Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.19911 * 2 1 4 4 C 1.38426 * 114.92168 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.53821 * 180.02562 * 4 3 2 6 6 C 1.33382 * 114.92029 * 359.97438 * 4 3 2 7 7 S 1.76199 * 125.20361 * 179.97438 * 6 4 3 8 8 O 1.42100 * 106.39996 * 336.45527 * 7 6 4 9 9 O 1.42102 * 106.40371 * 203.54021 * 7 6 4 10 10 N 1.65597 * 107.22324 * 89.99585 * 7 6 4 11 11 C 1.39989 * 119.99747 * 64.99929 * 10 7 6 12 12 C 1.40428 * 125.97412 * 179.71834 * 11 10 7 13 13 C 1.35248 * 107.86222 * 180.26756 * 12 11 10 14 14 N 1.34956 * 107.86226 * 359.97438 * 13 12 11 15 15 C 1.46498 * 125.97218 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47484 * 125.01831 * 15 14 13 17 17 H 1.08001 * 120.00348 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99956 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47533 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47385 * 120.00210 * 20 18 16 23 23 H 1.48509 * 109.46850 * 239.99481 * 20 18 16 24 24 N 1.31224 * 125.97722 * 0.02687 * 11 10 7 25 25 S 1.75882 * 125.20671 * 180.31532 * 2 1 3 26 26 H 1.08995 * 109.47393 * 90.00876 * 1 2 3 27 27 H 1.09005 * 109.46629 * 210.00062 * 1 2 3 28 28 H 1.08991 * 109.47848 * 330.00128 * 1 2 3 29 29 H 1.08008 * 122.53901 * 0.05014 * 3 2 1 30 30 H 1.09005 * 109.46850 * 269.97517 * 5 4 3 31 31 H 1.08994 * 109.47047 * 29.97359 * 5 4 3 32 32 H 1.08994 * 109.47128 * 149.97758 * 5 4 3 33 33 H 0.97000 * 120.00187 * 245.00542 * 10 7 6 34 34 H 1.08003 * 126.06671 * 0.23727 * 12 11 10 35 35 H 1.08001 * 126.06975 * 180.02562 * 13 12 11 36 36 H 1.09007 * 109.47108 * 245.01881 * 15 14 13 37 37 H 1.09001 * 109.47096 * 5.01419 * 15 14 13 38 38 H 0.96991 * 119.99810 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 4.6622 1.9485 -0.0001 6 6 3.9751 -0.4475 -0.0005 7 16 5.6248 -1.0663 -0.0017 8 8 6.4389 -0.0373 -0.5473 9 8 5.5612 -2.3775 -0.5457 10 7 6.0854 -1.2379 1.5796 11 6 5.4360 -2.1673 2.4008 12 6 5.7263 -2.4193 3.7514 13 6 4.8851 -3.3863 4.1831 14 7 4.0907 -3.7357 3.1495 15 6 3.0346 -4.7505 3.1806 16 6 1.7355 -4.1377 2.7251 17 1 1.6998 -3.0963 2.4413 18 6 0.5919 -4.9063 2.6717 19 7 0.6352 -6.1743 3.0178 20 14 -1.0183 -4.1468 2.1064 21 1 -0.8012 -2.7156 1.7752 22 1 -1.5088 -4.8650 0.9028 23 1 -2.0252 -4.2559 3.1925 24 7 4.4534 -2.9594 2.0415 25 16 2.5210 -1.4371 -0.0079 26 1 -0.3634 -0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.8667 2.0896 0.0008 30 1 4.9091 2.2154 -1.0277 31 1 4.2562 2.8196 0.5140 32 1 5.5619 1.6099 0.5136 33 1 6.8050 -0.6944 1.9370 34 1 6.4868 -1.9284 4.3406 35 1 4.8539 -3.8041 5.1785 36 1 3.3012 -5.5727 2.5163 37 1 2.9221 -5.1268 4.1974 38 1 -0.1691 -6.7150 2.9798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292391051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = 12.294944 kcal Electronic energy + Delta-G solvation = -25749.302974 eV Core-core repulsion = 22039.454412 eV Total energy + Delta-G solvation = -3709.848562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97129 -39.55776 -38.36955 -37.13908 -36.66543 -35.17926 -33.84507 -32.49114 -30.90438 -29.31323 -28.47034 -28.13679 -25.01078 -22.82360 -22.43767 -22.10705 -21.25485 -19.77367 -18.84631 -18.61277 -18.44937 -18.24793 -17.04079 -16.88958 -16.33168 -16.01148 -15.75492 -15.35170 -15.30828 -14.54069 -14.43952 -14.31654 -14.16188 -14.11577 -13.99954 -13.75066 -13.41872 -13.37298 -13.22057 -13.04681 -12.94634 -12.82774 -12.72677 -12.64871 -12.44566 -12.24356 -12.01891 -11.62479 -11.48142 -11.27788 -10.68665 -10.03765 -9.85178 -9.33277 -9.16626 -8.28413 -6.38537 -0.88718 -0.43332 0.50610 0.91355 1.21608 1.33575 1.34928 1.37669 1.47076 1.57486 1.95275 2.17093 2.36287 2.56473 3.04882 3.37134 3.64156 3.69312 4.06371 4.10712 4.22582 4.38916 4.47493 4.57364 4.61233 4.75876 4.85046 4.89369 4.96485 4.97340 5.01587 5.09200 5.13056 5.18615 5.48263 5.64575 5.70522 5.92580 5.99333 6.33857 6.74307 6.99743 7.29723 8.80332 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.006034 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.098398 B = 4638.931794 C = 6452.457987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.149 4.149 3 C -0.172 4.172 4 C 0.047 3.953 5 C -0.123 4.123 6 C -0.823 4.823 7 S 2.734 3.266 8 O -0.950 6.950 9 O -0.976 6.976 10 N -0.999 5.999 11 C 0.269 3.731 12 C -0.291 4.291 13 C 0.066 3.934 14 N -0.341 5.341 15 C 0.269 3.731 16 C -0.531 4.531 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.924 5.924 20 Si 0.947 3.053 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.272 1.272 24 N -0.344 5.344 25 S 0.197 5.803 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.182 0.818 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.449 0.551 34 H 0.184 0.816 35 H 0.207 0.793 36 H 0.014 0.986 37 H 0.063 0.937 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 17.257 -0.661 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.270 4.270 3 C -0.202 4.202 4 C 0.028 3.972 5 C -0.181 4.181 6 C -1.027 5.027 7 S 2.823 3.177 8 O -0.940 6.940 9 O -0.966 6.966 10 N -0.756 5.756 11 C 0.012 3.988 12 C -0.323 4.323 13 C -0.083 4.083 14 N -0.122 5.122 15 C 0.151 3.849 16 C -0.570 4.570 17 H 0.085 0.915 18 C -0.181 4.181 19 N -0.564 5.564 20 Si 0.772 3.228 21 H -0.180 1.180 22 H -0.206 1.206 23 H -0.198 1.198 24 N -0.175 5.175 25 S 0.466 5.534 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.199 0.801 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.289 0.711 34 H 0.201 0.799 35 H 0.224 0.776 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.635 14.725 -2.426 15.627 hybrid contribution -0.413 1.532 0.797 1.775 sum 4.222 16.257 -1.629 16.875 Atomic orbital electron populations 1.20645 0.85860 1.04319 1.04558 1.25669 1.02016 0.97045 1.02251 1.20432 0.91511 1.00680 1.07613 1.19067 0.96513 0.92161 0.89451 1.21122 0.96018 0.95851 1.05126 1.35100 1.26004 1.07399 1.34197 1.00531 0.72539 0.72728 0.71896 1.93579 1.66580 1.58298 1.75572 1.93590 1.86933 1.39754 1.76313 1.52352 1.46371 1.47263 1.29616 1.19060 0.94665 0.92894 0.92159 1.21311 1.09932 1.07873 0.93218 1.23189 0.91944 0.97574 0.95592 1.48816 1.27694 1.29643 1.06070 1.19363 0.83047 0.83985 0.98551 1.21514 0.92830 0.97693 1.44932 0.91517 1.25640 1.02241 0.95112 0.95144 1.70002 1.30327 1.07282 1.48798 0.85659 0.79368 0.79469 0.78321 1.18049 1.20588 1.19762 1.77405 1.17635 1.10762 1.11664 1.85671 0.93357 1.06239 1.68088 0.88101 0.92526 0.87339 0.80086 0.88335 0.87474 0.90415 0.71072 0.79857 0.77625 0.96780 0.91972 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 10.38 71.24 0.74 -1.53 16 2 C -0.15 -4.45 6.51 24.59 0.16 -4.29 16 3 C -0.17 -4.31 9.85 21.22 0.21 -4.10 16 4 C 0.05 1.28 5.80 -20.92 -0.12 1.16 16 5 C -0.12 -2.44 8.98 71.24 0.64 -1.80 16 6 C -0.82 -28.26 6.50 66.72 0.43 -27.83 16 7 S 2.73 93.89 5.33 -56.49 -0.30 93.59 16 8 O -0.95 -29.91 15.23 -128.00 -1.95 -31.86 16 9 O -0.98 -42.86 17.12 -128.00 -2.19 -45.06 16 10 N -1.00 -29.54 5.91 -54.61 -0.32 -29.87 16 11 C 0.27 9.81 7.72 133.39 1.03 10.84 16 12 C -0.29 -8.75 10.83 22.11 0.24 -8.51 16 13 C 0.07 2.20 11.43 83.52 0.96 3.16 16 14 N -0.34 -15.01 3.67 -351.85 -1.29 -16.30 16 15 C 0.27 13.51 6.26 85.63 0.54 14.04 16 16 C -0.53 -28.66 9.24 25.60 0.24 -28.43 16 17 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 18 C 0.02 0.99 5.46 84.66 0.46 1.45 16 19 N -0.92 -52.02 13.29 21.45 0.28 -51.74 16 20 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 21 H -0.26 -10.75 6.58 99.48 0.66 -10.09 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 N -0.34 -15.51 10.69 -54.54 -0.58 -16.09 16 25 S 0.20 7.74 22.43 -56.49 -1.27 6.47 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.61 7.62 -2.38 -0.02 1.60 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.11 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.08 1.57 6.22 -2.39 -0.01 1.56 16 33 H 0.45 8.92 8.96 -96.75 -0.87 8.05 16 34 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.21 5.07 8.06 -2.91 -0.02 5.04 16 36 H 0.01 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 38 H 0.27 14.26 8.31 -92.72 -0.77 13.49 16 Total: -1.00 -74.52 354.81 0.12 -74.40 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.19 Total: 18.22 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 5.52 Total: -45.84 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -1.91 Total: -114.00 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -4.14 Total: -76.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 101.63 SS G_CDS: -1.57 Total: 100.06 kcal Total: -74.52 0.12 -74.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292391051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.695 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds