Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37092 * 119.99920 * 2 1 4 4 H 1.08009 * 119.99978 * 202.40792 * 3 2 1 5 5 C 1.38950 * 120.00499 * 22.40264 * 3 2 1 6 6 N 1.31419 * 119.99616 * 11.59856 * 5 3 2 7 7 Si 1.86796 * 120.00480 * 191.59639 * 5 3 2 8 8 H 1.48502 * 109.46947 * 59.99767 * 7 5 3 9 9 H 1.48500 * 109.47384 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46982 * 300.00442 * 7 5 3 11 11 C 1.34779 * 119.99797 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99680 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00154 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47099 * 180.02562 * 13 11 2 15 15 C 1.34780 * 120.00038 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.47774 * 119.99821 * 179.97438 * 15 14 13 18 18 C 1.39735 * 120.15691 * 90.25110 * 17 15 14 19 19 Cl 1.73602 * 120.09217 * 359.97438 * 18 17 15 20 20 C 1.38110 * 119.81565 * 180.22789 * 18 17 15 21 21 C 1.38317 * 120.12962 * 359.78905 * 20 18 17 22 22 C 1.38380 * 120.31638 * 359.97438 * 21 20 18 23 23 C 1.37945 * 120.18197 * 359.97438 * 22 21 20 24 24 N 1.48020 * 120.06703 * 180.02562 * 23 22 21 25 25 O 1.21802 * 119.99735 * 0.02562 * 24 23 22 26 26 O 1.21792 * 119.99889 * 179.72533 * 24 23 22 27 27 H 1.09001 * 109.47237 * 272.16245 * 1 2 3 28 28 H 1.09005 * 109.46964 * 32.16157 * 1 2 3 29 29 H 1.08997 * 109.46948 * 152.16144 * 1 2 3 30 30 H 0.96992 * 119.99760 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47093 * 59.99492 * 13 11 2 32 32 H 1.09002 * 109.46723 * 299.99736 * 13 11 2 33 33 H 0.97006 * 120.00212 * 359.97438 * 14 13 11 34 34 H 1.07995 * 119.93727 * 179.76256 * 20 18 17 35 35 H 1.07995 * 119.84235 * 179.97438 * 21 20 18 36 36 H 1.07994 * 119.90862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3566 5 6 1.5345 2.3453 0.4586 6 7 0.3896 2.2708 1.0995 7 14 2.3336 4.0078 0.1643 8 1 2.4815 4.2343 -1.2959 9 1 1.4831 5.0761 0.7478 10 1 3.6719 4.0345 0.8074 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 7 2.3373 -3.5858 0.0018 15 6 1.8881 -4.8565 0.0015 16 8 0.6929 -5.0786 0.0006 17 6 2.8484 -5.9797 0.0021 18 6 3.2997 -6.5167 1.2107 19 17 2.7343 -5.8658 2.7174 20 6 4.2009 -7.5632 1.2031 21 6 4.6525 -8.0819 0.0030 22 6 4.2054 -7.5575 -1.1970 23 6 3.3046 -6.5128 -1.2045 24 7 2.8275 -5.9542 -2.4896 25 8 3.2301 -6.4173 -3.5418 26 8 2.0283 -5.0352 -2.4948 27 1 -0.3634 0.0388 1.0269 28 1 -0.3633 0.8700 -0.5471 29 1 -0.3633 -0.9087 -0.4799 30 1 -0.0403 3.0790 1.4199 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8903 33 1 3.2911 -3.4086 0.0020 34 1 4.5539 -7.9772 2.1360 35 1 5.3575 -8.9000 0.0025 36 1 4.5627 -7.9672 -2.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343774797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -54.017242 kcal Electronic energy + Delta-G solvation = -27120.720495 eV Core-core repulsion = 22827.366749 eV Total energy + Delta-G solvation = -4293.353746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.51267 -41.54144 -40.56022 -39.68616 -37.91964 -37.80368 -36.91400 -35.55358 -33.77066 -33.39668 -32.68408 -29.66089 -28.16663 -27.78915 -26.22799 -24.93655 -23.87354 -22.18138 -21.21944 -20.54692 -19.90736 -19.25477 -18.91120 -18.79049 -17.80532 -17.48375 -17.15046 -17.00852 -16.66880 -16.49354 -16.16739 -15.74099 -15.40437 -15.01844 -14.94911 -14.18153 -13.98960 -13.84127 -13.45158 -13.30492 -13.22434 -13.12186 -13.06107 -12.90202 -12.68042 -12.54949 -12.42690 -12.38977 -12.30876 -12.15025 -11.50529 -11.06485 -10.84249 -10.58598 -10.39689 -10.38024 -9.79438 -8.37842 -6.04890 -1.54758 -0.61323 0.01690 0.05045 0.67678 1.17201 1.36767 1.40715 1.51069 1.68295 1.86054 1.93675 2.26057 2.92608 3.04296 3.11498 3.12479 3.38045 3.66625 3.69133 3.81562 3.92390 4.28564 4.30876 4.38740 4.59011 4.65647 4.72660 4.93969 4.97653 5.03589 5.18976 5.32314 5.40603 5.99572 6.15407 6.26731 6.37391 6.79670 7.05649 7.33966 7.85465 8.63714 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.003094 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.314247 B = 9048.786624 C = 9766.530483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.449 5.449 3 C -0.348 4.348 4 H 0.078 0.922 5 C 0.000 4.000 6 N -0.893 5.893 7 Si 0.994 3.006 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.274 1.274 11 C 0.431 3.569 12 O -0.623 6.623 13 C 0.127 3.873 14 N -0.689 5.689 15 C 0.568 3.432 16 O -0.551 6.551 17 C -0.083 4.083 18 C -0.023 4.023 19 Cl -0.036 7.036 20 C -0.040 4.040 21 C -0.059 4.059 22 C -0.039 4.039 23 C -0.030 4.030 24 N 0.023 4.977 25 O -0.110 6.110 26 O -0.222 6.222 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.276 0.724 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.202 0.798 35 H 0.222 0.778 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -24.014 1.165 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.166 5.166 3 C -0.476 4.476 4 H 0.095 0.905 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.817 3.183 8 H -0.192 1.192 9 H -0.194 1.194 10 H -0.199 1.199 11 C 0.220 3.780 12 O -0.511 6.511 13 C 0.000 4.000 14 N -0.341 5.341 15 C 0.353 3.647 16 O -0.430 6.430 17 C -0.088 4.088 18 C -0.051 4.051 19 Cl -0.007 7.007 20 C -0.059 4.059 21 C -0.077 4.077 22 C -0.058 4.058 23 C -0.114 4.114 24 N 0.540 4.460 25 O -0.341 6.341 26 O -0.419 6.419 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.219 0.781 35 H 0.239 0.761 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.143 -24.041 2.085 25.468 hybrid contribution -0.094 1.750 -0.355 1.788 sum 8.049 -22.291 1.730 23.762 Atomic orbital electron populations 1.21562 0.79090 1.00416 1.01682 1.43735 1.06897 1.04480 1.61504 1.19649 0.99524 0.85321 1.43093 0.90459 1.26157 0.96898 1.03012 0.94165 1.70068 1.17709 1.30803 1.34474 0.84991 0.78013 0.76381 0.78925 1.19214 1.19371 1.19941 1.20438 0.87946 0.85814 0.83801 1.90445 1.15209 1.87334 1.58159 1.20870 0.91385 0.83663 1.04040 1.45499 1.11278 1.04263 1.73061 1.17927 0.87961 0.82727 0.76096 1.90790 1.16403 1.84706 1.51074 1.19572 0.98381 0.98062 0.92827 1.21092 0.99785 0.98616 0.85650 1.98464 1.88191 1.85464 1.28552 1.22139 0.90367 0.90087 1.03267 1.22060 0.98236 0.99739 0.87639 1.21763 0.90041 0.89721 1.04285 1.21262 1.06140 1.03184 0.80843 1.43866 0.99122 0.99686 1.03327 1.94447 1.58168 1.60945 1.20538 1.94706 1.30758 1.22379 1.94085 0.92877 0.92145 0.91787 0.91438 0.88718 0.88668 0.75422 0.78145 0.76114 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.31 8.52 127.77 1.09 6.40 16 2 N -0.45 -23.74 3.02 -658.88 -1.99 -25.73 16 3 C -0.35 -19.90 9.29 84.04 0.78 -19.12 16 4 H 0.08 4.66 7.41 -2.91 -0.02 4.64 16 5 C 0.00 0.01 5.11 84.93 0.43 0.45 16 6 N -0.89 -47.35 10.62 21.66 0.23 -47.12 16 7 Si 0.99 42.36 29.57 68.60 2.03 44.39 16 8 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 9 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.43 21.73 7.70 87.66 0.67 22.40 16 12 O -0.62 -34.68 15.36 -3.06 -0.05 -34.73 16 13 C 0.13 5.29 4.68 85.63 0.40 5.69 16 14 N -0.69 -26.44 5.42 -469.78 -2.54 -28.98 16 15 C 0.57 20.46 3.71 86.76 0.32 20.79 16 16 O -0.55 -23.08 16.98 4.79 0.08 -23.00 16 17 C -0.08 -2.24 5.63 -20.07 -0.11 -2.35 16 18 C -0.02 -0.44 6.35 22.60 0.14 -0.30 16 19 Cl -0.04 -0.81 28.04 -2.72 -0.08 -0.89 16 20 C -0.04 -0.30 9.82 22.26 0.22 -0.08 16 21 C -0.06 -0.18 10.04 22.32 0.22 0.05 16 22 C -0.04 -0.42 9.54 22.23 0.21 -0.21 16 23 C -0.03 -0.71 6.88 36.63 0.25 -0.46 16 24 N 0.02 0.70 4.45 -45.85 -0.20 0.50 16 25 O -0.11 -3.04 18.45 18.88 0.35 -2.70 16 26 O -0.22 -8.63 16.26 22.60 0.37 -8.26 16 27 H 0.05 2.51 7.54 -2.39 -0.02 2.49 16 28 H 0.06 2.89 7.06 -2.38 -0.02 2.87 16 29 H 0.06 2.47 6.36 -2.39 -0.02 2.46 16 30 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.09 3.85 7.41 -2.39 -0.02 3.83 16 32 H 0.10 3.78 8.11 -2.39 -0.02 3.76 16 33 H 0.41 15.72 7.42 -92.70 -0.69 15.03 16 34 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.22 -1.73 8.06 -2.91 -0.02 -1.76 16 36 H 0.19 0.99 7.60 -2.91 -0.02 0.97 16 Total: -1.00 -80.98 340.09 3.32 -77.66 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.48 Total: 15.61 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 4.64 Total: 33.24 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.51 Total: -101.33 kcal Atomic # 8 Polarization: -69.44 SS G_CDS: 0.75 Total: -68.69 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -80.98 3.32 -77.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343774797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.647 kcal (2) G-P(sol) polarization free energy of solvation -80.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds