Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.19911 * 2 1 4 4 C 1.38426 * 114.92168 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.53821 * 180.02562 * 4 3 2 6 6 C 1.33382 * 114.92029 * 359.97438 * 4 3 2 7 7 S 1.76199 * 125.20361 * 179.97438 * 6 4 3 8 8 O 1.42100 * 106.39996 * 336.45527 * 7 6 4 9 9 O 1.42102 * 106.40371 * 203.54021 * 7 6 4 10 10 N 1.65597 * 107.22324 * 89.99585 * 7 6 4 11 11 C 1.39989 * 119.99747 * 64.99929 * 10 7 6 12 12 C 1.40428 * 125.97412 * 179.71834 * 11 10 7 13 13 C 1.35248 * 107.86222 * 180.26756 * 12 11 10 14 14 N 1.34956 * 107.86226 * 359.97438 * 13 12 11 15 15 C 1.46498 * 125.97218 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47484 * 125.01831 * 15 14 13 17 17 H 1.08001 * 120.00348 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99956 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47533 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47385 * 120.00210 * 20 18 16 23 23 H 1.48509 * 109.46850 * 239.99481 * 20 18 16 24 24 N 1.31224 * 125.97722 * 0.02687 * 11 10 7 25 25 S 1.75882 * 125.20671 * 180.31532 * 2 1 3 26 26 H 1.08995 * 109.47393 * 90.00876 * 1 2 3 27 27 H 1.09005 * 109.46629 * 210.00062 * 1 2 3 28 28 H 1.08991 * 109.47848 * 330.00128 * 1 2 3 29 29 H 1.08008 * 122.53901 * 0.05014 * 3 2 1 30 30 H 1.09005 * 109.46850 * 269.97517 * 5 4 3 31 31 H 1.08994 * 109.47047 * 29.97359 * 5 4 3 32 32 H 1.08994 * 109.47128 * 149.97758 * 5 4 3 33 33 H 0.97000 * 120.00187 * 245.00542 * 10 7 6 34 34 H 1.08003 * 126.06671 * 0.23727 * 12 11 10 35 35 H 1.08001 * 126.06975 * 180.02562 * 13 12 11 36 36 H 1.09007 * 109.47108 * 245.01881 * 15 14 13 37 37 H 1.09001 * 109.47096 * 5.01419 * 15 14 13 38 38 H 0.96991 * 119.99810 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 4.6622 1.9485 -0.0001 6 6 3.9751 -0.4475 -0.0005 7 16 5.6248 -1.0663 -0.0017 8 8 6.4389 -0.0373 -0.5473 9 8 5.5612 -2.3775 -0.5457 10 7 6.0854 -1.2379 1.5796 11 6 5.4360 -2.1673 2.4008 12 6 5.7263 -2.4193 3.7514 13 6 4.8851 -3.3863 4.1831 14 7 4.0907 -3.7357 3.1495 15 6 3.0346 -4.7505 3.1806 16 6 1.7355 -4.1377 2.7251 17 1 1.6998 -3.0963 2.4413 18 6 0.5919 -4.9063 2.6717 19 7 0.6352 -6.1743 3.0178 20 14 -1.0183 -4.1468 2.1064 21 1 -0.8012 -2.7156 1.7752 22 1 -1.5088 -4.8650 0.9028 23 1 -2.0252 -4.2559 3.1925 24 7 4.4534 -2.9594 2.0415 25 16 2.5210 -1.4371 -0.0079 26 1 -0.3634 -0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.8667 2.0896 0.0008 30 1 4.9091 2.2154 -1.0277 31 1 4.2562 2.8196 0.5140 32 1 5.5619 1.6099 0.5136 33 1 6.8050 -0.6944 1.9370 34 1 6.4868 -1.9284 4.3406 35 1 4.8539 -3.8041 5.1785 36 1 3.3012 -5.5727 2.5163 37 1 2.9221 -5.1268 4.1974 38 1 -0.1691 -6.7150 2.9798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292391051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = 33.871195 kcal Electronic energy + Delta-G solvation = -25748.367358 eV Core-core repulsion = 22039.454412 eV Total energy + Delta-G solvation = -3708.912946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51897 -38.38090 -36.98843 -35.70208 -35.21539 -33.31137 -32.74192 -30.79241 -29.46765 -28.31681 -26.98132 -26.69041 -23.21437 -21.69928 -21.01355 -20.66195 -19.96924 -18.43183 -17.52899 -17.13908 -16.87326 -16.64372 -15.63727 -15.40841 -14.78325 -14.44176 -14.29662 -14.24418 -14.04312 -13.27391 -13.13288 -13.05836 -12.96361 -12.82517 -12.53901 -12.21074 -12.04691 -11.96511 -11.81454 -11.74836 -11.62008 -11.57961 -11.27968 -10.98362 -10.89634 -10.71478 -10.45776 -10.18823 -9.96042 -9.59018 -8.83927 -8.69118 -8.38814 -7.98722 -7.66979 -6.29405 -4.33071 0.41969 0.81071 1.79362 2.14600 2.54259 2.65922 2.89630 3.14440 3.21238 3.23849 3.31655 3.61910 3.89989 4.23962 4.69637 4.72250 5.00269 5.10006 5.16374 5.25547 5.38480 5.40802 5.48011 5.52864 5.63529 5.84857 5.97608 6.02592 6.12796 6.17357 6.27256 6.28713 6.53960 6.63233 6.95966 7.09133 7.31373 7.65534 7.81428 7.92411 8.43819 8.75438 9.31506 10.80069 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.006034 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.098398 B = 4638.931794 C = 6452.457987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.034 3.966 5 C -0.117 4.117 6 C -0.813 4.813 7 S 2.721 3.279 8 O -0.956 6.956 9 O -0.930 6.930 10 N -1.014 6.014 11 C 0.273 3.727 12 C -0.305 4.305 13 C 0.068 3.932 14 N -0.311 5.311 15 C 0.255 3.745 16 C -0.525 4.525 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.281 1.281 24 N -0.299 5.299 25 S 0.314 5.686 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.430 0.570 34 H 0.140 0.860 35 H 0.171 0.829 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 13.499 -1.549 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.282 4.282 3 C -0.208 4.208 4 C 0.016 3.984 5 C -0.175 4.175 6 C -1.016 5.016 7 S 2.809 3.191 8 O -0.946 6.946 9 O -0.919 6.919 10 N -0.767 5.767 11 C 0.018 3.982 12 C -0.338 4.338 13 C -0.083 4.083 14 N -0.092 5.092 15 C 0.138 3.862 16 C -0.564 4.564 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.207 1.207 24 N -0.130 5.130 25 S 0.585 5.415 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.188 0.812 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.408 10.928 -3.328 12.245 hybrid contribution -0.466 2.531 1.088 2.794 sum 3.942 13.459 -2.241 14.203 Atomic orbital electron populations 1.20514 0.87704 1.04034 1.03056 1.25387 1.01055 0.98908 1.02859 1.19978 0.92110 0.99358 1.09394 1.18486 0.95139 0.92299 0.92513 1.20914 0.96794 0.95901 1.03912 1.35290 1.27583 1.07002 1.31742 1.01145 0.72568 0.73604 0.71768 1.93582 1.66626 1.59012 1.75417 1.93642 1.86207 1.37135 1.74962 1.52596 1.46059 1.47613 1.30472 1.18695 0.95374 0.93276 0.90885 1.20829 1.09951 1.08841 0.94215 1.22431 0.93128 0.97767 0.94992 1.49099 1.26627 1.28799 1.04685 1.19833 0.82757 0.84097 0.99511 1.21304 0.91726 0.97940 1.45385 0.90764 1.24896 0.99177 0.94739 0.95064 1.69910 1.29464 1.06176 1.47598 0.86476 0.83005 0.79520 0.78703 1.19356 1.20505 1.20699 1.77431 1.15687 1.09283 1.10627 1.85287 0.89787 1.01935 1.64506 0.90222 0.90323 0.90374 0.84288 0.89511 0.90905 0.90400 0.73419 0.84227 0.81169 0.93343 0.92373 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.38 36.00 0.37 -0.86 16 2 C -0.16 -2.52 6.51 -36.00 -0.23 -2.75 16 3 C -0.18 -2.52 9.85 -41.21 -0.41 -2.92 16 4 C 0.03 0.51 5.80 -106.25 -0.62 -0.10 16 5 C -0.12 -1.39 8.98 36.01 0.32 -1.07 16 6 C -0.81 -14.09 6.50 29.04 0.19 -13.90 16 7 S 2.72 46.86 5.33 -107.50 -0.57 46.29 16 8 O -0.96 -15.70 15.23 -57.17 -0.87 -16.57 16 9 O -0.93 -19.54 17.12 -57.17 -0.98 -20.52 16 10 N -1.01 -15.58 5.91 31.39 0.19 -15.39 16 11 C 0.27 5.08 7.72 -154.55 -1.19 3.89 16 12 C -0.30 -4.96 10.83 -39.82 -0.43 -5.39 16 13 C 0.07 1.19 11.43 -17.24 -0.20 0.99 16 14 N -0.31 -6.71 3.67 -62.56 -0.23 -6.94 16 15 C 0.26 6.11 6.26 -5.20 -0.03 6.08 16 16 C -0.53 -13.63 9.24 -34.44 -0.32 -13.95 16 17 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 20 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 21 H -0.27 -5.77 6.58 56.52 0.37 -5.39 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.30 -6.57 10.69 31.41 0.34 -6.24 16 25 S 0.31 5.97 22.43 -107.50 -2.41 3.55 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.16 7.62 -51.93 -0.40 0.76 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.08 0.92 6.22 -51.93 -0.32 0.60 16 33 H 0.43 4.77 8.96 -34.47 -0.31 4.46 16 34 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 36 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -32.28 354.81 -10.52 -42.81 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.40 Total: 4.55 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -2.64 Total: -28.41 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 1.03 Total: -52.18 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.85 Total: -37.09 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -2.98 Total: 49.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.28 -10.52 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292391051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.677 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds