Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39707 * 120.12044 * 260.27853 * 3 2 1 5 5 C 1.37831 * 119.86876 * 179.76871 * 4 3 2 6 6 C 1.38661 * 120.12728 * 0.50899 * 5 4 3 7 7 F 1.35094 * 119.87741 * 179.72011 * 6 5 4 8 8 C 1.38618 * 120.25052 * 359.74200 * 6 5 4 9 9 C 1.50693 * 119.93857 * 179.97438 * 8 6 5 10 10 S 1.81400 * 109.47554 * 270.02381 * 9 8 6 11 11 O 1.42106 * 110.54035 * 291.62883 * 10 9 8 12 12 O 1.42101 * 110.54504 * 68.37041 * 10 9 8 13 13 N 1.65593 * 104.45441 * 179.97438 * 10 9 8 14 14 C 1.46505 * 120.00031 * 64.99824 * 13 10 9 15 15 C 1.50697 * 109.47422 * 165.00018 * 14 13 10 16 16 O 1.21292 * 119.99476 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00214 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00178 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00348 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99411 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47215 * 59.99758 * 22 20 18 24 24 H 1.48498 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46742 * 299.99713 * 22 20 18 26 26 C 1.37874 * 120.12262 * 0.02562 * 8 6 5 27 27 H 1.08000 * 120.06696 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.93553 * 180.24781 * 5 4 3 29 29 H 1.09001 * 109.47382 * 30.02378 * 9 8 6 30 30 H 1.09003 * 109.47479 * 150.02385 * 9 8 6 31 31 H 0.96996 * 120.00231 * 244.99529 * 13 10 9 32 32 H 1.09003 * 109.47139 * 285.00308 * 14 13 10 33 33 H 1.09007 * 109.46832 * 44.99927 * 14 13 10 34 34 H 0.97003 * 119.99747 * 0.02562 * 17 15 14 35 35 H 0.96999 * 119.99751 * 179.97438 * 21 20 18 36 36 H 1.08005 * 120.05877 * 180.02562 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2050 1.1911 5 6 4.6473 0.1998 1.1859 6 6 5.3381 0.0029 -0.0001 7 9 6.6890 0.0044 -0.0003 8 6 4.6477 -0.1952 -1.1857 9 6 5.4056 -0.4080 -2.4707 10 16 5.7083 1.1936 -3.2667 11 8 4.4896 1.7577 -3.7315 12 8 6.6280 1.9634 -2.5045 13 7 6.5387 0.8178 -4.6492 14 6 5.8892 0.0353 -5.7039 15 6 6.6924 0.1409 -6.9746 16 8 7.7077 0.8041 -6.9969 17 7 6.2832 -0.5024 -8.0860 18 6 7.0136 -0.4059 -9.2422 19 1 7.9173 0.1853 -9.2622 20 6 6.5914 -1.0687 -10.3881 21 7 5.4921 -1.7884 -10.3634 22 14 7.5870 -0.9378 -11.9632 23 1 8.9559 -1.4634 -11.7286 24 1 6.9284 -1.7304 -13.0324 25 1 7.6678 0.4849 -12.3808 26 6 3.2690 -0.1968 -1.1917 27 1 2.7319 0.3634 2.1146 28 1 5.1902 0.3537 2.1068 29 1 6.3580 -0.8922 -2.2549 30 1 4.8195 -1.0402 -3.1378 31 1 7.4550 1.1156 -4.7608 32 1 5.8298 -1.0090 -5.3973 33 1 4.8844 0.4212 -5.8761 34 1 5.4714 -1.0331 -8.0680 35 1 5.1972 -2.2508 -11.1634 36 1 2.7322 -0.3516 -2.1160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352509284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -95.480944 kcal Electronic energy + Delta-G solvation = -25986.265757 eV Core-core repulsion = 21705.530506 eV Total energy + Delta-G solvation = -4280.735252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.48960 -40.04876 -38.49709 -37.15749 -36.88611 -36.01299 -34.74182 -33.86778 -33.76014 -31.61954 -31.40097 -28.14461 -27.22693 -24.41266 -24.37323 -23.11680 -19.79916 -19.65118 -18.91416 -18.20408 -18.17500 -17.83528 -17.40954 -16.78436 -16.12271 -15.97223 -15.60380 -15.12857 -14.89547 -14.70024 -14.42414 -14.40598 -14.34461 -14.21871 -14.08505 -13.72453 -13.43931 -12.96703 -12.69923 -12.62252 -12.55896 -12.37391 -12.14500 -12.03401 -11.97146 -11.82501 -11.59011 -11.40657 -11.13430 -10.52577 -10.33224 -9.77657 -9.65344 -9.47871 -9.21321 -8.65435 -8.13279 -6.54796 -3.96560 -0.17515 0.09016 0.56914 2.19452 2.25441 2.62491 3.12026 3.17182 3.20225 3.24132 3.26022 3.49053 3.52029 3.69081 3.84200 3.90399 4.06835 4.12507 4.33889 4.51245 4.68396 4.78390 4.86135 5.10520 5.12108 5.21019 5.30756 5.32731 5.38739 5.51225 5.64452 5.74421 6.01115 6.20534 7.01164 7.17424 7.43511 7.89862 8.42374 9.02302 9.35406 9.84020 10.62096 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002444 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.379550 B =11455.837411 C =12382.959969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.254 3.746 3 C -0.036 4.036 4 C -0.034 4.034 5 C -0.151 4.151 6 C 0.145 3.855 7 F -0.117 7.117 8 C -0.124 4.124 9 C -0.598 4.598 10 S 2.612 3.388 11 O -0.945 6.945 12 O -0.947 6.947 13 N -1.096 6.096 14 C 0.100 3.900 15 C 0.433 3.567 16 O -0.588 6.588 17 N -0.551 5.551 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.028 4.028 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.428 0.572 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.395 0.605 35 H 0.275 0.725 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -1.511 22.586 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.062 4.062 3 C -0.039 4.039 4 C -0.055 4.055 5 C -0.170 4.170 6 C 0.124 3.876 7 F -0.095 7.095 8 C -0.127 4.127 9 C -0.724 4.724 10 S 2.702 3.298 11 O -0.935 6.935 12 O -0.937 6.937 13 N -0.861 5.861 14 C -0.030 4.030 15 C 0.217 3.783 16 O -0.474 6.474 17 N -0.187 5.187 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.050 4.050 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.268 0.732 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.462 -0.406 22.663 23.316 hybrid contribution 1.093 -1.087 -0.946 1.808 sum -4.369 -1.493 21.718 22.203 Atomic orbital electron populations 1.81303 1.11813 1.08148 1.06606 1.25405 0.92297 0.94146 0.94369 1.15912 0.84946 1.08268 0.94794 1.21145 0.93139 0.93858 0.97324 1.21129 0.94373 1.03737 0.97738 1.17838 0.77625 0.98251 0.93883 1.91599 1.27903 1.92863 1.97124 1.18891 0.93685 1.07486 0.92662 1.29773 1.10344 1.26890 1.05344 1.05085 0.74589 0.76270 0.73861 1.93621 1.47224 1.73685 1.78948 1.93621 1.62922 1.65965 1.71150 1.55196 1.29056 1.70528 1.31301 1.21023 0.97477 0.95486 0.89051 1.19564 0.88107 0.85709 0.84873 1.90519 1.27258 1.45191 1.84388 1.41808 1.24854 1.43229 1.08807 1.19690 1.07734 1.29359 0.86664 0.87709 1.25307 0.96599 0.95991 0.99759 1.69594 1.22230 1.31138 1.30710 0.85873 0.79380 0.78587 0.80151 1.19779 1.20873 1.19753 1.21139 0.92039 0.93531 0.98253 0.83289 0.82731 0.83003 0.82818 0.73222 0.90169 0.88552 0.77121 0.91546 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.50 18.54 41.83 0.78 -3.73 16 2 C 0.25 2.17 15.33 -22.47 -0.34 1.83 16 3 C -0.04 -0.24 5.73 -106.89 -0.61 -0.85 16 4 C -0.03 -0.16 9.75 -39.18 -0.38 -0.54 16 5 C -0.15 -0.80 10.01 -39.57 -0.40 -1.19 16 6 C 0.15 1.16 7.25 -39.29 -0.28 0.87 16 7 F -0.12 -1.11 16.46 2.25 0.04 -1.07 16 8 C -0.12 -1.01 5.14 -104.62 -0.54 -1.55 16 9 C -0.60 -4.79 6.01 36.00 0.22 -4.58 16 10 S 2.61 32.95 5.44 -107.50 -0.58 32.36 16 11 O -0.95 -14.30 17.50 -57.54 -1.01 -15.31 16 12 O -0.95 -14.51 18.08 -57.54 -1.04 -15.55 16 13 N -1.10 -15.83 5.82 -11.65 -0.07 -15.89 16 14 C 0.10 1.52 6.61 -5.19 -0.03 1.49 16 15 C 0.43 9.41 7.85 -10.99 -0.09 9.32 16 16 O -0.59 -14.85 15.30 5.55 0.08 -14.77 16 17 N -0.55 -12.98 5.29 -10.96 -0.06 -13.04 16 18 C -0.31 -8.06 9.68 -14.93 -0.14 -8.21 16 19 H 0.11 2.91 7.16 -52.48 -0.38 2.53 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.15 13.05 55.50 0.72 -22.42 16 22 Si 0.93 20.17 29.55 -169.99 -5.02 15.15 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.03 -0.20 9.40 -39.18 -0.37 -0.57 16 27 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 28 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 29 H 0.15 1.00 7.63 -51.92 -0.40 0.60 16 30 H 0.15 0.79 8.08 -51.92 -0.42 0.37 16 31 H 0.43 6.72 7.66 -34.46 -0.26 6.46 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.34 7.70 -51.93 -0.40 0.94 16 34 H 0.40 8.69 7.90 -40.82 -0.32 8.37 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -35.46 351.37 -6.94 -42.40 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.00 Total: 9.98 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.07 Total: -3.41 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.37 Total: -55.08 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.96 Total: -45.62 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 32.95 SS G_CDS: -0.58 Total: 32.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.46 -6.94 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352509284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.079 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds