Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99832 * 2 1 4 4 O 1.20826 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00258 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47323 * 180.02562 * 5 3 2 7 7 C 1.36898 * 120.00129 * 280.78183 * 6 5 3 8 8 H 1.07995 * 120.00451 * 315.99003 * 7 6 5 9 9 C 1.39027 * 119.99662 * 135.98962 * 7 6 5 10 10 N 1.31381 * 120.00318 * 338.47554 * 9 7 6 11 11 Si 1.86800 * 119.99770 * 158.47958 * 9 7 6 12 12 H 1.48498 * 109.47465 * 94.98065 * 11 9 7 13 13 H 1.48495 * 109.47271 * 214.98092 * 11 9 7 14 14 H 1.48501 * 109.47091 * 334.98335 * 11 9 7 15 15 C 1.34784 * 119.99949 * 100.78239 * 6 5 3 16 16 O 1.21623 * 120.00225 * 186.78844 * 15 6 5 17 17 C 1.47494 * 119.99783 * 6.78582 * 15 6 5 18 18 C 1.39808 * 120.08113 * 142.30633 * 17 15 6 19 19 C 1.38108 * 119.92228 * 180.22979 * 18 17 15 20 20 C 1.39557 * 119.99468 * 359.47405 * 19 18 17 21 21 C 1.38929 * 120.06171 * 0.55439 * 20 19 18 22 22 Cl 1.73599 * 119.90013 * 179.72354 * 21 20 19 23 23 C 1.37889 * 120.20423 * 359.69644 * 21 20 19 24 24 O 1.36388 * 108.58432 * 180.33416 * 20 19 18 25 25 C 1.44301 * 105.41729 * 342.29960 * 24 20 19 26 26 O 1.36538 * 131.41101 * 179.74837 * 19 18 17 27 27 H 1.09001 * 109.47389 * 60.00068 * 1 2 3 28 28 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47245 * 299.99479 * 1 2 3 30 30 H 1.09005 * 109.47026 * 59.99913 * 5 3 2 31 31 H 1.09002 * 109.47140 * 300.00766 * 5 3 2 32 32 H 0.96996 * 119.99729 * 185.05301 * 10 9 7 33 33 H 1.08004 * 120.04099 * 359.95375 * 18 17 15 34 34 H 1.08005 * 120.00485 * 180.02562 * 23 21 20 35 35 H 1.09001 * 111.00979 * 269.00981 * 25 24 20 36 36 H 1.09000 * 110.41205 * 146.10277 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 3.9624 3.3999 -1.1640 8 1 4.3413 2.9625 -2.0758 9 6 3.4552 4.6943 -1.1724 10 7 2.6295 5.0825 -0.2270 11 14 3.9475 5.8815 -2.5279 12 1 2.9264 5.8533 -3.6058 13 1 4.0428 7.2553 -1.9723 14 1 5.2648 5.4798 -3.0835 15 6 4.3825 3.2635 1.1470 16 8 4.6089 4.4581 1.1747 17 6 4.5467 2.4533 2.3686 18 6 5.5975 2.7210 3.2510 19 6 5.7509 1.9573 4.3914 20 6 4.8511 0.9268 4.6673 21 6 3.8074 0.6607 3.7898 22 17 2.6948 -0.6268 4.1335 23 6 3.6522 1.4165 2.6470 24 8 5.2134 0.3362 5.8421 25 6 6.5808 0.7383 6.0678 26 8 6.6764 2.0071 5.3941 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 2.2185 5.9599 -0.2724 33 1 6.2911 3.5213 3.0389 34 1 2.8394 1.2071 1.9672 35 1 7.2761 0.0204 5.6328 36 1 6.7712 0.8560 7.1346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348783435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -131.435366 kcal Electronic energy + Delta-G solvation = -28217.223473 eV Core-core repulsion = 23888.219873 eV Total energy + Delta-G solvation = -4329.003599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.33927 -41.68839 -40.44186 -38.68115 -37.66118 -37.33578 -37.19641 -36.10482 -34.05150 -31.73309 -31.42889 -30.00490 -27.81801 -27.24657 -26.48562 -24.56084 -24.21666 -22.43796 -21.47619 -19.85581 -19.25288 -18.61476 -18.57962 -18.33750 -17.82659 -17.34145 -17.19343 -16.63250 -16.46338 -16.19190 -15.96335 -15.55079 -15.29774 -15.16866 -14.77523 -14.41543 -14.39993 -14.10040 -14.00223 -13.79329 -13.38288 -12.95908 -12.86734 -12.82449 -12.72353 -12.68330 -12.58689 -12.17068 -12.10801 -11.74398 -11.62656 -11.38271 -10.86087 -10.36074 -9.93137 -9.32812 -9.27796 -8.16115 -5.98495 -0.46687 -0.23695 0.80604 1.35587 1.39585 1.47666 1.48536 1.56027 1.64653 2.00701 2.23564 2.36464 2.67288 2.94327 3.25745 3.27883 3.57714 3.73934 3.81852 3.86376 4.05756 4.11733 4.17151 4.25974 4.39004 4.41954 4.47171 4.50286 4.57750 4.74924 4.78696 4.89384 5.03111 5.50200 5.50343 5.81902 6.12903 6.88153 6.98423 7.07118 7.51121 8.11156 8.89390 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.005051 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.270129 B = 5541.913390 C = 7511.872753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.425 3.575 4 O -0.496 6.496 5 C 0.087 3.913 6 N -0.430 5.430 7 C -0.375 4.375 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.836 5.836 11 Si 0.970 3.030 12 H -0.272 1.272 13 H -0.295 1.295 14 H -0.256 1.256 15 C 0.506 3.494 16 O -0.561 6.561 17 C -0.089 4.089 18 C -0.059 4.059 19 C 0.051 3.949 20 C 0.053 3.947 21 C -0.019 4.019 22 Cl -0.035 7.035 23 C -0.095 4.095 24 O -0.302 6.302 25 C 0.201 3.799 26 O -0.311 6.311 27 H 0.051 0.949 28 H 0.138 0.862 29 H 0.051 0.949 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -15.959 8.948 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.265 3.735 4 O -0.381 6.381 5 C -0.038 4.038 6 N -0.150 5.150 7 C -0.502 4.502 8 H 0.115 0.885 9 C -0.180 4.180 10 N -0.467 5.467 11 Si 0.795 3.205 12 H -0.198 1.198 13 H -0.222 1.222 14 H -0.179 1.179 15 C 0.295 3.705 16 O -0.441 6.441 17 C -0.093 4.093 18 C -0.079 4.079 19 C 0.006 3.994 20 C 0.006 3.994 21 C -0.047 4.047 22 Cl -0.006 7.006 23 C -0.114 4.114 24 O -0.218 6.218 25 C 0.092 3.908 26 O -0.227 6.227 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.800 -14.975 9.322 18.044 hybrid contribution -0.587 0.972 -0.512 1.246 sum 3.213 -14.003 8.809 16.853 Atomic orbital electron populations 1.23429 0.75863 1.05345 1.01678 1.86512 1.24174 1.32726 1.84547 1.24994 0.93566 0.81663 0.73299 1.90844 1.66946 1.37175 1.43127 1.22023 0.86503 0.87394 1.07848 1.43029 1.55346 1.08859 1.07745 1.19333 1.44578 0.97573 0.88704 0.88525 1.26144 0.93118 1.00268 0.98500 1.70082 1.23454 1.19083 1.34131 0.85311 0.79426 0.77628 0.78174 1.19758 1.22167 1.17934 1.18068 0.81713 0.87207 0.83476 1.90633 1.53601 1.15844 1.84053 1.19819 0.96346 0.96547 0.96587 1.19983 0.98417 0.99737 0.89724 1.19267 0.91939 0.97034 0.91169 1.19423 0.96795 0.95242 0.87935 1.19513 0.94447 0.96332 0.94369 1.98373 1.60396 1.47045 1.94741 1.21198 0.99817 0.94341 0.96060 1.87445 1.31100 1.69501 1.33768 1.26431 0.80852 0.81173 1.02388 1.87408 1.55574 1.38453 1.41283 0.93050 0.84396 0.93017 0.85031 0.84661 0.93479 0.83732 0.83994 0.86458 0.81088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.36 -11.45 10.57 -51.44 -0.54 -11.99 16 3 C 0.42 16.99 5.98 71.23 0.43 17.41 16 4 O -0.50 -25.06 15.88 21.96 0.35 -24.71 16 5 C 0.09 3.27 5.47 85.63 0.47 3.74 16 6 N -0.43 -21.09 2.12 -643.26 -1.36 -22.45 16 7 C -0.38 -20.21 8.82 84.09 0.74 -19.47 16 8 H 0.10 4.82 7.92 -2.91 -0.02 4.80 16 9 C 0.03 1.70 4.28 84.95 0.36 2.07 16 10 N -0.84 -51.75 11.74 21.68 0.25 -51.50 16 11 Si 0.97 45.29 29.61 68.60 2.03 47.32 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 15 C 0.51 25.83 6.81 86.68 0.59 26.42 16 16 O -0.56 -33.68 14.38 -4.10 -0.06 -33.74 16 17 C -0.09 -3.58 5.39 -20.10 -0.11 -3.69 16 18 C -0.06 -2.09 9.63 22.62 0.22 -1.87 16 19 C 0.05 1.53 7.13 22.56 0.16 1.69 16 20 C 0.05 1.50 6.94 22.75 0.16 1.66 16 21 C -0.02 -0.57 6.32 22.35 0.14 -0.43 16 22 Cl -0.03 -0.90 28.95 -2.72 -0.08 -0.98 16 23 C -0.09 -3.33 7.12 22.55 0.16 -3.17 16 24 O -0.30 -7.03 11.42 -74.74 -0.85 -7.89 16 25 C 0.20 3.14 8.89 113.37 1.01 4.14 16 26 O -0.31 -7.69 11.41 -76.50 -0.87 -8.56 16 27 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 30 H 0.13 4.14 8.12 -2.38 -0.02 4.12 16 31 H 0.14 4.37 4.30 -2.39 -0.01 4.36 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.14 5.19 8.03 -2.91 -0.02 5.17 16 34 H 0.14 5.21 4.00 -2.91 -0.01 5.20 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.19 332.10 5.55 -73.64 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.17 Total: 10.37 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 5.52 Total: 30.48 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.11 Total: -73.95 kcal Atomic # 8 Polarization: -84.90 SS G_CDS: -1.98 Total: -86.88 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -79.19 5.55 -73.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348783435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.798 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds