Wall clock time and date at job start Sat Apr 11 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31594 * 122.23445 * 2 1 4 4 C 1.29943 * 117.14174 * 180.26395 * 3 2 1 5 5 N 1.38894 * 125.36582 * 179.74926 * 4 3 2 6 6 C 1.34777 * 119.99780 * 180.02562 * 5 4 3 7 7 O 1.21289 * 120.00409 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99760 * 180.02562 * 6 5 4 9 9 H 1.08991 * 110.21642 * 40.70347 * 8 6 5 10 10 C 1.54482 * 110.24451 * 278.77323 * 8 6 5 11 11 C 1.54860 * 101.65868 * 266.39154 * 10 8 6 12 12 C 1.51278 * 104.21219 * 335.19373 * 11 10 8 13 13 O 1.21280 * 124.94428 * 196.24802 * 12 11 10 14 14 N 1.34422 * 110.11381 * 16.26674 * 12 11 10 15 15 C 1.46502 * 124.34746 * 180.39116 * 14 12 11 16 16 S 1.76142 * 109.26685 * 359.75228 * 4 3 2 17 17 C 1.34663 * 122.22931 * 179.79560 * 2 1 3 18 18 S 1.76195 * 125.92882 * 0.03473 * 17 2 1 19 19 C 1.76199 * 99.99828 * 179.71660 * 18 17 2 20 20 H 1.08004 * 120.00439 * 359.97438 * 19 18 17 21 21 C 1.38431 * 119.99970 * 180.02562 * 19 18 17 22 22 N 1.31814 * 119.99880 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00252 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00678 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00428 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00139 * 23 21 19 27 27 H 1.09002 * 109.47000 * 270.20977 * 1 2 3 28 28 H 1.08998 * 109.46963 * 30.20189 * 1 2 3 29 29 H 1.08997 * 109.46856 * 150.20387 * 1 2 3 30 30 H 0.96994 * 120.00037 * 0.03028 * 5 4 3 31 31 H 1.08995 * 110.96995 * 24.53256 * 10 8 6 32 32 H 1.08991 * 110.96815 * 148.30037 * 10 8 6 33 33 H 1.08997 * 110.46487 * 216.51572 * 11 10 8 34 34 H 1.09006 * 110.60542 * 93.94007 * 11 10 8 35 35 H 1.09003 * 109.46647 * 270.01745 * 15 14 12 36 36 H 1.09002 * 109.47155 * 30.01792 * 15 14 12 37 37 H 1.08997 * 109.47043 * 150.02294 * 15 14 12 38 38 H 0.97005 * 119.99830 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9978 -0.0053 5 7 4.4044 2.0546 -0.0112 6 6 5.7298 1.8099 -0.0169 7 8 6.1355 0.6669 -0.0174 8 6 6.7077 2.9566 -0.0227 9 1 6.3652 3.7471 0.6449 10 6 6.8798 3.5051 -1.4566 11 6 8.1140 2.7101 -1.9497 12 6 8.8477 2.3383 -0.6801 13 8 9.9981 1.9578 -0.6287 14 7 8.0390 2.4906 0.3828 15 6 8.4355 2.2253 1.7679 16 16 3.9345 -0.7100 -0.0040 17 6 2.2251 -1.1391 0.0041 18 16 1.5696 -2.7746 0.0090 19 6 3.0664 -3.7041 0.0042 20 1 4.0187 -3.1945 -0.0008 21 6 3.0220 -5.0877 0.0058 22 7 4.1418 -5.7831 0.0027 23 14 1.3752 -5.9693 0.0138 24 1 0.9447 -6.2014 1.4159 25 1 0.3636 -5.1346 -0.6829 26 1 1.5080 -7.2726 -0.6855 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3633 -0.8918 -0.5107 30 1 4.0800 2.9687 -0.0111 31 1 6.0035 3.2850 -2.0662 32 1 7.0848 4.5754 -1.4427 33 1 8.7419 3.3359 -2.5839 34 1 7.8034 1.8141 -2.4872 35 1 8.2225 1.1849 2.0138 36 1 9.5028 2.4147 1.8830 37 1 7.8762 2.8787 2.4374 38 1 4.1106 -6.7527 0.0042 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351669314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:31 Heat of formation + Delta-G solvation = -47.088101 kcal Electronic energy + Delta-G solvation = -24475.665660 eV Core-core repulsion = 20763.242056 eV Total energy + Delta-G solvation = -3712.423604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29250 -40.80023 -40.02264 -37.48113 -36.22993 -34.84185 -33.82977 -32.20267 -29.61171 -28.76654 -27.91882 -27.69426 -25.47940 -23.58172 -22.48300 -21.58384 -20.61587 -19.82018 -19.26474 -18.54453 -17.84815 -17.46037 -17.29199 -17.01767 -16.75754 -16.47613 -15.86351 -15.59141 -15.19737 -15.00033 -14.79923 -14.67134 -14.48457 -13.93190 -13.66928 -13.53918 -13.47521 -13.39442 -13.27533 -13.19382 -13.08954 -12.58226 -12.47935 -12.16059 -12.14193 -11.94972 -11.48255 -11.31205 -11.05115 -10.93516 -10.60294 -10.56483 -9.96890 -9.63054 -8.63464 -8.54686 -6.36728 -0.29680 0.15585 0.75055 1.04254 1.07804 1.21443 1.27612 1.38222 1.55934 1.65057 1.93725 2.00591 2.12484 2.49132 2.75494 3.16557 3.31428 3.37956 3.74995 3.83632 4.10232 4.27671 4.33264 4.37386 4.52029 4.65907 4.76992 4.79119 4.86288 4.89787 4.94302 5.00668 5.04289 5.29013 5.44711 5.58481 5.84185 5.97756 6.05587 6.70805 6.74859 6.82808 6.98118 8.49223 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003334 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.173655 B = 8395.091403 C = 9772.569363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.054 3.946 3 N -0.479 5.479 4 C 0.237 3.763 5 N -0.592 5.592 6 C 0.488 3.512 7 O -0.536 6.536 8 C 0.131 3.869 9 H 0.176 0.824 10 C -0.105 4.105 11 C -0.158 4.158 12 C 0.509 3.491 13 O -0.580 6.580 14 N -0.605 5.605 15 C 0.089 3.911 16 S 0.151 5.849 17 C -0.277 4.277 18 S 0.061 5.939 19 C -0.568 4.568 20 H 0.066 0.934 21 C 0.047 3.953 22 N -0.909 5.909 23 Si 0.915 3.085 24 H -0.252 1.252 25 H -0.217 1.217 26 H -0.255 1.255 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.442 0.558 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 24.929 -0.692 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 N -0.201 5.201 4 C -0.135 4.135 5 N -0.246 5.246 6 C 0.274 3.726 7 O -0.411 6.411 8 C 0.023 3.977 9 H 0.193 0.807 10 C -0.142 4.142 11 C -0.198 4.198 12 C 0.299 3.701 13 O -0.460 6.460 14 N -0.336 5.336 15 C -0.052 4.052 16 S 0.397 5.603 17 C -0.512 4.512 18 S 0.306 5.694 19 C -0.716 4.716 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.545 5.545 23 Si 0.734 3.266 24 H -0.176 1.176 25 H -0.141 1.141 26 H -0.179 1.179 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.286 0.714 31 H 0.130 0.870 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.016 23.178 -0.559 23.207 hybrid contribution 0.564 -0.711 0.255 0.943 sum -0.452 22.467 -0.304 22.474 Atomic orbital electron populations 1.20326 0.85095 1.03584 1.03496 1.19846 0.98657 0.83917 1.06288 1.66100 1.02417 1.30930 1.20680 1.24220 0.90349 0.92985 1.05986 1.42507 1.03512 1.08096 1.70448 1.22519 0.82303 0.92586 0.75222 1.90796 1.77480 1.24937 1.47837 1.21933 0.80340 0.92403 1.03033 0.80677 1.22860 0.98392 1.03046 0.89908 1.22497 0.98843 1.03327 0.95133 1.21651 0.85377 0.75195 0.87845 1.90697 1.19346 1.48726 1.87213 1.48065 1.11473 1.66399 1.07711 1.21730 1.02139 1.01168 0.80200 1.86696 1.02286 0.98517 1.72764 1.28087 1.01459 1.04483 1.17126 1.81879 1.10641 0.89595 1.87325 1.22853 0.93297 0.95469 1.59969 0.91646 1.25757 1.01407 0.96897 0.91871 1.70131 1.29199 1.08254 1.46928 0.85880 0.79179 0.80469 0.81059 1.17637 1.14059 1.17870 0.89874 0.89058 0.90997 0.71447 0.86988 0.83352 0.85055 0.88816 0.94805 0.90606 0.86970 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.02 71.24 0.71 -1.15 16 2 C 0.05 2.00 6.73 41.77 0.28 2.28 16 3 N -0.48 -16.08 10.55 -184.86 -1.95 -18.03 16 4 C 0.24 7.82 8.40 179.15 1.50 9.32 16 5 N -0.59 -12.28 5.40 -309.56 -1.67 -13.95 16 6 C 0.49 10.87 6.96 87.66 0.61 11.48 16 7 O -0.54 -18.94 14.09 -3.06 -0.04 -18.99 16 8 C 0.13 1.48 3.49 44.70 0.16 1.64 16 9 H 0.18 0.15 8.14 -2.39 -0.02 0.13 16 10 C -0.10 -0.61 6.71 31.73 0.21 -0.40 16 11 C -0.16 -2.35 6.86 30.67 0.21 -2.14 16 12 C 0.51 12.62 8.02 87.90 0.71 13.33 16 13 O -0.58 -20.21 17.60 -3.03 -0.05 -20.26 16 14 N -0.60 -11.85 2.55 -823.07 -2.10 -13.95 16 15 C 0.09 1.66 10.95 127.77 1.40 3.06 16 16 S 0.15 6.72 18.35 -56.49 -1.04 5.68 16 17 C -0.28 -12.24 6.67 67.00 0.45 -11.79 16 18 S 0.06 2.88 18.70 -56.49 -1.06 1.82 16 19 C -0.57 -33.08 9.80 67.87 0.67 -32.41 16 20 H 0.07 4.22 6.21 -2.91 -0.02 4.20 16 21 C 0.05 2.71 5.49 84.74 0.47 3.18 16 22 N -0.91 -55.42 13.98 21.59 0.30 -55.12 16 23 Si 0.92 40.92 27.73 68.60 1.90 42.83 16 24 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.22 -8.98 6.73 99.48 0.67 -8.31 16 26 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.07 7.37 -2.39 -0.02 2.05 16 30 H 0.44 4.64 8.82 -92.71 -0.82 3.82 16 31 H 0.11 0.47 7.89 -2.39 -0.02 0.45 16 32 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.47 7.93 -2.39 -0.02 1.45 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.28 15.67 8.32 -92.70 -0.77 14.90 16 Total: -1.00 -88.22 351.68 1.93 -86.29 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.27 Total: 7.29 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 7.37 Total: -3.61 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -5.42 Total: -101.05 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.10 Total: -39.25 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.90 Total: 42.83 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -2.09 Total: 7.50 kcal Total: -88.22 1.93 -86.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351669314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.201 kcal (2) G-P(sol) polarization free energy of solvation -88.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds