Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48502 * 109.46996 * 239.99429 * 3 2 1 5 5 H 1.48493 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47278 * 119.99578 * 3 2 1 7 7 C 1.39945 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 197.86650 * 7 2 1 9 9 C 1.41397 * 120.00029 * 17.87342 * 7 2 1 10 10 C 1.40712 * 120.24355 * 204.38778 * 9 7 2 11 11 C 1.37619 * 119.74704 * 179.97438 * 10 9 7 12 12 C 1.38641 * 120.24640 * 359.97438 * 11 10 9 13 13 S 1.76195 * 119.74733 * 179.97438 * 12 11 10 14 14 O 1.42096 * 106.40455 * 336.46128 * 13 12 11 15 15 O 1.42110 * 106.40127 * 203.54168 * 13 12 11 16 16 N 1.65599 * 107.21667 * 90.00619 * 13 12 11 17 17 C 1.47025 * 125.64889 * 89.97550 * 16 13 12 18 18 C 1.54325 * 107.27009 * 178.98558 * 17 16 13 19 19 C 1.55157 * 102.93991 * 337.80432 * 18 17 16 20 20 O 1.42894 * 111.00485 * 277.38672 * 19 18 17 21 21 C 1.50709 * 111.00110 * 153.57767 * 19 18 17 22 22 O 1.20822 * 119.99648 * 266.45071 * 21 19 18 23 23 O 1.34228 * 119.99724 * 86.45170 * 21 19 18 24 24 C 1.47429 * 125.64789 * 270.02205 * 16 13 12 25 25 C 1.38635 * 120.50062 * 0.28184 * 12 11 10 26 26 C 1.37621 * 120.24570 * 359.44020 * 25 12 11 27 27 H 0.96991 * 120.00294 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.13256 * 359.95820 * 10 9 7 29 29 H 1.07999 * 119.87887 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.88217 * 59.56825 * 17 16 13 31 31 H 1.09003 * 110.00853 * 298.47168 * 17 16 13 32 32 H 1.08999 * 110.72011 * 219.44377 * 18 17 16 33 33 H 1.09002 * 110.72068 * 96.16648 * 18 17 16 34 34 H 0.96698 * 114.00721 * 295.42298 * 20 19 18 35 35 H 0.96701 * 116.99376 * 179.97438 * 23 21 19 36 36 H 1.08999 * 110.35939 * 85.24603 * 24 16 13 37 37 H 1.08998 * 110.36575 * 322.92537 * 24 16 13 38 38 H 1.07999 * 119.87470 * 179.70372 * 25 12 11 39 39 H 1.08000 * 120.12756 * 180.27668 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 1.8257 -3.6498 0.0850 11 6 1.1793 -4.8066 -0.2861 12 6 0.0652 -4.7507 -1.1094 13 16 -0.7519 -6.2401 -1.5770 14 8 0.2089 -7.2800 -1.4560 15 8 -1.4420 -5.9564 -2.7865 16 7 -1.9133 -6.5411 -0.4356 17 6 -3.3032 -6.0639 -0.4808 18 6 -4.0160 -6.6094 0.7746 19 6 -3.1429 -7.8306 1.1667 20 8 -3.4990 -8.9824 0.3995 21 6 -3.2450 -8.1159 2.6430 22 8 -2.4363 -7.6443 3.4068 23 8 -4.2345 -8.8939 3.1093 24 6 -1.7245 -7.3313 0.7946 25 6 -0.4070 -3.5324 -1.5726 26 6 0.2203 -2.3624 -1.2096 27 1 -0.4850 0.8399 -0.0004 28 1 2.6934 -3.6957 0.7266 29 1 1.5407 -5.7616 0.0659 30 1 -3.7948 -6.4386 -1.3785 31 1 -3.3237 -4.9740 -0.4745 32 1 -5.0322 -6.9228 0.5355 33 1 -4.0180 -5.8652 1.5710 34 1 -4.3971 -9.3015 0.5627 35 1 -4.2586 -9.0486 4.0635 36 1 -1.3222 -6.7041 1.5902 37 1 -1.0625 -8.1762 0.6049 38 1 -1.2728 -3.5009 -2.2174 39 1 -0.1518 -1.4140 -1.5679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386481061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -216.646059 kcal Electronic energy + Delta-G solvation = -27792.718406 eV Core-core repulsion = 23597.896594 eV Total energy + Delta-G solvation = -4194.821811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84775 -39.56706 -39.40020 -38.22248 -37.35670 -36.85072 -36.46698 -35.82388 -32.09108 -31.56704 -31.31496 -30.18260 -27.63908 -25.53815 -23.47709 -23.26575 -22.91693 -21.71300 -20.15158 -19.63686 -19.44469 -18.92560 -18.78279 -18.22300 -17.24942 -16.84002 -16.68288 -16.39446 -15.89186 -15.85915 -15.54402 -15.29271 -14.97118 -14.78132 -14.49800 -14.12427 -14.00575 -13.96723 -13.62314 -13.45271 -13.21606 -13.10588 -12.94546 -12.91254 -12.83421 -12.71252 -12.61730 -12.58394 -12.44804 -12.03319 -12.00104 -11.57457 -11.37165 -11.23179 -11.10382 -10.02470 -9.80146 -9.57618 -8.88779 -6.66707 -0.47721 0.46154 0.93314 1.03754 1.35475 1.43852 1.49607 1.72725 2.10881 2.18177 2.50778 2.85149 2.93122 3.07064 3.26325 3.51304 3.56130 4.03878 4.14391 4.27007 4.28281 4.29283 4.41013 4.63904 4.66165 4.72302 4.84448 4.91153 4.92312 5.05452 5.05979 5.21651 5.36343 5.46815 5.50939 5.57503 5.75077 5.91273 6.13222 6.46603 6.60055 6.66141 6.78821 6.86405 8.06241 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003264 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.148808 B = 8576.719135 C = 9325.929990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.257 4.257 11 C -0.004 4.004 12 C -0.799 4.799 13 S 2.738 3.262 14 O -0.996 6.996 15 O -0.991 6.991 16 N -1.011 6.011 17 C 0.112 3.888 18 C -0.133 4.133 19 C 0.142 3.858 20 O -0.535 6.535 21 C 0.479 3.521 22 O -0.534 6.534 23 O -0.497 6.497 24 C 0.130 3.870 25 C -0.019 4.019 26 C -0.206 4.206 27 H 0.300 0.700 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.434 0.566 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 -9.702 5.600 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.277 4.277 11 C -0.023 4.023 12 C -0.893 4.893 13 S 2.837 3.163 14 O -0.986 6.986 15 O -0.982 6.982 16 N -0.849 5.849 17 C -0.012 4.012 18 C -0.171 4.171 19 C 0.097 3.903 20 O -0.345 6.345 21 C 0.321 3.679 22 O -0.424 6.424 23 O -0.312 6.312 24 C 0.005 3.995 25 C -0.039 4.039 26 C -0.226 4.226 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.261 0.739 35 H 0.297 0.703 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.571 -9.837 4.378 15.806 hybrid contribution 0.171 1.194 1.346 1.808 sum -11.400 -8.643 5.724 15.409 Atomic orbital electron populations 1.69828 1.09311 1.32007 1.30396 1.27000 0.95614 1.05117 0.90690 0.85091 0.78830 0.74578 0.80416 1.18310 1.18600 1.17896 1.20233 0.98983 0.92134 1.37832 0.89036 1.18200 0.90724 0.93196 0.87107 1.21274 1.05223 0.92827 1.08378 1.20442 0.92126 0.97781 0.91991 1.29673 1.16561 1.16979 1.26081 0.99920 0.71489 0.73035 0.71859 1.93448 1.61583 1.56729 1.86887 1.93453 1.74747 1.86519 1.43447 1.58484 1.23568 1.65659 1.37164 1.21927 0.79527 0.99866 0.99911 1.23368 1.00586 0.95425 0.97770 1.21833 0.96982 0.88755 0.82764 1.86646 1.39160 1.43761 1.64902 1.23773 0.77780 0.74528 0.91867 1.90786 1.42032 1.50014 1.59539 1.84415 1.48949 1.63262 1.34524 1.21928 0.95006 0.95489 0.87126 1.20453 0.96984 0.91619 0.94851 1.21359 1.00944 0.97105 1.03196 0.88912 0.87107 0.86011 0.89458 0.90715 0.84412 0.88462 0.73926 0.70335 0.88922 0.89268 0.86453 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.87 10.95 21.83 0.24 -37.63 16 2 C 0.04 1.65 5.14 85.26 0.44 2.09 16 3 Si 0.99 34.47 29.59 68.60 2.03 36.50 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.47 -23.44 9.05 23.46 0.21 -23.23 16 8 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 9 C 0.11 5.86 5.58 -21.29 -0.12 5.74 16 10 C -0.26 -12.63 9.80 22.73 0.22 -12.40 16 11 C 0.00 -0.16 9.49 22.22 0.21 0.05 16 12 C -0.80 -36.21 6.00 22.46 0.13 -36.08 16 13 S 2.74 108.77 5.93 -56.49 -0.34 108.44 16 14 O -1.00 -43.18 16.58 -128.00 -2.12 -45.30 16 15 O -0.99 -42.30 16.83 -128.00 -2.15 -44.45 16 16 N -1.01 -31.89 3.70 -506.42 -1.87 -33.76 16 17 C 0.11 2.71 6.99 86.73 0.61 3.32 16 18 C -0.13 -2.18 6.14 31.78 0.20 -1.98 16 19 C 0.14 2.87 1.27 -10.15 -0.01 2.85 16 20 O -0.53 -9.63 13.13 -138.57 -1.82 -11.45 16 21 C 0.48 9.12 7.35 71.24 0.52 9.65 16 22 O -0.53 -14.29 16.50 21.97 0.36 -13.93 16 23 O -0.50 -5.13 13.00 -47.12 -0.61 -5.75 16 24 C 0.13 3.73 6.13 86.85 0.53 4.26 16 25 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 26 C -0.21 -10.65 8.70 22.73 0.20 -10.45 16 27 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 28 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 29 H 0.12 5.07 7.60 -2.91 -0.02 5.05 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 34 H 0.41 3.24 8.77 -74.06 -0.65 2.59 16 35 H 0.43 1.09 9.10 -74.06 -0.67 0.41 16 36 H 0.09 2.77 7.21 -2.39 -0.02 2.75 16 37 H 0.09 2.68 7.78 -2.39 -0.02 2.66 16 38 H 0.12 5.08 7.59 -2.91 -0.02 5.06 16 39 H 0.11 5.94 6.15 -2.91 -0.02 5.92 16 Total: -1.00 -72.88 349.60 -3.13 -76.00 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.19 Total: 28.22 kcal Atomic # 6 Polarization: -60.24 SS G_CDS: 3.35 Total: -56.88 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.63 Total: -71.39 kcal Atomic # 8 Polarization: -114.53 SS G_CDS: -6.35 Total: -120.88 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 108.77 SS G_CDS: -0.34 Total: 108.44 kcal Total: -72.88 -3.13 -76.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386481061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.644 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds