Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48508 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.38949 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99350 * 0.02562 * 10 9 7 12 12 C 1.50690 * 120.00144 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.47072 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99968 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 12 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 12 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 18 18 C 1.38238 * 120.00712 * 264.72379 * 17 16 14 19 19 C 1.38216 * 120.01570 * 179.77053 * 18 17 16 20 20 C 1.38270 * 120.02366 * 0.50820 * 19 18 17 21 21 N 1.48022 * 119.99178 * 179.72393 * 20 19 18 22 22 O 1.21802 * 119.99765 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00010 * 0.02562 * 21 20 19 24 24 C 1.38192 * 120.01275 * 359.74491 * 20 19 18 25 25 C 1.38327 * 120.00751 * 84.99966 * 17 16 14 26 26 Cl 1.73596 * 120.01495 * 359.97438 * 25 17 16 27 27 H 0.97003 * 120.00445 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99993 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47343 * 60.00501 * 12 10 9 30 30 H 1.08998 * 109.47656 * 300.00359 * 12 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 13 12 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 33 33 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 34 34 H 1.08007 * 119.99065 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.98868 * 180.24720 * 19 18 17 36 36 H 1.07995 * 120.00641 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0014 14 6 1.7465 -7.2471 0.0023 15 8 0.5541 -7.4688 0.0087 16 6 2.7258 -8.3926 0.0021 17 6 1.9723 -9.6977 0.0100 18 6 1.7271 -10.3472 1.2054 19 6 1.0319 -11.5418 1.2132 20 6 0.5904 -12.0932 0.0246 21 7 -0.1487 -13.3756 0.0332 22 8 -0.5372 -13.8617 -1.0138 23 8 -0.3683 -13.9448 1.0875 24 6 0.8395 -11.4474 -1.1716 25 6 1.5308 -10.2488 -1.1795 26 17 1.8440 -9.4370 -2.6817 27 1 -0.4851 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0016 29 1 0.6168 -4.9209 -0.8876 30 1 0.6173 -4.9205 0.8923 31 1 3.1494 -5.7991 0.0011 32 1 3.3486 -8.3379 -0.8907 33 1 3.3563 -8.3317 0.8891 34 1 2.0753 -9.9190 2.1338 35 1 0.8371 -12.0468 2.1478 36 1 0.4943 -11.8780 -2.0999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343498793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -59.934051 kcal Electronic energy + Delta-G solvation = -25492.071245 eV Core-core repulsion = 21198.460926 eV Total energy + Delta-G solvation = -4293.610319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52687 -40.58407 -39.38512 -38.19718 -37.09917 -36.88177 -34.62824 -33.89293 -33.82161 -31.71995 -31.48399 -29.88132 -27.71209 -25.79270 -24.45471 -23.79950 -22.43049 -20.46192 -19.84556 -19.70527 -19.03487 -18.24405 -17.87014 -17.42725 -16.70274 -16.65044 -15.86718 -15.60028 -15.43325 -15.29723 -14.67553 -14.62858 -14.26884 -14.16322 -13.88598 -13.35117 -12.86122 -12.78637 -12.32115 -12.28279 -12.23627 -11.95310 -11.84110 -11.71541 -11.70586 -11.45547 -11.34235 -11.21164 -10.47907 -10.40962 -10.24048 -9.83520 -9.73503 -9.56444 -9.01465 -8.74774 -8.19504 -6.59953 -4.02349 -0.62485 0.29093 0.87922 0.90467 1.53341 2.52922 2.57372 3.03814 3.15186 3.18951 3.25197 3.63315 3.80125 3.85586 4.03755 4.04979 4.19248 4.38000 4.71901 4.75499 4.80219 4.87529 4.97946 5.08024 5.08452 5.21043 5.47902 5.60923 5.76332 5.81873 5.94671 6.01367 6.45370 7.29003 7.38087 7.54543 7.82561 8.17451 8.35194 8.95788 9.29466 9.76574 10.56767 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.001941 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.927196 B =14424.736040 C =14653.393293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.702 5.702 14 C 0.517 3.483 15 O -0.539 6.539 16 C -0.119 4.119 17 C 0.003 3.997 18 C -0.093 4.093 19 C -0.048 4.048 20 C -0.038 4.038 21 N 0.030 4.970 22 O -0.157 6.157 23 O -0.155 6.155 24 C -0.046 4.046 25 C -0.026 4.026 26 Cl -0.030 7.030 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.413 0.587 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -21.275 0.297 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.301 3.699 15 O -0.417 6.417 16 C -0.159 4.159 17 C 0.001 3.999 18 C -0.112 4.112 19 C -0.067 4.067 20 C -0.121 4.121 21 N 0.551 4.449 22 O -0.373 6.373 23 O -0.372 6.372 24 C -0.065 4.065 25 C -0.053 4.053 26 Cl 0.000 7.000 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.251 0.749 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.963 -20.519 0.151 20.899 hybrid contribution -0.050 0.758 -0.188 0.783 sum 3.912 -19.761 -0.037 20.145 Atomic orbital electron populations 1.69615 1.06045 1.28561 1.49061 1.25348 0.95684 1.00030 0.96664 0.85748 0.79673 0.80719 0.77896 1.19097 1.20556 1.20560 1.19779 0.93498 0.81925 1.48331 0.87562 1.41812 1.09520 1.04520 1.62308 1.19696 0.88288 0.84951 0.85928 1.90499 1.13649 1.86783 1.57581 1.20981 0.91784 0.85688 1.03381 1.45640 1.11832 1.04422 1.73720 1.20007 0.89204 0.83536 0.77122 1.90747 1.16373 1.84728 1.49853 1.20890 0.98241 0.89425 1.07325 1.19669 0.93866 0.94686 0.91654 1.21071 0.98168 0.93731 0.98229 1.21119 0.93323 0.94872 0.97392 1.20900 1.06101 0.88567 0.96517 1.43502 0.99017 1.01865 1.00541 1.94562 1.53483 1.67895 1.21380 1.94550 1.60333 1.61914 1.20372 1.20771 0.94699 0.92786 0.98294 1.20501 1.01737 0.94189 0.88909 1.98432 1.93851 1.78133 1.29621 0.91541 0.77022 0.89730 0.89708 0.74919 0.86409 0.86236 0.82384 0.82167 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 13.05 55.50 0.72 -22.50 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 19.95 29.55 -169.99 -5.02 14.92 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -12.99 5.29 -10.97 -0.06 -13.05 16 10 C 0.43 9.16 7.85 -10.99 -0.09 9.08 16 11 O -0.60 -14.39 15.24 5.54 0.08 -14.31 16 12 C 0.11 1.83 6.15 -5.20 -0.03 1.80 16 13 N -0.70 -9.94 5.53 -61.47 -0.34 -10.28 16 14 C 0.52 6.57 7.82 -10.98 -0.09 6.49 16 15 O -0.54 -8.64 16.03 5.56 0.09 -8.55 16 16 C -0.12 -0.97 5.34 -29.03 -0.16 -1.13 16 17 C 0.00 0.02 4.38 -104.59 -0.46 -0.43 16 18 C -0.09 -0.65 9.68 -39.59 -0.38 -1.04 16 19 C -0.05 -0.37 9.55 -39.58 -0.38 -0.74 16 20 C -0.04 -0.36 6.85 -79.95 -0.55 -0.91 16 21 N 0.03 0.35 4.45 33.96 0.15 0.50 16 22 O -0.16 -1.92 18.45 -29.46 -0.54 -2.46 16 23 O -0.16 -1.83 18.45 -29.46 -0.54 -2.38 16 24 C -0.05 -0.42 9.34 -39.55 -0.37 -0.79 16 25 C -0.03 -0.24 6.31 -39.50 -0.25 -0.49 16 26 Cl -0.03 -0.29 27.40 -51.86 -1.42 -1.71 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 28 H 0.40 9.06 7.90 -40.82 -0.32 8.74 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.41 5.61 7.44 -40.82 -0.30 5.31 16 32 H 0.12 0.83 7.13 -51.93 -0.37 0.46 16 33 H 0.12 0.61 8.05 -51.93 -0.42 0.19 16 34 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.16 0.92 7.61 -52.49 -0.40 0.52 16 36 H 0.16 1.33 7.61 -52.49 -0.40 0.93 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -31.81 348.78 -7.60 -39.41 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -2.99 Total: 10.94 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.99 Total: 4.21 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.48 Total: -45.33 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.91 Total: -27.70 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.42 Total: -1.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.81 -7.60 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343498793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.521 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds