Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48502 * 109.46996 * 239.99429 * 3 2 1 5 5 H 1.48493 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47278 * 119.99578 * 3 2 1 7 7 C 1.39945 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 197.86650 * 7 2 1 9 9 C 1.41397 * 120.00029 * 17.87342 * 7 2 1 10 10 C 1.40712 * 120.24355 * 204.38778 * 9 7 2 11 11 C 1.37619 * 119.74704 * 179.97438 * 10 9 7 12 12 C 1.38641 * 120.24640 * 359.97438 * 11 10 9 13 13 S 1.76195 * 119.74733 * 179.97438 * 12 11 10 14 14 O 1.42096 * 106.40455 * 336.46128 * 13 12 11 15 15 O 1.42110 * 106.40127 * 203.54168 * 13 12 11 16 16 N 1.65599 * 107.21667 * 90.00619 * 13 12 11 17 17 C 1.47025 * 125.64889 * 89.97550 * 16 13 12 18 18 C 1.54325 * 107.27009 * 178.98558 * 17 16 13 19 19 C 1.55157 * 102.93991 * 337.80432 * 18 17 16 20 20 O 1.42894 * 111.00485 * 277.38672 * 19 18 17 21 21 C 1.50709 * 111.00110 * 153.57767 * 19 18 17 22 22 O 1.20822 * 119.99648 * 266.45071 * 21 19 18 23 23 O 1.34228 * 119.99724 * 86.45170 * 21 19 18 24 24 C 1.47429 * 125.64789 * 270.02205 * 16 13 12 25 25 C 1.38635 * 120.50062 * 0.28184 * 12 11 10 26 26 C 1.37621 * 120.24570 * 359.44020 * 25 12 11 27 27 H 0.96991 * 120.00294 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.13256 * 359.95820 * 10 9 7 29 29 H 1.07999 * 119.87887 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.88217 * 59.56825 * 17 16 13 31 31 H 1.09003 * 110.00853 * 298.47168 * 17 16 13 32 32 H 1.08999 * 110.72011 * 219.44377 * 18 17 16 33 33 H 1.09002 * 110.72068 * 96.16648 * 18 17 16 34 34 H 0.96698 * 114.00721 * 295.42298 * 20 19 18 35 35 H 0.96701 * 116.99376 * 179.97438 * 23 21 19 36 36 H 1.08999 * 110.35939 * 85.24603 * 24 16 13 37 37 H 1.08998 * 110.36575 * 322.92537 * 24 16 13 38 38 H 1.07999 * 119.87470 * 179.70372 * 25 12 11 39 39 H 1.08000 * 120.12756 * 180.27668 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 1.8257 -3.6498 0.0850 11 6 1.1793 -4.8066 -0.2861 12 6 0.0652 -4.7507 -1.1094 13 16 -0.7519 -6.2401 -1.5770 14 8 0.2089 -7.2800 -1.4560 15 8 -1.4420 -5.9564 -2.7865 16 7 -1.9133 -6.5411 -0.4356 17 6 -3.3032 -6.0639 -0.4808 18 6 -4.0160 -6.6094 0.7746 19 6 -3.1429 -7.8306 1.1667 20 8 -3.4990 -8.9824 0.3995 21 6 -3.2450 -8.1159 2.6430 22 8 -2.4363 -7.6443 3.4068 23 8 -4.2345 -8.8939 3.1093 24 6 -1.7245 -7.3313 0.7946 25 6 -0.4070 -3.5324 -1.5726 26 6 0.2203 -2.3624 -1.2096 27 1 -0.4850 0.8399 -0.0004 28 1 2.6934 -3.6957 0.7266 29 1 1.5407 -5.7616 0.0659 30 1 -3.7948 -6.4386 -1.3785 31 1 -3.3237 -4.9740 -0.4745 32 1 -5.0322 -6.9228 0.5355 33 1 -4.0180 -5.8652 1.5710 34 1 -4.3971 -9.3015 0.5627 35 1 -4.2586 -9.0486 4.0635 36 1 -1.3222 -6.7041 1.5902 37 1 -1.0625 -8.1762 0.6049 38 1 -1.2728 -3.5009 -2.2174 39 1 -0.1518 -1.4140 -1.5679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386481061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -190.215281 kcal Electronic energy + Delta-G solvation = -27791.572281 eV Core-core repulsion = 23597.896594 eV Total energy + Delta-G solvation = -4193.675687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00161 -38.65058 -37.57667 -36.59193 -36.52865 -35.54352 -35.14933 -34.05254 -30.56163 -30.26130 -29.47674 -29.17048 -25.82799 -24.57227 -22.39855 -21.48646 -21.13114 -20.84028 -18.97529 -18.59574 -17.98539 -17.64162 -17.40696 -16.61757 -15.87113 -15.61174 -15.54229 -15.30134 -14.72331 -14.56431 -14.14858 -13.80735 -13.59504 -13.28083 -13.19269 -13.04400 -12.42508 -12.41571 -12.19062 -11.97868 -11.92601 -11.79713 -11.64126 -11.47002 -11.41044 -11.32303 -11.29280 -11.23148 -11.07794 -10.90591 -10.44227 -10.27393 -9.76670 -9.62628 -9.51007 -8.72218 -7.96885 -7.70941 -7.15814 -4.81194 1.09548 1.75220 2.24867 2.52147 2.87282 2.88841 2.91966 2.94436 3.57946 3.65433 3.72849 3.98942 4.17744 4.28005 4.54019 4.74273 4.96661 5.07957 5.17134 5.36656 5.41786 5.52233 5.72755 5.73023 5.87066 6.06530 6.09432 6.10252 6.19343 6.47818 6.67281 6.73377 6.95469 7.04324 7.14411 7.33110 7.42076 7.49756 7.62423 7.76051 7.95856 8.30635 8.50156 8.64197 9.75509 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003264 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.148808 B = 8576.719135 C = 9325.929990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.237 4.237 11 C 0.002 3.998 12 C -0.788 4.788 13 S 2.708 3.292 14 O -0.977 6.977 15 O -0.975 6.975 16 N -1.012 6.012 17 C 0.128 3.872 18 C -0.145 4.145 19 C 0.135 3.865 20 O -0.525 6.525 21 C 0.467 3.533 22 O -0.495 6.495 23 O -0.515 6.515 24 C 0.143 3.857 25 C -0.016 4.016 26 C -0.182 4.182 27 H 0.290 0.710 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.387 0.613 35 H 0.413 0.587 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 -9.269 4.933 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.258 4.258 11 C -0.018 4.018 12 C -0.884 4.884 13 S 2.809 3.191 14 O -0.968 6.968 15 O -0.966 6.966 16 N -0.847 5.847 17 C 0.003 3.997 18 C -0.184 4.184 19 C 0.090 3.910 20 O -0.331 6.331 21 C 0.307 3.693 22 O -0.381 6.381 23 O -0.328 6.328 24 C 0.017 3.983 25 C -0.036 4.036 26 C -0.203 4.203 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.273 0.727 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.834 -9.397 3.695 14.095 hybrid contribution -0.220 1.241 1.528 1.981 sum -10.053 -8.156 5.223 13.959 Atomic orbital electron populations 1.69804 1.07930 1.30479 1.30557 1.26135 0.94902 1.02138 0.91796 0.86185 0.80180 0.79066 0.80464 1.18330 1.19890 1.18541 1.19933 0.98507 0.91192 1.36521 0.89420 1.17852 0.90048 0.92129 0.86382 1.21054 1.04446 0.92665 1.07644 1.20177 0.92165 0.97334 0.92161 1.29205 1.16253 1.15907 1.27057 1.00925 0.71738 0.74371 0.72032 1.93479 1.60184 1.56678 1.86437 1.93481 1.74548 1.86502 1.42067 1.58895 1.22972 1.65631 1.37201 1.21561 0.81097 0.99600 0.97488 1.23338 0.99334 0.96283 0.99479 1.22171 0.98966 0.87788 0.82080 1.86677 1.37199 1.44154 1.65072 1.24041 0.77876 0.74917 0.92461 1.90783 1.40381 1.48254 1.58721 1.84477 1.50887 1.64846 1.32604 1.21821 0.92322 0.95942 0.88179 1.20248 0.96766 0.91645 0.94941 1.21331 1.00080 0.96816 1.02060 0.89924 0.88133 0.87753 0.90517 0.90513 0.88477 0.88902 0.76405 0.72733 0.88177 0.88357 0.87890 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.02 10.95 55.55 0.61 -17.41 16 2 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 3 Si 0.92 16.95 29.59 -169.99 -5.03 11.92 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.43 -10.65 9.05 -37.74 -0.34 -10.99 16 8 H 0.09 2.03 7.91 -52.49 -0.41 1.62 16 9 C 0.14 3.55 5.58 -106.83 -0.60 2.95 16 10 C -0.24 -5.66 9.80 -38.87 -0.38 -6.04 16 11 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 12 C -0.79 -17.58 6.00 -39.29 -0.24 -17.82 16 13 S 2.71 54.01 5.93 -107.50 -0.64 53.37 16 14 O -0.98 -21.23 16.58 -57.17 -0.95 -22.18 16 15 O -0.98 -21.05 16.83 -57.17 -0.96 -22.01 16 16 N -1.01 -16.35 3.70 -111.42 -0.41 -16.77 16 17 C 0.13 1.66 6.99 -3.06 -0.02 1.64 16 18 C -0.15 -1.41 6.14 -24.90 -0.15 -1.57 16 19 C 0.13 1.52 1.27 -89.62 -0.11 1.40 16 20 O -0.52 -5.50 13.13 -46.12 -0.61 -6.11 16 21 C 0.47 4.99 7.35 36.01 0.26 5.25 16 22 O -0.50 -6.90 16.50 -18.75 -0.31 -7.21 16 23 O -0.52 -3.57 13.00 -43.73 -0.57 -4.14 16 24 C 0.14 2.10 6.13 -2.53 -0.02 2.08 16 25 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 26 C -0.18 -4.56 8.70 -38.87 -0.34 -4.89 16 27 H 0.29 6.11 8.30 -40.82 -0.34 5.78 16 28 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.10 2.14 7.60 -52.49 -0.40 1.75 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.39 2.31 8.77 45.56 0.40 2.71 16 35 H 0.41 1.24 9.10 45.56 0.41 1.65 16 36 H 0.10 1.48 7.21 -51.93 -0.37 1.11 16 37 H 0.10 1.48 7.78 -51.93 -0.40 1.07 16 38 H 0.10 2.20 7.59 -52.49 -0.40 1.80 16 39 H 0.12 3.08 6.15 -52.49 -0.32 2.75 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -33.11 349.60 -9.11 -42.22 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -2.74 Total: 10.51 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.77 Total: -27.48 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.20 Total: -34.17 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -3.39 Total: -61.64 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 54.01 SS G_CDS: -0.64 Total: 53.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.11 -9.11 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386481061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.990 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds