Wall clock time and date at job start Sat Apr 11 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47329 * 43.63326 * 3 2 1 5 5 C 1.36938 * 120.00032 * 273.31607 * 4 3 2 6 6 H 1.07993 * 120.00397 * 186.45115 * 5 4 3 7 7 C 1.38817 * 119.99636 * 6.44696 * 5 4 3 8 8 N 1.31616 * 120.00267 * 24.45658 * 7 5 4 9 9 Si 1.86797 * 119.99771 * 204.46100 * 7 5 4 10 10 H 1.48501 * 109.47509 * 85.09277 * 9 7 5 11 11 H 1.48499 * 109.47280 * 205.09399 * 9 7 5 12 12 H 1.48504 * 109.47218 * 325.09088 * 9 7 5 13 13 S 1.65596 * 120.00222 * 93.31504 * 4 3 2 14 14 O 1.42103 * 106.40241 * 23.53977 * 13 4 3 15 15 O 1.42096 * 106.40460 * 156.46222 * 13 4 3 16 16 C 1.76209 * 107.21804 * 270.00267 * 13 4 3 17 17 C 1.37836 * 119.93871 * 114.72776 * 16 13 4 18 18 C 1.39688 * 119.87117 * 179.73270 * 17 16 13 19 19 C 1.47602 * 120.12177 * 180.26592 * 18 17 16 20 20 O 1.21487 * 119.99800 * 0.27085 * 19 18 17 21 21 O 1.34725 * 119.99992 * 180.27462 * 19 18 17 22 22 C 1.45199 * 116.99883 * 180.02562 * 21 19 18 23 23 C 1.39719 * 119.75431 * 0.53726 * 18 17 16 24 24 C 1.37797 * 119.87540 * 359.73177 * 23 18 17 25 25 C 1.38641 * 119.93324 * 295.00029 * 16 13 4 26 26 F 1.35100 * 119.87978 * 0.02562 * 25 16 13 27 27 H 4.40638 * 5.51462 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47168 * 283.63200 * 3 2 1 29 29 H 1.09003 * 109.47119 * 163.62867 * 3 2 1 30 30 H 0.96996 * 120.00200 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.06518 * 359.97001 * 17 16 13 32 32 H 1.08999 * 109.46804 * 299.98784 * 22 21 19 33 33 H 1.08991 * 109.47804 * 59.99662 * 22 21 19 34 34 H 1.09002 * 109.46922 * 179.97438 * 22 21 19 35 35 H 1.08002 * 120.06137 * 179.71211 * 23 18 17 36 36 H 1.08003 * 119.93873 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9988 -0.9531 5 6 3.2990 -2.2995 -0.5574 6 1 3.7563 -3.0137 -1.2260 7 6 2.8775 -2.6999 0.7031 8 7 1.9277 -2.0317 1.3226 9 14 3.6586 -4.1870 1.5204 10 1 4.8976 -3.7708 2.2252 11 1 2.7059 -4.7720 2.4978 12 1 3.9931 -5.2005 0.4878 13 16 3.4888 -0.5558 -2.5089 14 8 3.7598 0.8388 -2.4772 15 8 4.4142 -1.5163 -2.9990 16 6 2.0163 -0.7551 -3.4559 17 6 1.3986 0.3468 -4.0074 18 6 0.2344 0.1865 -4.7626 19 6 -0.4283 1.3621 -5.3605 20 8 0.0414 2.4710 -5.2004 21 8 -1.5541 1.2053 -6.0838 22 6 -2.1512 2.4052 -6.6424 23 6 -0.3035 -1.0900 -4.9450 24 6 0.3194 -2.1839 -4.3844 25 6 1.4781 -2.0195 -3.6402 26 9 2.0843 -3.0954 -3.0924 27 1 -1.0498 -0.0004 -0.0001 28 1 3.0094 -0.2414 0.9987 29 1 3.0089 0.9868 -0.2897 30 1 1.6330 -2.3117 2.2032 31 1 1.8160 1.3318 -3.8591 32 1 -2.4144 3.0893 -5.8357 33 1 -1.4386 2.8884 -7.3107 34 1 -3.0488 2.1385 -7.2003 35 1 -1.2060 -1.2191 -5.5241 36 1 -0.0958 -3.1710 -4.5244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490838705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:15 Heat of formation + Delta-G solvation = -93.128291 kcal Electronic energy + Delta-G solvation = -28106.814813 eV Core-core repulsion = 23793.888829 eV Total energy + Delta-G solvation = -4312.925984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.62700 -40.48646 -38.33298 -36.46502 -36.39017 -35.85318 -34.46822 -32.17332 -31.26971 -31.18297 -30.89368 -27.74833 -26.71627 -24.02819 -23.83903 -23.08644 -21.06464 -18.83119 -18.43006 -17.86887 -17.46723 -17.00417 -16.73324 -16.56453 -16.38484 -15.82334 -15.46654 -15.22160 -14.70278 -14.40933 -14.07310 -13.85814 -13.51638 -13.46401 -13.39802 -13.02962 -12.78904 -12.52575 -12.22039 -12.05254 -11.93207 -11.45322 -11.31382 -11.07562 -10.89305 -10.85084 -10.77894 -10.59028 -10.50423 -10.37717 -10.04583 -9.74405 -9.37453 -9.17469 -8.91109 -8.65896 -8.44620 -6.76941 -4.07814 0.67061 1.17170 1.57202 2.48031 2.62886 3.03058 3.08888 3.13674 3.59158 3.73908 3.90329 4.09287 4.38451 4.44844 4.54726 4.68652 4.77625 4.95652 4.97003 5.05053 5.12302 5.33638 5.38513 5.49416 5.66321 5.75402 5.99791 6.08717 6.15220 6.23197 6.25583 6.36347 6.65171 6.88627 6.91960 7.04226 7.12490 7.72866 8.03306 8.38485 8.80771 8.84148 10.12844 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.004285 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.555935 B = 6532.740825 C = 6613.806652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.780 5.780 5 C -0.219 4.219 6 H 0.130 0.870 7 C 0.026 3.974 8 N -0.805 5.805 9 Si 0.936 3.064 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.261 1.261 13 S 2.492 3.508 14 O -0.993 6.993 15 O -0.975 6.975 16 C -0.705 4.705 17 C 0.059 3.941 18 C -0.173 4.173 19 C 0.514 3.486 20 O -0.504 6.504 21 O -0.358 6.358 22 C 0.037 3.963 23 C -0.009 4.009 24 C -0.194 4.194 25 C 0.234 3.766 26 F -0.107 7.107 27 H 0.196 0.804 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.280 0.720 31 H 0.155 0.845 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.833 0.818 -6.409 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.116 4.116 3 C 0.105 3.895 4 N -0.600 5.600 5 C -0.371 4.371 6 H 0.148 0.852 7 C -0.188 4.188 8 N -0.444 5.444 9 Si 0.761 3.239 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.185 1.185 13 S 2.589 3.411 14 O -0.983 6.983 15 O -0.964 6.964 16 C -0.779 4.779 17 C 0.039 3.961 18 C -0.175 4.175 19 C 0.359 3.641 20 O -0.392 6.392 21 O -0.275 6.275 22 C -0.057 4.057 23 C -0.027 4.027 24 C -0.213 4.213 25 C 0.213 3.787 26 F -0.085 7.085 27 H 0.213 0.787 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.162 0.838 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.018 1.651 -6.870 9.959 hybrid contribution -1.146 -0.918 0.193 1.481 sum -8.164 0.733 -6.677 10.572 Atomic orbital electron populations 1.24205 0.95309 1.05204 1.03623 1.23369 0.94552 0.96097 0.97608 1.18624 0.83933 0.90906 0.96016 1.55954 1.69862 1.15110 1.19119 1.20493 1.28874 0.88648 0.99043 0.85236 1.25763 0.95205 0.99573 0.98288 1.70237 1.21070 1.38129 1.14923 0.85750 0.79063 0.79915 0.79217 1.19340 1.20529 1.18506 1.14253 0.79253 0.73915 0.73715 1.93330 1.85670 1.32903 1.86363 1.93365 1.61919 1.61088 1.80042 1.32763 1.30536 0.96018 1.18569 1.20887 0.89575 0.98829 0.86772 1.19160 0.99565 0.91630 1.07145 1.21109 0.78412 0.88908 0.75627 1.90850 1.64072 1.26691 1.57637 1.86531 1.39496 1.38248 1.63225 1.23257 0.97993 0.85851 0.98581 1.21284 0.97346 0.90498 0.93592 1.21151 0.96822 1.00628 1.02728 1.17408 0.89641 0.82594 0.89102 1.91649 1.81796 1.52929 1.82100 0.78668 0.86291 0.89724 0.90860 0.82777 0.91784 0.91855 0.88095 0.83776 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.41 19.25 29.55 0.57 -4.85 16 2 C -0.11 -2.50 11.27 -37.13 -0.42 -2.92 16 3 C 0.23 5.03 5.45 -6.83 -0.04 4.99 16 4 N -0.78 -18.15 2.88 -62.77 -0.18 -18.33 16 5 C -0.22 -5.13 8.41 -15.06 -0.13 -5.25 16 6 H 0.13 3.07 6.78 -52.49 -0.36 2.71 16 7 C 0.03 0.58 4.95 -17.43 -0.09 0.49 16 8 N -0.80 -18.06 8.92 55.49 0.49 -17.57 16 9 Si 0.94 17.53 29.62 -169.99 -5.03 12.50 16 10 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 11 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 13 S 2.49 58.90 5.30 -107.50 -0.57 58.33 16 14 O -0.99 -24.45 15.53 -57.17 -0.89 -25.34 16 15 O -0.97 -25.05 16.20 -57.17 -0.93 -25.97 16 16 C -0.70 -15.00 5.91 -39.58 -0.23 -15.23 16 17 C 0.06 1.16 9.09 -39.19 -0.36 0.80 16 18 C -0.17 -2.95 5.87 -104.98 -0.62 -3.57 16 19 C 0.51 8.34 7.89 34.55 0.27 8.61 16 20 O -0.50 -9.36 16.13 -19.26 -0.31 -9.67 16 21 O -0.36 -4.66 9.81 -40.56 -0.40 -5.05 16 22 C 0.04 0.35 10.56 101.05 1.07 1.41 16 23 C -0.01 -0.13 9.61 -39.19 -0.38 -0.50 16 24 C -0.19 -3.05 10.01 -39.57 -0.40 -3.45 16 25 C 0.23 4.62 7.22 -39.26 -0.28 4.34 16 26 F -0.11 -2.25 14.72 2.25 0.03 -2.22 16 27 H 0.20 3.33 7.80 -54.10 -0.42 2.90 16 28 H 0.12 2.56 6.37 -51.93 -0.33 2.23 16 29 H 0.08 1.75 6.95 -51.93 -0.36 1.39 16 30 H 0.28 5.93 8.31 -40.82 -0.34 5.59 16 31 H 0.15 3.14 6.91 -52.49 -0.36 2.77 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.59 7.61 -52.49 -0.40 1.19 16 36 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -29.78 339.13 -6.75 -36.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.06 Total: 6.80 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.02 Total: -15.11 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.31 Total: -35.90 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -2.52 Total: -66.04 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.03 Total: -2.22 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: 58.90 SS G_CDS: -0.57 Total: 58.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.78 -6.75 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490838705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.596 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds