 0.91345 0.85943 0.83125 0.88643 0.88445 0.91139 0.91269 0.87100 0.87011 0.82948 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.82 19.25 74.32 1.43 -8.39 16 2 C -0.15 -6.65 11.65 31.13 0.36 -6.29 16 3 C 0.23 10.44 5.45 84.57 0.46 10.90 16 4 N -0.82 -39.43 2.88 -352.50 -1.02 -40.45 16 5 C -0.29 -14.43 9.45 84.03 0.79 -13.64 16 6 H 0.11 5.53 7.29 -2.91 -0.02 5.51 16 7 C 0.00 0.13 4.99 84.86 0.42 0.55 16 8 N -0.85 -40.39 9.01 21.65 0.20 -40.19 16 9 Si 0.98 38.01 29.63 68.60 2.03 40.04 16 10 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 13 S 2.58 122.16 5.65 -56.49 -0.32 121.84 16 14 O -1.01 -52.01 16.08 -128.00 -2.06 -54.07 16 15 O -1.01 -49.90 15.85 -128.00 -2.03 -51.93 16 16 C -0.68 -28.34 5.97 22.27 0.13 -28.20 16 17 C -0.04 -1.68 9.52 22.27 0.21 -1.47 16 18 C -0.14 -4.13 9.70 22.27 0.22 -3.92 16 19 C -0.04 -1.04 5.13 -19.86 -0.10 -1.14 16 20 C -0.07 -1.09 5.34 29.85 0.16 -0.93 16 21 C -0.12 -1.69 5.32 30.59 0.16 -1.53 16 22 C -0.02 -0.24 6.66 71.98 0.48 0.24 16 23 Cl -0.21 -3.55 29.15 -2.72 -0.08 -3.63 16 24 C -0.14 -3.95 9.70 22.27 0.22 -3.73 16 25 C -0.04 -1.47 9.52 22.27 0.21 -1.26 16 26 H 0.23 6.95 7.80 -4.41 -0.03 6.92 16 27 H 0.12 5.45 6.05 -2.39 -0.01 5.43 16 28 H 0.08 3.60 6.94 -2.39 -0.02 3.58 16 29 H 0.28 12.42 8.31 -92.71 -0.77 11.65 16 30 H 0.12 4.70 7.61 -2.91 -0.02 4.68 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.10 1.11 8.09 -2.39 -0.02 1.10 16 33 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.12 4.50 7.62 -2.91 -0.02 4.48 16 Total: -1.00 -64.17 363.71 2.94 -61.23 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 1.06 Total: 25.96 kcal Atomic # 6 Polarization: -63.97 SS G_CDS: 5.16 Total: -58.81 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -0.82 Total: -80.64 kcal Atomic # 8 Polarization: -101.91 SS G_CDS: -4.09 Total: -106.00 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: 122.16 SS G_CDS: -0.32 Total: 121.84 kcal Atomic # 17 Polarization: -3.55 SS G_CDS: -0.08 Total: -3.63 kcal Total: -64.17 2.94 -61.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281122757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.161 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds