Wall clock time and date at job start Sat Apr 11 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48508 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.38949 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99350 * 0.02562 * 10 9 7 12 12 C 1.50690 * 120.00144 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.47072 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99968 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 12 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 12 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 18 18 C 1.38238 * 120.00712 * 264.72379 * 17 16 14 19 19 C 1.38216 * 120.01570 * 179.77053 * 18 17 16 20 20 C 1.38270 * 120.02366 * 0.50820 * 19 18 17 21 21 N 1.48022 * 119.99178 * 179.72393 * 20 19 18 22 22 O 1.21802 * 119.99765 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00010 * 0.02562 * 21 20 19 24 24 C 1.38192 * 120.01275 * 359.74491 * 20 19 18 25 25 C 1.38327 * 120.00751 * 84.99966 * 17 16 14 26 26 Cl 1.73596 * 120.01495 * 359.97438 * 25 17 16 27 27 H 0.97003 * 120.00445 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99993 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47343 * 60.00501 * 12 10 9 30 30 H 1.08998 * 109.47656 * 300.00359 * 12 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 13 12 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 33 33 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 34 34 H 1.08007 * 119.99065 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.98868 * 180.24720 * 19 18 17 36 36 H 1.07995 * 120.00641 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0014 14 6 1.7465 -7.2471 0.0023 15 8 0.5541 -7.4688 0.0087 16 6 2.7258 -8.3926 0.0021 17 6 1.9723 -9.6977 0.0100 18 6 1.7271 -10.3472 1.2054 19 6 1.0319 -11.5418 1.2132 20 6 0.5904 -12.0932 0.0246 21 7 -0.1487 -13.3756 0.0332 22 8 -0.5372 -13.8617 -1.0138 23 8 -0.3683 -13.9448 1.0875 24 6 0.8395 -11.4474 -1.1716 25 6 1.5308 -10.2488 -1.1795 26 17 1.8440 -9.4370 -2.6817 27 1 -0.4851 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0016 29 1 0.6168 -4.9209 -0.8876 30 1 0.6173 -4.9205 0.8923 31 1 3.1494 -5.7991 0.0011 32 1 3.3486 -8.3379 -0.8907 33 1 3.3563 -8.3317 0.8891 34 1 2.0753 -9.9190 2.1338 35 1 0.8371 -12.0468 2.1478 36 1 0.4943 -11.8780 -2.0999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343498793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:08 Heat of formation + Delta-G solvation = -80.829493 kcal Electronic energy + Delta-G solvation = -25492.977339 eV Core-core repulsion = 21198.460926 eV Total energy + Delta-G solvation = -4294.516413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.35747 -41.43996 -40.53108 -39.70713 -37.83272 -37.73382 -36.26348 -35.30437 -34.62982 -33.37880 -32.35096 -30.79522 -29.00322 -26.92469 -25.97950 -24.42917 -23.23000 -21.49272 -21.37568 -20.59969 -20.08045 -19.87972 -18.72879 -18.63705 -17.59201 -17.40071 -17.21923 -16.62651 -16.56417 -16.45979 -16.24993 -15.63394 -15.53320 -15.16036 -15.12748 -14.44681 -13.91744 -13.84562 -13.57670 -13.46598 -13.27589 -12.96305 -12.93003 -12.85968 -12.63440 -12.53451 -12.45016 -12.37175 -12.11882 -12.10218 -11.58339 -11.22638 -10.60304 -10.53168 -10.24715 -10.21539 -10.08849 -8.52039 -6.01989 -1.40825 -0.33728 0.09238 0.14537 0.82543 1.34510 1.42904 1.54636 1.56336 1.82155 1.90797 2.17359 2.33842 3.11612 3.15563 3.16796 3.23206 3.42063 3.55922 3.72119 3.83386 4.18716 4.22205 4.28999 4.40363 4.44169 4.45208 4.49706 4.61238 4.87632 4.97968 5.23834 5.25569 5.38222 5.91306 6.38543 6.43833 6.51075 7.03147 7.12881 7.44274 7.93689 8.64952 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.001941 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.927196 B =14424.736040 C =14653.393293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.088 0.912 9 N -0.562 5.562 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.122 3.878 13 N -0.704 5.704 14 C 0.519 3.481 15 O -0.572 6.572 16 C -0.112 4.112 17 C -0.004 4.004 18 C -0.083 4.083 19 C -0.042 4.042 20 C -0.050 4.050 21 N 0.032 4.968 22 O -0.187 6.187 23 O -0.157 6.157 24 C -0.052 4.052 25 C -0.036 4.036 26 Cl -0.039 7.039 27 H 0.279 0.721 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -21.373 1.443 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.106 0.894 9 N -0.197 5.197 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.006 4.006 13 N -0.359 5.359 14 C 0.307 3.693 15 O -0.452 6.452 16 C -0.151 4.151 17 C -0.005 4.005 18 C -0.101 4.101 19 C -0.061 4.061 20 C -0.134 4.134 21 N 0.548 4.452 22 O -0.398 6.398 23 O -0.376 6.376 24 C -0.072 4.072 25 C -0.063 4.063 26 Cl -0.009 7.009 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.149 0.851 33 H 0.177 0.823 34 H 0.211 0.789 35 H 0.199 0.801 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.939 -20.660 1.253 21.279 hybrid contribution -0.328 0.723 -0.502 0.939 sum 4.611 -19.936 0.751 20.476 Atomic orbital electron populations 1.69680 1.07009 1.29537 1.49468 1.26122 0.96521 1.02718 0.95908 0.84824 0.78219 0.76821 0.78218 1.19290 1.19835 1.19731 1.19763 0.92966 0.83509 1.50138 0.89449 1.41880 1.09604 1.04731 1.63488 1.20455 0.88158 0.85925 0.83448 1.90477 1.15062 1.87543 1.57950 1.20744 0.91729 0.83933 1.04155 1.45657 1.11507 1.04381 1.74310 1.20699 0.89503 0.83664 0.75473 1.90741 1.18181 1.85094 1.51184 1.20951 0.97335 0.86867 1.09943 1.19878 0.93853 0.94954 0.91861 1.21482 0.96811 0.92909 0.98918 1.21461 0.92339 0.94929 0.97380 1.21061 1.06847 0.87896 0.97569 1.43767 0.98830 1.02387 1.00197 1.94559 1.54794 1.68816 1.21591 1.94523 1.60284 1.62412 1.20344 1.20817 0.94911 0.92970 0.98506 1.20611 1.02336 0.94328 0.89052 1.98427 1.93927 1.78245 1.30342 0.91129 0.76779 0.89166 0.88642 0.74446 0.85140 0.82261 0.78901 0.80120 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.57 13.05 21.66 0.28 -47.29 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 1.00 40.59 29.55 68.60 2.03 42.62 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.33 -17.75 9.68 84.04 0.81 -16.94 16 8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -26.87 5.29 -306.99 -1.62 -28.49 16 10 C 0.43 18.49 7.85 87.65 0.69 19.18 16 11 O -0.62 -29.77 15.24 -3.08 -0.05 -29.82 16 12 C 0.12 3.95 6.15 85.63 0.53 4.47 16 13 N -0.70 -18.53 5.53 -466.79 -2.58 -21.11 16 14 C 0.52 11.93 7.82 87.66 0.69 12.62 16 15 O -0.57 -17.24 16.03 -3.04 -0.05 -17.29 16 16 C -0.11 -1.45 5.34 29.10 0.16 -1.29 16 17 C 0.00 -0.06 4.38 -19.84 -0.09 -0.14 16 18 C -0.08 -0.85 9.68 22.26 0.22 -0.64 16 19 C -0.04 -0.53 9.55 22.27 0.21 -0.32 16 20 C -0.05 -0.91 6.85 36.37 0.25 -0.66 16 21 N 0.03 0.71 4.45 -46.47 -0.21 0.50 16 22 O -0.19 -4.68 18.45 18.88 0.35 -4.34 16 23 O -0.16 -3.59 18.45 18.88 0.35 -3.25 16 24 C -0.05 -0.93 9.34 22.29 0.21 -0.72 16 25 C -0.04 -0.62 6.31 22.32 0.14 -0.48 16 26 Cl -0.04 -0.72 27.40 -2.72 -0.07 -0.79 16 27 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.40 18.40 7.90 -92.70 -0.73 17.67 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.42 10.49 7.44 -92.71 -0.69 9.80 16 32 H 0.13 1.43 7.13 -2.39 -0.02 1.42 16 33 H 0.16 0.83 8.05 -2.39 -0.02 0.81 16 34 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.18 1.49 7.61 -2.91 -0.02 1.47 16 36 H 0.16 2.73 7.61 -2.91 -0.02 2.71 16 Total: -1.00 -69.15 348.78 2.47 -66.68 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.23 Total: 27.61 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 4.28 Total: 14.95 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.13 Total: -96.39 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: 0.60 Total: -54.69 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -69.15 2.47 -66.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343498793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.145 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds