Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31590 * 122.22933 * 2 1 4 4 C 1.29955 * 117.13416 * 180.25100 * 3 2 1 5 5 N 1.38888 * 125.36432 * 179.77694 * 4 3 2 6 6 C 1.34770 * 120.00228 * 179.71799 * 5 4 3 7 7 O 1.21285 * 119.99959 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00331 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.29343 * 319.57873 * 8 6 5 10 10 C 1.52917 * 109.29879 * 78.93899 * 8 6 5 11 11 C 1.53348 * 108.66818 * 171.04839 * 10 8 6 12 12 C 1.53069 * 108.45717 * 292.51314 * 11 10 8 13 13 C 1.50181 * 109.89013 * 48.87742 * 12 11 10 14 14 O 1.21286 * 118.24194 * 162.44189 * 13 12 11 15 15 N 1.33349 * 123.50856 * 342.42146 * 13 12 11 16 16 S 1.76141 * 109.26787 * 359.50497 * 4 3 2 17 17 C 1.34659 * 122.22772 * 179.70796 * 2 1 3 18 18 S 1.76204 * 125.93263 * 359.97438 * 17 2 1 19 19 C 1.76193 * 99.99859 * 180.02562 * 18 17 2 20 20 H 1.08006 * 120.00349 * 359.97438 * 19 18 17 21 21 C 1.38429 * 119.99994 * 180.02562 * 19 18 17 22 22 N 1.31814 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47341 * 59.99720 * 23 21 19 25 25 H 1.48498 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99962 * 23 21 19 27 27 H 1.08993 * 109.47713 * 270.29285 * 1 2 3 28 28 H 1.09007 * 109.47296 * 30.29210 * 1 2 3 29 29 H 1.09004 * 109.47426 * 150.29137 * 1 2 3 30 30 H 0.97004 * 120.00237 * 359.71568 * 5 4 3 31 31 H 1.09009 * 109.58835 * 51.31058 * 10 8 6 32 32 H 1.08996 * 109.62858 * 290.81914 * 10 8 6 33 33 H 1.09002 * 109.67626 * 172.75804 * 11 10 8 34 34 H 1.09004 * 109.67030 * 52.26108 * 11 10 8 35 35 H 1.08999 * 109.40300 * 169.00716 * 12 11 10 36 36 H 1.09007 * 109.40061 * 288.83972 * 12 11 10 37 37 H 0.97004 * 117.94322 * 182.22235 * 15 13 12 38 38 H 0.96992 * 120.00395 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 -0.0051 5 7 4.4044 2.0545 -0.0103 6 6 5.7297 1.8099 -0.0096 7 8 6.1354 0.6669 -0.0038 8 6 6.7077 2.9566 -0.0159 9 1 6.3452 3.7353 -0.6868 10 6 6.8255 3.5281 1.3975 11 6 7.9801 4.5369 1.4244 12 6 9.2928 3.7765 1.2205 13 6 9.1711 2.8540 0.0417 14 8 10.1891 2.4241 -0.4582 15 7 8.0036 2.4819 -0.4844 16 16 3.9345 -0.7100 0.0037 17 6 2.2251 -1.1391 0.0058 18 16 1.5696 -2.7747 0.0148 19 6 3.0664 -3.7041 0.0199 20 1 4.0187 -3.1944 0.0168 21 6 3.0220 -5.0877 0.0270 22 7 1.8599 -5.7098 0.0304 23 14 4.6089 -6.0731 0.0318 24 1 5.3990 -5.7334 1.2423 25 1 4.2909 -7.5236 0.0386 26 1 5.3985 -5.7458 -1.1826 27 1 -0.3634 0.0053 1.0275 28 1 -0.3634 0.8874 -0.5184 29 1 -0.3634 -0.8926 -0.5093 30 1 4.0800 2.9687 -0.0146 31 1 7.0282 2.7215 2.1022 32 1 5.8961 4.0287 1.6687 33 1 7.9981 5.0486 2.3867 34 1 7.8497 5.2652 0.6239 35 1 10.0993 4.4877 1.0418 36 1 9.5158 3.1930 2.1138 37 1 8.0178 1.8562 -1.2256 38 1 1.8287 -6.6792 0.0357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340141374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -40.762712 kcal Electronic energy + Delta-G solvation = -24183.307947 eV Core-core repulsion = 20471.158632 eV Total energy + Delta-G solvation = -3712.149315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18609 -39.73488 -38.60235 -36.65102 -34.97383 -33.41755 -32.86669 -31.03918 -30.00592 -27.18519 -26.09898 -25.79978 -23.53093 -23.19815 -21.32464 -19.96957 -19.58078 -18.42302 -17.85008 -17.45931 -16.95118 -16.50396 -15.80293 -15.63009 -15.46317 -15.14203 -14.69317 -14.50519 -14.26591 -14.18288 -14.01166 -13.68685 -13.24876 -12.73090 -12.51642 -12.25449 -12.00795 -11.93239 -11.61325 -11.51534 -11.44587 -11.27720 -11.13333 -10.93560 -10.68449 -10.31633 -10.24150 -9.99189 -9.58526 -9.46155 -9.14497 -8.82064 -8.72575 -7.88434 -6.64314 -6.56988 -4.32824 1.26141 1.78681 2.19038 2.24270 2.46903 2.60884 3.02461 3.05086 3.10560 3.13342 3.30235 3.53118 3.94232 4.05024 4.08443 4.14021 4.27690 4.48795 4.66819 4.78662 4.91192 4.98181 5.12058 5.19051 5.20142 5.34227 5.36657 5.61984 5.91838 6.03423 6.18351 6.37407 6.38178 6.43150 6.84288 6.94593 7.04774 7.28615 7.74704 7.90191 7.99261 8.43111 8.84152 10.41265 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.003274 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.928838 B = 8549.296300 C =10438.731099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.470 5.470 4 C 0.180 3.820 5 N -0.608 5.608 6 C 0.491 3.509 7 O -0.492 6.492 8 C 0.139 3.861 9 H 0.105 0.895 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.138 4.138 13 C 0.525 3.475 14 O -0.551 6.551 15 N -0.701 5.701 16 S 0.200 5.800 17 C -0.249 4.249 18 S 0.156 5.844 19 C -0.559 4.559 20 H 0.088 0.912 21 C 0.083 3.917 22 N -0.862 5.862 23 Si 0.925 3.075 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.415 0.585 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.407 0.593 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 20.467 2.577 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.125 4.125 3 N -0.191 5.191 4 C -0.191 4.191 5 N -0.257 5.257 6 C 0.274 3.726 7 O -0.365 6.365 8 C 0.029 3.971 9 H 0.123 0.877 10 C -0.170 4.170 11 C -0.158 4.158 12 C -0.178 4.178 13 C 0.312 3.688 14 O -0.429 6.429 15 N -0.355 5.355 16 S 0.444 5.556 17 C -0.486 4.486 18 S 0.407 5.593 19 C -0.707 4.707 20 H 0.106 0.894 21 C -0.128 4.128 22 N -0.495 5.495 23 Si 0.749 3.251 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.192 1.192 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.253 0.747 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.245 0.755 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.438 18.752 2.519 19.985 hybrid contribution 0.945 0.081 -0.274 0.987 sum 7.383 18.832 2.245 20.352 Atomic orbital electron populations 1.20118 0.87988 1.02159 1.01821 1.19023 0.96709 0.84536 1.12260 1.65795 1.02773 1.32435 1.18141 1.23706 0.89875 0.92773 1.12759 1.42254 1.04130 1.08266 1.71053 1.20995 0.82277 0.91540 0.77790 1.90767 1.76894 1.22061 1.46752 1.20725 0.83511 0.93796 0.99069 0.87710 1.21944 1.01192 1.00156 0.93736 1.21661 0.92737 0.97525 1.03866 1.21709 0.99967 0.98835 0.97263 1.20167 0.82461 0.81462 0.84675 1.90792 1.34229 1.56459 1.61400 1.45248 1.04216 1.48726 1.37260 1.85872 1.01832 0.95355 1.72542 1.28797 1.01217 1.06828 1.11752 1.83081 1.10957 0.84323 1.80945 1.23233 0.93562 0.94087 1.59861 0.89377 1.25026 0.98314 0.96653 0.92794 1.69997 1.24459 1.10489 1.44545 0.86082 0.81109 0.78119 0.79783 1.19177 1.20299 1.19163 0.91853 0.91896 0.91035 0.74715 0.89676 0.88576 0.89598 0.90531 0.87788 0.87845 0.75541 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.02 36.00 0.36 -0.67 16 2 C 0.02 0.35 6.73 -83.96 -0.57 -0.21 16 3 N -0.47 -8.84 10.55 -9.78 -0.10 -8.94 16 4 C 0.18 3.19 8.40 -87.19 -0.73 2.45 16 5 N -0.61 -7.49 5.40 -11.78 -0.06 -7.55 16 6 C 0.49 5.93 6.95 -10.98 -0.08 5.85 16 7 O -0.49 -8.26 13.90 5.55 0.08 -8.18 16 8 C 0.14 1.05 3.45 -69.52 -0.24 0.81 16 9 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 10 C -0.13 -0.72 5.29 -26.59 -0.14 -0.86 16 11 C -0.12 -0.48 6.03 -26.52 -0.16 -0.64 16 12 C -0.14 -0.90 6.03 -28.10 -0.17 -1.07 16 13 C 0.53 5.73 7.71 -11.87 -0.09 5.64 16 14 O -0.55 -8.53 17.78 5.55 0.10 -8.43 16 15 N -0.70 -7.03 4.79 -55.99 -0.27 -7.29 16 16 S 0.20 4.24 18.35 -107.50 -1.97 2.27 16 17 C -0.25 -5.57 6.67 29.47 0.20 -5.37 16 18 S 0.16 3.84 20.74 -107.50 -2.23 1.61 16 19 C -0.56 -15.05 9.26 30.80 0.29 -14.76 16 20 H 0.09 2.36 5.97 -52.48 -0.31 2.04 16 21 C 0.08 2.21 5.49 -17.49 -0.10 2.12 16 22 N -0.86 -23.54 13.22 55.47 0.73 -22.80 16 23 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 30 H 0.42 3.47 8.82 -40.82 -0.36 3.11 16 31 H 0.08 0.60 8.10 -51.92 -0.42 0.18 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.41 4.61 8.44 -40.82 -0.34 4.27 16 38 H 0.28 7.07 8.32 -40.82 -0.34 6.73 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -34.37 349.80 -9.25 -43.61 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.34 Total: 1.53 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.43 Total: -6.72 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.30 Total: -46.59 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.18 Total: -16.61 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -4.20 Total: 3.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.37 -9.25 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.850 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds