Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31590 * 122.22933 * 2 1 4 4 C 1.29955 * 117.13416 * 180.25100 * 3 2 1 5 5 N 1.38888 * 125.36432 * 179.77694 * 4 3 2 6 6 C 1.34770 * 120.00228 * 179.71799 * 5 4 3 7 7 O 1.21285 * 119.99959 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00331 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.29343 * 319.57873 * 8 6 5 10 10 C 1.52917 * 109.29879 * 78.93899 * 8 6 5 11 11 C 1.53348 * 108.66818 * 171.04839 * 10 8 6 12 12 C 1.53069 * 108.45717 * 292.51314 * 11 10 8 13 13 C 1.50181 * 109.89013 * 48.87742 * 12 11 10 14 14 O 1.21286 * 118.24194 * 162.44189 * 13 12 11 15 15 N 1.33349 * 123.50856 * 342.42146 * 13 12 11 16 16 S 1.76141 * 109.26787 * 359.50497 * 4 3 2 17 17 C 1.34659 * 122.22772 * 179.70796 * 2 1 3 18 18 S 1.76204 * 125.93263 * 359.97438 * 17 2 1 19 19 C 1.76193 * 99.99859 * 180.02562 * 18 17 2 20 20 H 1.08006 * 120.00349 * 359.97438 * 19 18 17 21 21 C 1.38429 * 119.99994 * 180.02562 * 19 18 17 22 22 N 1.31814 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47341 * 59.99720 * 23 21 19 25 25 H 1.48498 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99962 * 23 21 19 27 27 H 1.08993 * 109.47713 * 270.29285 * 1 2 3 28 28 H 1.09007 * 109.47296 * 30.29210 * 1 2 3 29 29 H 1.09004 * 109.47426 * 150.29137 * 1 2 3 30 30 H 0.97004 * 120.00237 * 359.71568 * 5 4 3 31 31 H 1.09009 * 109.58835 * 51.31058 * 10 8 6 32 32 H 1.08996 * 109.62858 * 290.81914 * 10 8 6 33 33 H 1.09002 * 109.67626 * 172.75804 * 11 10 8 34 34 H 1.09004 * 109.67030 * 52.26108 * 11 10 8 35 35 H 1.08999 * 109.40300 * 169.00716 * 12 11 10 36 36 H 1.09007 * 109.40061 * 288.83972 * 12 11 10 37 37 H 0.97004 * 117.94322 * 182.22235 * 15 13 12 38 38 H 0.96992 * 120.00395 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 -0.0051 5 7 4.4044 2.0545 -0.0103 6 6 5.7297 1.8099 -0.0096 7 8 6.1354 0.6669 -0.0038 8 6 6.7077 2.9566 -0.0159 9 1 6.3452 3.7353 -0.6868 10 6 6.8255 3.5281 1.3975 11 6 7.9801 4.5369 1.4244 12 6 9.2928 3.7765 1.2205 13 6 9.1711 2.8540 0.0417 14 8 10.1891 2.4241 -0.4582 15 7 8.0036 2.4819 -0.4844 16 16 3.9345 -0.7100 0.0037 17 6 2.2251 -1.1391 0.0058 18 16 1.5696 -2.7747 0.0148 19 6 3.0664 -3.7041 0.0199 20 1 4.0187 -3.1944 0.0168 21 6 3.0220 -5.0877 0.0270 22 7 1.8599 -5.7098 0.0304 23 14 4.6089 -6.0731 0.0318 24 1 5.3990 -5.7334 1.2423 25 1 4.2909 -7.5236 0.0386 26 1 5.3985 -5.7458 -1.1826 27 1 -0.3634 0.0053 1.0275 28 1 -0.3634 0.8874 -0.5184 29 1 -0.3634 -0.8926 -0.5093 30 1 4.0800 2.9687 -0.0146 31 1 7.0282 2.7215 2.1022 32 1 5.8961 4.0287 1.6687 33 1 7.9981 5.0486 2.3867 34 1 7.8497 5.2652 0.6239 35 1 10.0993 4.4877 1.0418 36 1 9.5158 3.1930 2.1138 37 1 8.0178 1.8562 -1.2256 38 1 1.8287 -6.6792 0.0357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340141374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -66.511837 kcal Electronic energy + Delta-G solvation = -24184.424513 eV Core-core repulsion = 20471.158632 eV Total energy + Delta-G solvation = -3713.265881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11927 -40.83420 -40.07811 -37.46922 -36.25238 -34.83676 -34.01258 -32.30795 -30.93394 -28.79552 -27.73535 -26.88885 -24.69767 -23.83225 -22.57696 -21.43663 -20.17392 -19.99116 -19.21502 -18.51086 -18.15249 -17.56825 -17.10347 -17.08813 -16.70909 -16.49205 -15.92280 -15.59141 -15.30544 -15.16689 -14.95780 -14.59456 -14.51971 -14.38080 -13.54607 -13.43289 -13.29423 -13.14535 -13.09844 -12.89460 -12.74517 -12.32290 -12.16099 -12.05846 -12.01215 -11.87665 -11.49351 -11.36641 -10.96385 -10.80061 -10.50998 -10.48454 -10.30221 -9.54158 -8.59824 -8.38791 -6.31881 -0.25452 0.20950 0.80923 1.05849 1.24161 1.26835 1.32898 1.38279 1.54662 1.66686 1.99002 2.11984 2.22398 2.79528 3.07334 3.18636 3.52249 3.55354 3.75881 3.84470 4.01158 4.20410 4.43553 4.52205 4.67231 4.76303 4.82223 4.86259 4.94578 4.97148 5.04142 5.09674 5.27175 5.29314 5.46878 5.55633 5.88450 5.99573 6.19103 6.67983 6.85070 6.85606 7.06301 8.47686 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.003274 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.928838 B = 8549.296300 C =10438.731099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.039 3.961 3 N -0.476 5.476 4 C 0.228 3.772 5 N -0.591 5.591 6 C 0.494 3.506 7 O -0.536 6.536 8 C 0.147 3.853 9 H 0.154 0.846 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.135 4.135 13 C 0.518 3.482 14 O -0.608 6.608 15 N -0.705 5.705 16 S 0.149 5.851 17 C -0.281 4.281 18 S 0.101 5.899 19 C -0.577 4.577 20 H 0.079 0.921 21 C 0.038 3.962 22 N -0.895 5.895 23 Si 0.982 3.018 24 H -0.266 1.266 25 H -0.263 1.263 26 H -0.267 1.267 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.441 0.559 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.397 0.603 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 24.630 3.240 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 N -0.198 5.198 4 C -0.146 4.146 5 N -0.244 5.244 6 C 0.279 3.721 7 O -0.411 6.411 8 C 0.039 3.961 9 H 0.171 0.829 10 C -0.171 4.171 11 C -0.146 4.146 12 C -0.175 4.175 13 C 0.308 3.692 14 O -0.490 6.490 15 N -0.355 5.355 16 S 0.394 5.606 17 C -0.516 4.516 18 S 0.349 5.651 19 C -0.725 4.725 20 H 0.097 0.903 21 C -0.170 4.170 22 N -0.529 5.529 23 Si 0.803 3.197 24 H -0.191 1.191 25 H -0.187 1.187 26 H -0.192 1.192 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.284 0.716 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.232 0.768 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.791 23.010 3.197 24.203 hybrid contribution 0.933 -0.820 -0.489 1.335 sum 7.724 22.190 2.708 23.651 Atomic orbital electron populations 1.20252 0.85682 1.03159 1.03140 1.19693 0.98402 0.84143 1.08074 1.66028 1.02573 1.31109 1.20053 1.24072 0.90220 0.92813 1.07454 1.42387 1.03517 1.08133 1.70366 1.22088 0.82347 0.92214 0.75406 1.90776 1.77441 1.24639 1.48241 1.21116 0.80884 0.92138 1.01993 0.82853 1.22087 1.03613 1.00126 0.91239 1.21680 0.89943 0.96911 1.06085 1.21793 1.02337 0.98402 0.94934 1.21039 0.81684 0.81360 0.85110 1.90761 1.36154 1.58777 1.63290 1.45440 1.05214 1.48211 1.36676 1.86133 1.02370 0.98637 1.73449 1.28576 1.01610 1.06016 1.15445 1.82882 1.11018 0.86334 1.84866 1.23411 0.93936 0.94863 1.60336 0.90266 1.25833 1.01218 0.97428 0.92519 1.70074 1.26058 1.10798 1.45970 0.85234 0.77474 0.77465 0.79520 1.19072 1.18683 1.19168 0.90275 0.89310 0.91539 0.71599 0.91615 0.85225 0.87015 0.88550 0.86658 0.87589 0.76822 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.01 10.02 71.24 0.71 -1.29 16 2 C 0.04 1.51 6.73 41.77 0.28 1.79 16 3 N -0.48 -16.66 10.55 -184.87 -1.95 -18.61 16 4 C 0.23 7.57 8.40 179.15 1.50 9.08 16 5 N -0.59 -12.37 5.40 -309.57 -1.67 -14.04 16 6 C 0.49 10.58 6.95 87.66 0.61 11.19 16 7 O -0.54 -17.64 13.90 -3.05 -0.04 -17.68 16 8 C 0.15 1.63 3.45 44.36 0.15 1.79 16 9 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 10 C -0.13 -0.80 5.29 30.68 0.16 -0.64 16 11 C -0.11 -0.31 6.03 30.73 0.19 -0.13 16 12 C -0.14 -1.39 6.03 29.71 0.18 -1.21 16 13 C 0.52 10.70 7.71 87.72 0.68 11.37 16 14 O -0.61 -19.10 17.78 -3.05 -0.05 -19.16 16 15 N -0.71 -12.91 4.79 -450.23 -2.16 -15.06 16 16 S 0.15 6.42 18.35 -56.49 -1.04 5.38 16 17 C -0.28 -12.81 6.67 67.00 0.45 -12.36 16 18 S 0.10 5.23 20.74 -56.49 -1.17 4.06 16 19 C -0.58 -32.58 9.26 67.87 0.63 -31.95 16 20 H 0.08 4.47 5.97 -2.91 -0.02 4.45 16 21 C 0.04 2.06 5.49 84.74 0.47 2.53 16 22 N -0.89 -50.67 13.22 21.59 0.29 -50.38 16 23 Si 0.98 43.56 29.55 68.60 2.03 45.58 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.07 2.22 7.38 -2.39 -0.02 2.20 16 30 H 0.44 4.96 8.82 -92.70 -0.82 4.14 16 31 H 0.07 0.71 8.10 -2.38 -0.02 0.69 16 32 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.10 -0.01 8.13 -2.38 -0.02 -0.03 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.40 8.82 8.44 -92.71 -0.78 8.04 16 38 H 0.28 14.77 8.32 -92.71 -0.77 14.00 16 Total: -1.00 -81.23 349.80 -0.22 -81.45 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -0.46 Total: 8.31 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.01 Total: -9.84 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.49 Total: -98.10 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.10 Total: -36.84 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 11.64 SS G_CDS: -2.21 Total: 9.44 kcal Total: -81.23 -0.22 -81.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.939 kcal (2) G-P(sol) polarization free energy of solvation -81.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds