Wall clock time and date at job start Sat Apr 11 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48493 * 109.47226 * 270.00476 * 3 2 1 5 5 H 1.48505 * 109.46896 * 30.00648 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00225 * 3 2 1 7 7 C 1.38807 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00073 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99475 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00274 * 357.71329 * 11 10 9 13 13 N 1.34778 * 119.99738 * 177.70699 * 11 10 9 14 14 C 1.46501 * 120.00059 * 184.96471 * 13 11 10 15 15 C 1.50699 * 109.47323 * 279.05601 * 14 13 11 16 16 C 1.38236 * 120.00550 * 97.39774 * 15 14 13 17 17 C 1.38215 * 120.01269 * 179.97438 * 16 15 14 18 18 C 1.38261 * 120.02716 * 0.05061 * 17 16 15 19 19 C 1.38191 * 120.01646 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.00809 * 277.13313 * 15 14 13 21 21 Cl 1.73598 * 120.01042 * 359.97184 * 20 15 14 22 22 C 1.46500 * 120.00043 * 4.96661 * 13 11 10 23 23 C 1.53369 * 114.56667 * 300.86153 * 22 13 11 24 24 O 1.43350 * 88.49747 * 220.44862 * 23 22 13 25 25 C 1.43352 * 88.32267 * 28.12581 * 24 23 22 26 26 H 0.96995 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47110 * 60.00166 * 10 9 7 28 28 H 1.09001 * 109.47409 * 299.99848 * 10 9 7 29 29 H 1.09002 * 109.46621 * 39.05728 * 14 13 11 30 30 H 1.08994 * 109.47396 * 159.05212 * 14 13 11 31 31 H 1.07997 * 119.99402 * 0.02562 * 16 15 14 32 32 H 1.08003 * 119.99047 * 180.02562 * 17 16 15 33 33 H 1.08009 * 119.99528 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.01354 * 180.02562 * 19 18 17 35 35 H 1.08994 * 113.56757 * 75.13671 * 22 13 11 36 36 H 1.08994 * 113.39467 * 105.52321 * 23 22 13 37 37 H 1.09001 * 113.38814 * 335.36644 * 23 22 13 38 38 H 1.08998 * 113.39116 * 86.75009 * 25 24 23 39 39 H 1.08996 * 113.39193 * 216.90782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3028 -0.0017 12 8 0.7918 -5.5026 0.0414 13 7 2.8430 -6.3428 -0.0494 14 6 2.3287 -7.7102 -0.1588 15 6 1.9032 -8.1974 1.2023 16 6 0.5741 -8.1300 1.5763 17 6 0.1837 -8.5772 2.8244 18 6 1.1221 -9.0912 3.7000 19 6 2.4512 -9.1586 3.3276 20 6 2.8417 -8.7171 2.0756 21 17 4.5098 -8.8090 1.6037 22 6 4.2876 -6.1060 0.0081 23 6 4.8331 -5.2158 -1.1153 24 8 5.9691 -6.0858 -1.2018 25 6 5.1360 -7.1517 -0.7279 26 1 -0.4849 0.8400 0.0004 27 1 3.1251 -3.7318 0.8875 28 1 3.1237 -3.7310 -0.8925 29 1 1.4727 -7.7235 -0.8335 30 1 3.1098 -8.3620 -0.5502 31 1 -0.1594 -7.7286 0.8928 32 1 -0.8549 -8.5248 3.1161 33 1 0.8165 -9.4401 4.6754 34 1 3.1842 -9.5605 4.0114 35 1 4.6479 -5.8500 1.0045 36 1 5.0841 -4.2077 -0.7855 37 1 4.2136 -5.2226 -2.0122 38 1 4.5952 -7.6645 -1.5233 39 1 5.6525 -7.8402 -0.0593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425652762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:00 Heat of formation + Delta-G solvation = -31.012242 kcal Electronic energy + Delta-G solvation = -25150.251788 eV Core-core repulsion = 21404.188828 eV Total energy + Delta-G solvation = -3746.062960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37598 -40.65152 -39.85775 -37.48242 -36.36726 -34.57935 -33.34835 -31.67835 -30.91169 -29.76329 -27.82814 -27.37845 -26.71347 -23.72687 -22.79973 -22.65358 -20.52158 -19.73061 -18.35792 -18.23315 -17.78781 -17.65299 -16.87570 -16.68952 -16.50148 -16.35470 -16.07116 -15.90412 -15.37267 -14.87669 -14.73454 -14.52200 -14.29211 -14.03896 -13.80508 -13.58670 -13.29704 -13.15297 -12.92970 -12.87990 -12.65840 -12.60666 -12.46485 -12.27275 -12.00596 -11.73065 -11.58857 -11.13846 -11.01921 -10.98342 -10.27203 -9.94563 -9.85389 -9.64009 -8.65397 -8.34567 -6.11673 0.10908 0.28346 1.06040 1.24976 1.41935 1.44838 1.51894 1.55369 1.99160 2.27149 2.68790 2.77077 2.88312 3.00067 3.21873 3.57359 3.65889 3.80761 3.84183 4.01774 4.09060 4.17036 4.22330 4.27900 4.38115 4.42674 4.46672 4.50317 4.56548 4.68595 4.77261 4.84111 4.85515 4.96475 5.23835 5.30267 5.40276 5.42521 5.50210 5.85328 6.11764 6.20298 7.06624 7.07572 8.74466 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003600 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.081707 B = 7775.634035 C = 9126.800270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.140 6.140 10 C -0.131 4.131 11 C 0.539 3.461 12 O -0.541 6.541 13 N -0.591 5.591 14 C 0.153 3.847 15 C -0.111 4.111 16 C -0.094 4.094 17 C -0.126 4.126 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.032 4.032 21 Cl -0.062 7.062 22 C 0.072 3.928 23 C 0.016 3.984 24 O -0.374 6.374 25 C 0.040 3.960 26 H 0.271 0.729 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.759 -21.678 4.010 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.087 5.913 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.417 6.417 13 N -0.327 5.327 14 C 0.032 3.968 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.144 4.144 18 C -0.120 4.120 19 C -0.139 4.139 20 C -0.059 4.059 21 Cl -0.033 7.033 22 C -0.031 4.031 23 C -0.061 4.061 24 O -0.292 6.292 25 C -0.037 4.037 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.309 -21.867 3.879 23.711 hybrid contribution 1.374 1.437 0.006 1.988 sum 9.683 -20.430 3.884 22.940 Atomic orbital electron populations 1.70167 1.07875 1.28562 1.48028 1.26044 0.95889 1.03068 0.93743 0.85024 0.78259 0.76353 0.78816 1.19290 1.20328 1.18342 1.23186 0.95292 0.92101 1.58832 0.90101 1.85487 1.09962 0.98838 1.96986 1.23536 1.03753 0.94702 1.06183 1.19989 0.85989 0.86244 0.75101 1.90668 1.16525 1.85567 1.48937 1.47796 1.05647 1.05394 1.73824 1.20506 1.01161 0.81790 0.93360 1.20085 0.93275 1.00434 0.97513 1.21257 0.95197 0.97297 0.97564 1.21561 1.01378 0.98000 0.93492 1.21493 0.91932 0.97953 1.00631 1.21337 0.97582 1.00424 0.94541 1.20979 0.85354 1.03585 0.95992 1.98334 1.16470 1.96884 1.91623 1.24234 0.79618 0.98661 1.00610 1.24328 0.86840 0.96839 0.98081 1.89940 1.27366 1.22912 1.88963 1.24234 0.90628 0.91480 0.97311 0.92008 0.88289 0.87186 0.89576 0.86546 0.86057 0.83992 0.82336 0.82959 0.86368 0.88188 0.89069 0.87939 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 2 C 0.02 0.99 5.49 84.86 0.47 1.45 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.55 -30.74 9.50 67.96 0.65 -30.10 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.14 -7.58 20.58 -56.49 -1.16 -8.75 16 10 C -0.13 -5.12 4.57 71.24 0.33 -4.80 16 11 C 0.54 19.34 7.48 87.66 0.66 19.99 16 12 O -0.54 -23.18 14.42 -3.01 -0.04 -23.22 16 13 N -0.59 -15.41 2.77 -807.19 -2.24 -17.65 16 14 C 0.15 3.43 4.80 85.63 0.41 3.84 16 15 C -0.11 -2.59 5.31 -19.84 -0.11 -2.69 16 16 C -0.09 -2.37 9.01 22.26 0.20 -2.16 16 17 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 18 C -0.10 -1.70 10.04 22.26 0.22 -1.48 16 19 C -0.12 -2.09 9.83 22.29 0.22 -1.87 16 20 C -0.03 -0.65 6.31 22.32 0.14 -0.50 16 21 Cl -0.06 -1.04 22.77 -2.72 -0.06 -1.10 16 22 C 0.07 1.58 3.36 45.27 0.15 1.73 16 23 C 0.02 0.37 6.10 63.85 0.39 0.76 16 24 O -0.37 -8.67 12.74 -148.98 -1.90 -10.57 16 25 C 0.04 0.72 6.28 63.88 0.40 1.12 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.10 3.66 8.10 -2.39 -0.02 3.64 16 28 H 0.11 3.88 5.71 -2.39 -0.01 3.87 16 29 H 0.09 2.07 7.67 -2.39 -0.02 2.06 16 30 H 0.12 1.94 5.05 -2.39 -0.01 1.93 16 31 H 0.12 3.43 7.55 -2.91 -0.02 3.41 16 32 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.10 2.28 7.54 -2.39 -0.02 2.27 16 37 H 0.09 2.06 7.99 -2.39 -0.02 2.04 16 38 H 0.10 1.55 7.01 -2.39 -0.02 1.54 16 39 H 0.10 1.61 5.60 -2.39 -0.01 1.60 16 Total: -1.00 -72.36 346.17 2.35 -70.02 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.08 Total: 17.94 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.35 Total: -17.08 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.95 Total: -72.55 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.94 Total: -33.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.75 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.06 Total: -1.10 kcal Total: -72.36 2.35 -70.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425652762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.005 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds