Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39707 * 120.12044 * 260.27853 * 3 2 1 5 5 C 1.37831 * 119.86876 * 179.76871 * 4 3 2 6 6 C 1.38661 * 120.12728 * 0.50899 * 5 4 3 7 7 F 1.35094 * 119.87741 * 179.72011 * 6 5 4 8 8 C 1.38618 * 120.25052 * 359.74200 * 6 5 4 9 9 C 1.50693 * 119.93857 * 179.97438 * 8 6 5 10 10 S 1.81400 * 109.47554 * 270.02381 * 9 8 6 11 11 O 1.42106 * 110.54035 * 291.62883 * 10 9 8 12 12 O 1.42101 * 110.54504 * 68.37041 * 10 9 8 13 13 N 1.65593 * 104.45441 * 179.97438 * 10 9 8 14 14 C 1.46505 * 120.00031 * 64.99824 * 13 10 9 15 15 C 1.50697 * 109.47422 * 165.00018 * 14 13 10 16 16 O 1.21292 * 119.99476 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00214 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00178 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00348 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99411 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47215 * 59.99758 * 22 20 18 24 24 H 1.48498 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46742 * 299.99713 * 22 20 18 26 26 C 1.37874 * 120.12262 * 0.02562 * 8 6 5 27 27 H 1.08000 * 120.06696 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.93553 * 180.24781 * 5 4 3 29 29 H 1.09001 * 109.47382 * 30.02378 * 9 8 6 30 30 H 1.09003 * 109.47479 * 150.02385 * 9 8 6 31 31 H 0.96996 * 120.00231 * 244.99529 * 13 10 9 32 32 H 1.09003 * 109.47139 * 285.00308 * 14 13 10 33 33 H 1.09007 * 109.46832 * 44.99927 * 14 13 10 34 34 H 0.97003 * 119.99747 * 0.02562 * 17 15 14 35 35 H 0.96999 * 119.99751 * 179.97438 * 21 20 18 36 36 H 1.08005 * 120.05877 * 180.02562 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2050 1.1911 5 6 4.6473 0.1998 1.1859 6 6 5.3381 0.0029 -0.0001 7 9 6.6890 0.0044 -0.0003 8 6 4.6477 -0.1952 -1.1857 9 6 5.4056 -0.4080 -2.4707 10 16 5.7083 1.1936 -3.2667 11 8 4.4896 1.7577 -3.7315 12 8 6.6280 1.9634 -2.5045 13 7 6.5387 0.8178 -4.6492 14 6 5.8892 0.0353 -5.7039 15 6 6.6924 0.1409 -6.9746 16 8 7.7077 0.8041 -6.9969 17 7 6.2832 -0.5024 -8.0860 18 6 7.0136 -0.4059 -9.2422 19 1 7.9173 0.1853 -9.2622 20 6 6.5914 -1.0687 -10.3881 21 7 5.4921 -1.7884 -10.3634 22 14 7.5870 -0.9378 -11.9632 23 1 8.9559 -1.4634 -11.7286 24 1 6.9284 -1.7304 -13.0324 25 1 7.6678 0.4849 -12.3808 26 6 3.2690 -0.1968 -1.1917 27 1 2.7319 0.3634 2.1146 28 1 5.1902 0.3537 2.1068 29 1 6.3580 -0.8922 -2.2549 30 1 4.8195 -1.0402 -3.1378 31 1 7.4550 1.1156 -4.7608 32 1 5.8298 -1.0090 -5.3973 33 1 4.8844 0.4212 -5.8761 34 1 5.4714 -1.0331 -8.0680 35 1 5.1972 -2.2508 -11.1634 36 1 2.7322 -0.3516 -2.1160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352509284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -123.346297 kcal Electronic energy + Delta-G solvation = -25987.474090 eV Core-core repulsion = 21705.530506 eV Total energy + Delta-G solvation = -4281.943584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.10973 -40.56339 -40.23119 -38.23617 -37.59943 -37.08387 -36.30341 -35.35714 -34.40736 -33.30658 -32.13820 -28.78401 -28.67488 -26.13133 -24.95364 -23.62816 -21.39184 -20.63649 -20.04162 -19.61350 -19.00021 -18.72217 -18.00123 -17.80851 -17.25855 -17.12983 -16.67254 -16.44263 -16.10195 -15.96640 -15.58030 -15.31579 -15.07503 -14.95510 -14.85351 -14.61847 -14.25674 -14.04122 -13.83575 -13.59556 -13.56985 -13.36960 -13.27264 -13.15493 -13.14724 -13.07339 -12.90439 -12.43474 -12.36329 -12.13584 -12.11098 -11.53314 -10.70096 -10.43960 -10.13218 -10.04154 -9.83097 -8.48028 -5.96791 -1.01199 -0.50051 0.05840 1.39961 1.44129 1.52704 1.54149 1.62410 1.68224 1.98541 2.30317 2.57900 2.65470 2.73986 2.97629 3.06903 3.14008 3.19979 3.23204 3.58791 3.85492 3.94294 4.02181 4.21157 4.34393 4.43896 4.50125 4.61882 4.75573 4.77796 4.86514 4.91647 5.06668 5.41518 5.54219 5.89974 6.02092 6.37408 6.55506 7.09590 7.51058 8.04575 8.68429 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002444 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.379550 B =11455.837411 C =12382.959969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.280 3.720 3 C -0.044 4.044 4 C -0.014 4.014 5 C -0.145 4.145 6 C 0.129 3.871 7 F -0.129 7.129 8 C -0.145 4.145 9 C -0.570 4.570 10 S 2.610 3.390 11 O -0.979 6.979 12 O -0.982 6.982 13 N -1.108 6.108 14 C 0.106 3.894 15 C 0.431 3.569 16 O -0.629 6.629 17 N -0.562 5.562 18 C -0.337 4.337 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.914 5.914 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.029 4.029 27 H 0.181 0.819 28 H 0.183 0.817 29 H 0.171 0.829 30 H 0.190 0.810 31 H 0.421 0.579 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.402 0.598 35 H 0.279 0.721 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -2.870 24.208 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.035 4.035 3 C -0.048 4.048 4 C -0.035 4.035 5 C -0.163 4.163 6 C 0.108 3.892 7 F -0.108 7.108 8 C -0.148 4.148 9 C -0.700 4.700 10 S 2.706 3.294 11 O -0.969 6.969 12 O -0.973 6.973 13 N -0.869 5.869 14 C -0.024 4.024 15 C 0.218 3.782 16 O -0.516 6.516 17 N -0.199 5.199 18 C -0.467 4.467 19 H 0.099 0.901 20 C -0.209 4.209 21 N -0.554 5.554 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.051 4.051 27 H 0.199 0.801 28 H 0.200 0.800 29 H 0.189 0.811 30 H 0.208 0.792 31 H 0.258 0.742 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.079 -1.726 24.256 25.066 hybrid contribution 1.271 -0.664 -1.264 1.911 sum -4.808 -2.390 22.993 23.611 Atomic orbital electron populations 1.81334 1.13294 1.10115 1.08225 1.25586 0.92405 0.92620 0.92881 1.15991 0.83877 1.09331 0.95616 1.21507 0.92942 0.91254 0.97756 1.21454 0.94558 1.02395 0.97890 1.18224 0.77269 0.98737 0.94969 1.91572 1.28906 1.93060 1.97232 1.18927 0.94008 1.09277 0.92599 1.29484 1.12312 1.22607 1.05619 1.05001 0.73283 0.77864 0.73203 1.93572 1.47781 1.75994 1.79527 1.93570 1.63801 1.68588 1.71325 1.55258 1.28501 1.71001 1.32120 1.21125 0.96584 0.98805 0.85880 1.20691 0.87733 0.83569 0.86252 1.90493 1.29303 1.46367 1.85466 1.41850 1.25086 1.44162 1.08816 1.19639 1.08009 1.30449 0.88597 0.90145 1.25999 0.97487 0.95368 1.02000 1.69643 1.22882 1.31323 1.31571 0.85022 0.78185 0.78407 0.76957 1.19572 1.19547 1.19984 1.21306 0.91829 0.92912 0.99034 0.80146 0.80016 0.81089 0.79232 0.74200 0.84986 0.86970 0.76348 0.91129 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.68 18.54 19.00 0.35 -9.33 16 2 C 0.28 4.28 15.33 88.33 1.35 5.63 16 3 C -0.04 -0.47 5.73 -21.33 -0.12 -0.59 16 4 C -0.01 -0.08 9.75 22.53 0.22 0.14 16 5 C -0.14 -1.03 10.01 22.27 0.22 -0.81 16 6 C 0.13 1.74 7.25 22.46 0.16 1.90 16 7 F -0.13 -2.22 16.46 44.97 0.74 -1.48 16 8 C -0.14 -1.96 5.14 -19.86 -0.10 -2.07 16 9 C -0.57 -7.43 6.01 71.23 0.43 -7.01 16 10 S 2.61 63.31 5.44 -56.49 -0.31 63.01 16 11 O -0.98 -29.02 17.50 -127.65 -2.23 -31.25 16 12 O -0.98 -30.27 18.08 -127.65 -2.31 -32.58 16 13 N -1.11 -31.15 5.82 -190.77 -1.11 -32.26 16 14 C 0.11 3.03 6.61 85.63 0.57 3.60 16 15 C 0.43 18.76 7.85 87.66 0.69 19.45 16 16 O -0.63 -32.57 15.30 -3.07 -0.05 -32.62 16 17 N -0.56 -26.66 5.29 -306.99 -1.62 -28.29 16 18 C -0.34 -18.20 9.68 84.04 0.81 -17.38 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 21 N -0.91 -46.80 13.05 21.66 0.28 -46.52 16 22 Si 0.99 41.27 29.55 68.60 2.03 43.29 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C -0.03 -0.34 9.40 22.53 0.21 -0.13 16 27 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 28 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 29 H 0.17 1.68 7.63 -2.39 -0.02 1.67 16 30 H 0.19 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.42 13.42 7.66 -96.75 -0.74 12.67 16 32 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.11 2.90 7.70 -2.38 -0.02 2.88 16 34 H 0.40 17.57 7.90 -92.71 -0.73 16.84 16 35 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -80.27 351.37 0.39 -79.87 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.29 Total: 25.34 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.91 Total: 2.81 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -2.10 Total: -116.40 kcal Atomic # 8 Polarization: -91.86 SS G_CDS: -4.59 Total: -96.45 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.74 Total: -1.48 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 63.31 SS G_CDS: -0.31 Total: 63.01 kcal Total: -80.27 0.39 -79.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352509284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.472 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds