Wall clock time and date at job start Sat Apr 11 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31597 * 122.22851 * 2 1 4 4 C 1.29941 * 117.13563 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36517 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00189 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00100 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00067 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.21852 * 319.30038 * 8 6 5 10 10 C 1.54482 * 110.24536 * 81.22691 * 8 6 5 11 11 C 1.54626 * 101.76295 * 93.58586 * 10 8 6 12 12 C 1.51284 * 104.19869 * 24.79603 * 11 10 8 13 13 O 1.21281 * 124.94416 * 163.74848 * 12 11 10 14 14 N 1.34621 * 110.14834 * 343.76835 * 12 11 10 15 15 C 1.46501 * 124.46973 * 179.53453 * 14 12 11 16 16 S 1.76141 * 109.27230 * 359.97438 * 4 3 2 17 17 C 1.34650 * 122.22986 * 179.97438 * 2 1 3 18 18 S 1.76195 * 125.93317 * 0.04629 * 17 2 1 19 19 C 1.76200 * 100.00402 * 179.97438 * 18 17 2 20 20 H 1.08003 * 119.99763 * 359.97438 * 19 18 17 21 21 C 1.38429 * 120.00408 * 179.97438 * 19 18 17 22 22 N 1.31807 * 119.99931 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99639 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47152 * 90.00125 * 23 21 19 25 25 H 1.48497 * 109.46932 * 209.99922 * 23 21 19 26 26 H 1.48498 * 109.47224 * 330.00005 * 23 21 19 27 27 H 1.09002 * 109.47364 * 270.02739 * 1 2 3 28 28 H 1.08998 * 109.47236 * 30.02515 * 1 2 3 29 29 H 1.08994 * 109.47191 * 150.02319 * 1 2 3 30 30 H 0.96997 * 119.99782 * 0.02562 * 5 4 3 31 31 H 1.08997 * 110.96816 * 211.69827 * 10 8 6 32 32 H 1.08991 * 110.97092 * 335.43053 * 10 8 6 33 33 H 1.08996 * 110.48709 * 143.47338 * 11 10 8 34 34 H 1.09002 * 110.48566 * 266.11708 * 11 10 8 35 35 H 1.08997 * 109.46982 * 270.02297 * 15 14 12 36 36 H 1.09001 * 109.46689 * 30.02535 * 15 14 12 37 37 H 1.09000 * 109.46921 * 150.02626 * 15 14 12 38 38 H 0.97002 * 119.99266 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7298 1.8101 0.0011 7 8 6.1355 0.6671 0.0001 8 6 6.7076 2.9567 0.0023 9 1 6.3621 3.7472 -0.6640 10 6 6.8860 3.5056 1.4353 11 6 8.1200 2.7129 1.9251 12 6 8.8498 2.3394 0.6536 13 8 10.0001 1.9592 0.5990 14 7 8.0372 2.4908 -0.4090 15 6 8.4278 2.2259 -1.7959 16 16 3.9346 -0.7099 0.0018 17 6 2.2251 -1.1390 0.0005 18 16 1.5697 -2.7745 0.0001 19 6 3.0666 -3.7041 0.0004 20 1 4.0188 -3.1944 0.0003 21 6 3.0222 -5.0877 0.0007 22 7 4.1420 -5.7830 0.0004 23 14 1.3753 -5.9693 0.0015 24 1 0.9383 -6.2032 -1.3983 25 1 1.5114 -7.2717 0.7018 26 1 0.3669 -5.1338 0.7018 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8901 -0.5134 30 1 4.0799 2.9688 0.0015 31 1 7.0910 4.5760 1.4203 32 1 6.0122 3.2863 2.0486 33 1 8.7499 3.3394 2.5564 34 1 7.8091 1.8176 2.4635 35 1 8.8356 3.1347 -2.2384 36 1 9.1836 1.4407 -1.8168 37 1 7.5547 1.9052 -2.3643 38 1 4.1108 -6.7525 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351669313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:29 Heat of formation + Delta-G solvation = -46.993689 kcal Electronic energy + Delta-G solvation = -24475.651705 eV Core-core repulsion = 20763.232194 eV Total energy + Delta-G solvation = -3712.419510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29071 -40.79562 -40.02194 -37.48092 -36.23127 -34.84241 -33.83913 -32.20415 -29.60734 -28.76638 -27.91845 -27.69641 -25.47930 -23.58176 -22.47961 -21.57909 -20.61594 -19.81609 -19.26622 -18.54282 -17.84759 -17.46222 -17.29363 -17.02020 -16.76407 -16.43384 -15.86942 -15.59777 -15.19233 -14.99906 -14.80843 -14.70456 -14.48530 -13.90193 -13.68137 -13.54650 -13.47212 -13.39517 -13.30711 -13.17852 -13.10871 -12.58218 -12.50017 -12.17766 -12.12221 -11.94492 -11.47380 -11.31307 -11.04322 -10.93563 -10.60185 -10.56533 -9.95544 -9.63036 -8.63475 -8.54655 -6.36657 -0.29763 0.15520 0.74963 1.04320 1.07672 1.21079 1.27576 1.38368 1.55733 1.64733 1.94147 1.99839 2.12564 2.49229 2.75594 3.16334 3.31164 3.37976 3.74862 3.83451 4.11128 4.21882 4.33931 4.37372 4.56537 4.65806 4.76134 4.77741 4.86363 4.89762 4.94196 5.00559 5.04163 5.28893 5.44635 5.58574 5.84125 5.97096 6.05661 6.70415 6.74964 6.82594 6.98070 8.49267 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003334 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.301468 B = 8395.359484 C = 9772.032047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.054 3.946 3 N -0.479 5.479 4 C 0.237 3.763 5 N -0.592 5.592 6 C 0.488 3.512 7 O -0.536 6.536 8 C 0.131 3.869 9 H 0.175 0.825 10 C -0.105 4.105 11 C -0.157 4.157 12 C 0.509 3.491 13 O -0.579 6.579 14 N -0.606 5.606 15 C 0.092 3.908 16 S 0.152 5.848 17 C -0.277 4.277 18 S 0.060 5.940 19 C -0.568 4.568 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.909 5.909 23 Si 0.915 3.085 24 H -0.252 1.252 25 H -0.255 1.255 26 H -0.217 1.217 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.442 0.558 31 H 0.148 0.852 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 24.731 0.727 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 N -0.201 5.201 4 C -0.136 4.136 5 N -0.246 5.246 6 C 0.274 3.726 7 O -0.410 6.410 8 C 0.023 3.977 9 H 0.192 0.808 10 C -0.142 4.142 11 C -0.197 4.197 12 C 0.300 3.700 13 O -0.459 6.459 14 N -0.338 5.338 15 C -0.049 4.049 16 S 0.398 5.602 17 C -0.511 4.511 18 S 0.305 5.695 19 C -0.716 4.716 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.545 5.545 23 Si 0.734 3.266 24 H -0.176 1.176 25 H -0.179 1.179 26 H -0.140 1.140 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.285 0.715 31 H 0.166 0.834 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.008 22.978 0.595 23.008 hybrid contribution 0.549 -0.681 -0.265 0.914 sum -0.459 22.297 0.330 22.304 Atomic orbital electron populations 1.20326 0.85103 1.03559 1.03516 1.19841 0.98656 0.83921 1.06297 1.66102 1.02428 1.30933 1.20669 1.24219 0.90348 0.92991 1.06007 1.42508 1.03516 1.08106 1.70435 1.22499 0.82301 0.92577 0.75247 1.90797 1.77477 1.24890 1.47830 1.21909 0.80454 0.92433 1.02905 0.80835 1.22815 0.98407 1.03060 0.89958 1.22454 0.98850 1.03339 0.95078 1.21712 0.85352 0.75182 0.87804 1.90696 1.19303 1.48698 1.87217 1.48121 1.11471 1.66544 1.07690 1.21686 1.01210 1.02218 0.79789 1.86689 1.02265 0.98469 1.72761 1.28084 1.01471 1.04476 1.17110 1.81884 1.10652 0.89597 1.87319 1.22852 0.93296 0.95465 1.59972 0.91626 1.25751 1.01391 0.96897 0.91873 1.70128 1.29191 1.08254 1.46920 0.85886 0.79200 0.80483 0.81058 1.17647 1.17871 1.14048 0.89827 0.89105 0.91007 0.71459 0.83409 0.86975 0.85021 0.88767 0.89106 0.93064 0.90483 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.02 71.24 0.71 -1.15 16 2 C 0.05 2.00 6.73 41.77 0.28 2.28 16 3 N -0.48 -16.06 10.55 -184.87 -1.95 -18.01 16 4 C 0.24 7.79 8.40 179.15 1.50 9.30 16 5 N -0.59 -12.27 5.40 -309.57 -1.67 -13.94 16 6 C 0.49 10.83 6.96 87.66 0.61 11.44 16 7 O -0.54 -18.79 14.09 -3.06 -0.04 -18.83 16 8 C 0.13 1.50 3.49 44.70 0.16 1.65 16 9 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 10 C -0.10 -0.62 6.69 31.65 0.21 -0.41 16 11 C -0.16 -2.33 6.85 30.59 0.21 -2.12 16 12 C 0.51 12.61 8.03 87.87 0.71 13.32 16 13 O -0.58 -20.18 17.60 -3.03 -0.05 -20.23 16 14 N -0.61 -11.90 2.56 -822.76 -2.11 -14.01 16 15 C 0.09 1.72 10.96 127.77 1.40 3.13 16 16 S 0.15 6.73 18.35 -56.49 -1.04 5.69 16 17 C -0.28 -12.20 6.67 67.00 0.45 -11.76 16 18 S 0.06 2.87 18.70 -56.49 -1.06 1.81 16 19 C -0.57 -33.01 9.80 67.87 0.67 -32.35 16 20 H 0.07 4.22 6.21 -2.91 -0.02 4.20 16 21 C 0.05 2.72 5.49 84.74 0.47 3.19 16 22 N -0.91 -55.32 13.98 21.59 0.30 -55.02 16 23 Si 0.91 40.86 27.73 68.60 1.90 42.76 16 24 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.22 -8.97 6.73 99.48 0.67 -8.30 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.07 7.37 -2.39 -0.02 2.05 16 30 H 0.44 4.67 8.82 -92.71 -0.82 3.85 16 31 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.11 0.48 7.89 -2.39 -0.02 0.46 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.25 7.93 -2.39 -0.02 1.23 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.28 15.64 8.32 -92.71 -0.77 14.87 16 Total: -1.00 -87.49 351.69 1.92 -85.57 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.27 Total: 7.70 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 7.37 Total: -3.49 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -5.43 Total: -100.98 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.10 Total: -39.06 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.90 Total: 42.76 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -2.09 Total: 7.51 kcal Total: -87.49 1.92 -85.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351669313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -87.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds