Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37092 * 119.99920 * 2 1 4 4 H 1.08009 * 119.99978 * 202.40792 * 3 2 1 5 5 C 1.38950 * 120.00499 * 22.40264 * 3 2 1 6 6 N 1.31419 * 119.99616 * 11.59856 * 5 3 2 7 7 Si 1.86796 * 120.00480 * 191.59639 * 5 3 2 8 8 H 1.48502 * 109.46947 * 59.99767 * 7 5 3 9 9 H 1.48500 * 109.47384 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46982 * 300.00442 * 7 5 3 11 11 C 1.34779 * 119.99797 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99680 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00154 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47099 * 180.02562 * 13 11 2 15 15 C 1.34780 * 120.00038 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.47774 * 119.99821 * 179.97438 * 15 14 13 18 18 C 1.39735 * 120.15691 * 90.25110 * 17 15 14 19 19 Cl 1.73602 * 120.09217 * 359.97438 * 18 17 15 20 20 C 1.38110 * 119.81565 * 180.22789 * 18 17 15 21 21 C 1.38317 * 120.12962 * 359.78905 * 20 18 17 22 22 C 1.38380 * 120.31638 * 359.97438 * 21 20 18 23 23 C 1.37945 * 120.18197 * 359.97438 * 22 21 20 24 24 N 1.48020 * 120.06703 * 180.02562 * 23 22 21 25 25 O 1.21802 * 119.99735 * 0.02562 * 24 23 22 26 26 O 1.21792 * 119.99889 * 179.72533 * 24 23 22 27 27 H 1.09001 * 109.47237 * 272.16245 * 1 2 3 28 28 H 1.09005 * 109.46964 * 32.16157 * 1 2 3 29 29 H 1.08997 * 109.46948 * 152.16144 * 1 2 3 30 30 H 0.96992 * 119.99760 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47093 * 59.99492 * 13 11 2 32 32 H 1.09002 * 109.46723 * 299.99736 * 13 11 2 33 33 H 0.97006 * 120.00212 * 359.97438 * 14 13 11 34 34 H 1.07995 * 119.93727 * 179.76256 * 20 18 17 35 35 H 1.07995 * 119.84235 * 179.97438 * 21 20 18 36 36 H 1.07994 * 119.90862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3566 5 6 1.5345 2.3453 0.4586 6 7 0.3896 2.2708 1.0995 7 14 2.3336 4.0078 0.1643 8 1 2.4815 4.2343 -1.2959 9 1 1.4831 5.0761 0.7478 10 1 3.6719 4.0345 0.8074 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 7 2.3373 -3.5858 0.0018 15 6 1.8881 -4.8565 0.0015 16 8 0.6929 -5.0786 0.0006 17 6 2.8484 -5.9797 0.0021 18 6 3.2997 -6.5167 1.2107 19 17 2.7343 -5.8658 2.7174 20 6 4.2009 -7.5632 1.2031 21 6 4.6525 -8.0819 0.0030 22 6 4.2054 -7.5575 -1.1970 23 6 3.3046 -6.5128 -1.2045 24 7 2.8275 -5.9542 -2.4896 25 8 3.2301 -6.4173 -3.5418 26 8 2.0283 -5.0352 -2.4948 27 1 -0.3634 0.0388 1.0269 28 1 -0.3633 0.8700 -0.5471 29 1 -0.3633 -0.9087 -0.4799 30 1 -0.0403 3.0790 1.4199 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8903 33 1 3.2911 -3.4086 0.0020 34 1 4.5539 -7.9772 2.1360 35 1 5.3575 -8.9000 0.0025 36 1 4.5627 -7.9672 -2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343774797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -30.802698 kcal Electronic energy + Delta-G solvation = -27119.713837 eV Core-core repulsion = 22827.366749 eV Total energy + Delta-G solvation = -4292.347088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45718 -40.42224 -39.12685 -38.20290 -37.10509 -36.67553 -35.00335 -33.95175 -32.64279 -31.94441 -31.66179 -28.07245 -26.97044 -26.09625 -24.61755 -23.74225 -22.99841 -20.99843 -19.63486 -19.32343 -18.81325 -18.04122 -17.70369 -16.92494 -16.56689 -16.41074 -16.02122 -15.51382 -15.45969 -15.05459 -14.48101 -14.28419 -14.10412 -13.85466 -13.54935 -13.13621 -12.72107 -12.42482 -12.27424 -12.11222 -11.76410 -11.59404 -11.55784 -11.35750 -11.27464 -11.24725 -11.22759 -10.88547 -10.44239 -10.35599 -10.26516 -10.05676 -9.63651 -9.07866 -8.88997 -8.59083 -7.77488 -6.36924 -3.94507 -0.63322 0.07162 0.94015 0.96581 1.48487 2.42887 2.51451 2.95111 3.15700 3.22484 3.26561 3.76265 3.81718 4.05357 4.11153 4.18476 4.20253 4.35748 4.68898 4.81039 4.99747 5.08069 5.12201 5.25524 5.51807 5.65468 5.93310 5.95819 6.11378 6.31649 6.51331 6.86312 7.20929 7.42661 7.51187 7.55113 8.00915 8.17818 8.39166 9.08655 9.32925 9.84363 10.66111 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.003094 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.314247 B = 9048.786624 C = 9766.530483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.434 5.434 3 C -0.309 4.309 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.879 5.879 7 Si 0.930 3.070 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.435 3.565 12 O -0.593 6.593 13 C 0.112 3.888 14 N -0.685 5.685 15 C 0.562 3.438 16 O -0.514 6.514 17 C -0.049 4.049 18 C -0.013 4.013 19 Cl -0.017 7.017 20 C -0.062 4.062 21 C -0.093 4.093 22 C -0.053 4.053 23 C -0.008 4.008 24 N 0.022 4.978 25 O -0.149 6.149 26 O -0.126 6.126 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.270 0.730 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.409 0.591 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 -21.178 0.780 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.151 5.151 3 C -0.437 4.437 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.518 5.518 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.222 3.778 12 O -0.480 6.480 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.344 3.656 16 O -0.390 6.390 17 C -0.054 4.054 18 C -0.042 4.042 19 Cl 0.013 6.987 20 C -0.080 4.080 21 C -0.112 4.112 22 C -0.072 4.072 23 C -0.091 4.091 24 N 0.544 4.456 25 O -0.365 6.365 26 O -0.346 6.346 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.056 -21.320 1.626 22.223 hybrid contribution 0.406 1.142 -0.217 1.231 sum 6.462 -20.178 1.409 21.235 Atomic orbital electron populations 1.21625 0.80638 0.99402 1.02124 1.43505 1.05796 1.04496 1.61328 1.19634 0.99620 0.83589 1.40842 0.88225 1.25374 0.96439 1.00180 0.95129 1.69995 1.17179 1.29619 1.34975 0.85945 0.78979 0.80604 0.78857 1.19783 1.20878 1.19768 1.19817 0.88056 0.84790 0.85093 1.90486 1.13733 1.86597 1.57139 1.21132 0.91536 0.85103 1.03663 1.45501 1.11826 1.03978 1.72403 1.17439 0.87624 0.82467 0.78050 1.90842 1.14446 1.84094 1.49647 1.19824 0.96705 0.98041 0.90837 1.20824 0.98551 0.97281 0.87497 1.98469 1.87700 1.84867 1.27708 1.21534 0.93161 0.92690 1.00636 1.21324 0.99718 1.00228 0.89926 1.21167 0.92395 0.92044 1.01593 1.21031 1.03810 1.01126 0.83160 1.43430 0.99746 1.00195 1.02179 1.94526 1.60185 1.62593 1.19199 1.94686 1.27123 1.19258 1.93496 0.91996 0.90895 0.94979 0.92024 0.89013 0.89388 0.75284 0.82239 0.82046 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 8.52 59.85 0.51 2.87 16 2 N -0.43 -11.01 3.02 -122.19 -0.37 -11.38 16 3 C -0.31 -8.51 9.29 -14.94 -0.14 -8.64 16 4 H 0.10 2.85 7.41 -52.48 -0.39 2.46 16 5 C 0.03 0.85 5.11 -17.46 -0.09 0.76 16 6 N -0.88 -23.09 10.62 55.50 0.59 -22.50 16 7 Si 0.93 20.52 29.57 -169.99 -5.03 15.49 16 8 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 11 C 0.43 10.43 7.70 -10.99 -0.08 10.35 16 12 O -0.59 -15.69 15.36 5.55 0.09 -15.61 16 13 C 0.11 2.20 4.68 -5.20 -0.02 2.18 16 14 N -0.68 -12.36 5.42 -62.46 -0.34 -12.70 16 15 C 0.56 9.61 3.71 -12.36 -0.05 9.57 16 16 O -0.51 -10.13 16.98 -3.78 -0.06 -10.20 16 17 C -0.05 -0.66 5.63 -104.94 -0.59 -1.25 16 18 C -0.01 -0.14 6.35 -39.07 -0.25 -0.39 16 19 Cl -0.02 -0.19 28.04 -51.86 -1.45 -1.65 16 20 C -0.06 -0.38 9.82 -39.60 -0.39 -0.77 16 21 C -0.09 -0.45 10.04 -39.50 -0.40 -0.85 16 22 C -0.05 -0.40 9.54 -39.64 -0.38 -0.78 16 23 C -0.01 -0.10 6.88 -79.55 -0.55 -0.64 16 24 N 0.02 0.33 4.45 34.16 0.15 0.48 16 25 O -0.15 -2.16 18.45 -29.46 -0.54 -2.70 16 26 O -0.13 -2.28 16.26 -33.33 -0.54 -2.82 16 27 H 0.06 1.42 7.54 -51.93 -0.39 1.03 16 28 H 0.07 1.70 7.06 -51.93 -0.37 1.33 16 29 H 0.03 0.60 6.36 -51.93 -0.33 0.27 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.09 1.75 7.41 -51.93 -0.38 1.37 16 32 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 33 H 0.41 7.37 7.42 -40.82 -0.30 7.06 16 34 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.16 0.14 8.06 -52.49 -0.42 -0.28 16 36 H 0.17 0.90 7.60 -52.49 -0.40 0.50 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -33.73 340.09 -7.77 -41.50 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -2.97 Total: 4.55 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -2.42 Total: 12.39 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.03 Total: -46.10 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.06 Total: -31.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.73 -7.77 -41.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343774797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.699 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds