Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48493 * 109.47226 * 270.00476 * 3 2 1 5 5 H 1.48505 * 109.46896 * 30.00648 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00225 * 3 2 1 7 7 C 1.38807 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00073 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99475 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00274 * 357.71329 * 11 10 9 13 13 N 1.34778 * 119.99738 * 177.70699 * 11 10 9 14 14 C 1.46501 * 120.00059 * 184.96471 * 13 11 10 15 15 C 1.50699 * 109.47323 * 279.05601 * 14 13 11 16 16 C 1.38236 * 120.00550 * 97.39774 * 15 14 13 17 17 C 1.38215 * 120.01269 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.02716 * 0.05061 * 17 16 15 19 19 C 1.38191 * 120.01646 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.00809 * 277.13313 * 15 14 13 21 21 Cl 1.73598 * 120.01042 * 359.97184 * 20 15 14 22 22 C 1.46500 * 120.00043 * 4.96661 * 13 11 10 23 23 C 1.53369 * 114.56667 * 300.86153 * 22 13 11 24 24 O 1.43350 * 88.49747 * 220.44862 * 23 22 13 25 25 C 1.43352 * 88.32267 * 28.12581 * 24 23 22 26 26 H 0.96995 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47110 * 60.00166 * 10 9 7 28 28 H 1.09001 * 109.47409 * 299.99848 * 10 9 7 29 29 H 1.09002 * 109.46621 * 39.05728 * 14 13 11 30 30 H 1.08994 * 109.47396 * 159.05212 * 14 13 11 31 31 H 1.07997 * 119.99402 * 0.02562 * 16 15 14 32 32 H 1.08003 * 119.99047 * 180.02562 * 17 16 15 33 33 H 1.08009 * 119.99528 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.01354 * 180.02562 * 19 18 17 35 35 H 1.08994 * 113.56757 * 75.13671 * 22 13 11 36 36 H 1.08994 * 113.39467 * 105.52321 * 23 22 13 37 37 H 1.09001 * 113.38814 * 335.36644 * 23 22 13 38 38 H 1.08998 * 113.39116 * 86.75009 * 25 24 23 39 39 H 1.08996 * 113.39193 * 216.90782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3028 -0.0017 12 8 0.7918 -5.5026 0.0414 13 7 2.8430 -6.3428 -0.0494 14 6 2.3287 -7.7102 -0.1588 15 6 1.9032 -8.1974 1.2023 16 6 0.5741 -8.1300 1.5763 17 6 0.1837 -8.5772 2.8244 18 6 1.1221 -9.0912 3.7000 19 6 2.4512 -9.1586 3.3276 20 6 2.8417 -8.7171 2.0756 21 17 4.5098 -8.8090 1.6037 22 6 4.2876 -6.1060 0.0081 23 6 4.8331 -5.2158 -1.1153 24 8 5.9691 -6.0858 -1.2018 25 6 5.1360 -7.1517 -0.7279 26 1 -0.4849 0.8400 0.0004 27 1 3.1251 -3.7318 0.8875 28 1 3.1237 -3.7310 -0.8925 29 1 1.4727 -7.7235 -0.8335 30 1 3.1098 -8.3620 -0.5502 31 1 -0.1594 -7.7286 0.8928 32 1 -0.8549 -8.5248 3.1161 33 1 0.8165 -9.4401 4.6754 34 1 3.1842 -9.5605 4.0114 35 1 4.6479 -5.8500 1.0045 36 1 5.0841 -4.2077 -0.7855 37 1 4.2136 -5.2226 -2.0122 38 1 4.5952 -7.6645 -1.5233 39 1 5.6525 -7.8402 -0.0593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425652762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = -11.001562 kcal Electronic energy + Delta-G solvation = -25149.384060 eV Core-core repulsion = 21404.188828 eV Total energy + Delta-G solvation = -3745.195232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34995 -39.68876 -38.68435 -36.69370 -35.18442 -32.45226 -32.34151 -30.86134 -29.56268 -28.74754 -26.52340 -25.82756 -25.41284 -22.89121 -21.89633 -21.55750 -19.29427 -17.98274 -17.35630 -17.01599 -16.72774 -16.58395 -15.69831 -15.49593 -15.42317 -14.94296 -14.82365 -14.27560 -13.99418 -13.92118 -13.68287 -13.36524 -13.06601 -12.89377 -12.64741 -12.44130 -12.02110 -11.94334 -11.75278 -11.64937 -11.41449 -11.11793 -11.07986 -11.03820 -10.78658 -10.73421 -10.06798 -9.83943 -9.59020 -9.08730 -9.01501 -8.89789 -8.66996 -8.27062 -6.53206 -6.24283 -3.95004 0.94459 1.11698 1.87509 2.78491 2.93169 3.21018 3.22865 3.28589 3.46469 3.62555 3.71202 3.83663 4.18121 4.48710 4.53278 4.70800 4.74158 4.86591 5.02344 5.03946 5.11054 5.12007 5.16072 5.32497 5.36999 5.39673 5.54147 5.61391 5.65396 5.70625 5.78021 5.78471 5.88735 6.03412 6.08182 6.24072 6.32586 6.40713 6.65968 7.37385 7.57428 8.32704 8.43668 9.21479 10.83116 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003600 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.081707 B = 7775.634035 C = 9126.800270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.538 3.462 12 O -0.505 6.505 13 N -0.607 5.607 14 C 0.154 3.846 15 C -0.096 4.096 16 C -0.072 4.072 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.025 4.025 21 Cl -0.073 7.073 22 C 0.079 3.921 23 C 0.019 3.981 24 O -0.362 6.362 25 C 0.031 3.969 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 -20.753 3.257 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.744 3.256 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.306 4.306 11 C 0.326 3.674 12 O -0.378 6.378 13 N -0.345 5.345 14 C 0.032 3.968 15 C -0.099 4.099 16 C -0.091 4.091 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.052 4.052 21 Cl -0.044 7.044 22 C -0.025 4.025 23 C -0.059 4.059 24 O -0.279 6.279 25 C -0.046 4.046 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.909 -20.901 3.130 21.944 hybrid contribution 2.057 1.304 0.214 2.445 sum 7.966 -19.596 3.344 21.416 Atomic orbital electron populations 1.70011 1.05950 1.27474 1.46839 1.24975 0.95004 0.98989 0.94468 0.86187 0.79464 0.81601 0.78395 1.20233 1.20746 1.19661 1.22850 0.94882 0.91590 1.59030 0.90943 1.85359 1.04796 0.96326 1.96704 1.23705 1.06706 0.95296 1.04863 1.20301 0.86113 0.86076 0.74860 1.90670 1.15021 1.85203 1.46950 1.47938 1.05334 1.05544 1.75676 1.20344 1.00557 0.82861 0.93049 1.20102 0.93112 0.99403 0.97239 1.21255 0.95038 0.96044 0.96782 1.21322 1.00175 0.98140 0.93908 1.21136 0.92332 0.99197 0.99809 1.20990 0.96869 1.01171 0.94684 1.20872 0.84975 1.03650 0.95695 1.98338 1.17514 1.96942 1.91636 1.24049 0.80847 0.97463 1.00183 1.24322 0.86799 0.96744 0.97992 1.89938 1.27006 1.22157 1.88814 1.24144 0.91340 0.92083 0.97052 0.92177 0.89317 0.89003 0.88822 0.89146 0.84128 0.85274 0.85261 0.85162 0.86853 0.88113 0.89174 0.89522 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 2 C 0.08 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 10 C -0.16 -3.04 4.57 36.01 0.16 -2.88 16 11 C 0.54 9.60 7.48 -10.98 -0.08 9.52 16 12 O -0.51 -10.46 14.42 5.56 0.08 -10.38 16 13 N -0.61 -8.20 2.77 -168.46 -0.47 -8.67 16 14 C 0.15 1.79 4.80 -5.19 -0.02 1.76 16 15 C -0.10 -1.16 5.31 -104.59 -0.56 -1.71 16 16 C -0.07 -0.89 9.01 -39.59 -0.36 -1.25 16 17 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 18 C -0.11 -1.00 10.04 -39.59 -0.40 -1.40 16 19 C -0.12 -1.17 9.83 -39.55 -0.39 -1.56 16 20 C -0.03 -0.27 6.31 -39.50 -0.25 -0.52 16 21 Cl -0.07 -0.70 22.77 -51.86 -1.18 -1.89 16 22 C 0.08 0.93 3.36 -67.50 -0.23 0.71 16 23 C 0.02 0.23 6.10 24.60 0.15 0.38 16 24 O -0.36 -4.60 12.74 -35.23 -0.45 -5.05 16 25 C 0.03 0.32 6.28 24.65 0.15 0.47 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.09 1.67 8.10 -51.92 -0.42 1.24 16 28 H 0.09 1.65 5.71 -51.92 -0.30 1.35 16 29 H 0.09 1.11 7.67 -51.93 -0.40 0.71 16 30 H 0.09 0.84 5.05 -51.93 -0.26 0.58 16 31 H 0.14 1.84 7.55 -52.49 -0.40 1.45 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.10 1.23 7.54 -51.93 -0.39 0.84 16 37 H 0.09 1.09 7.99 -51.93 -0.41 0.67 16 38 H 0.09 0.79 7.01 -51.93 -0.36 0.43 16 39 H 0.09 0.85 5.60 -51.93 -0.29 0.56 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -32.84 346.17 -9.78 -42.62 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.47 Total: 1.53 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.01 Total: -10.76 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.27 Total: -33.71 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.37 Total: -15.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.18 Total: -1.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.84 -9.78 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425652762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.619 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds