Wall clock time and date at job start Sat Apr 11 2020 06:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46750 * 198.00109 * 3 2 1 5 5 C 1.36928 * 120.00130 * 274.03701 * 4 3 2 6 6 H 1.07999 * 120.00007 * 190.47718 * 5 4 3 7 7 C 1.38815 * 120.00113 * 10.47525 * 5 4 3 8 8 N 1.31618 * 119.99807 * 9.59589 * 7 5 4 9 9 Si 1.86802 * 120.00019 * 189.59423 * 7 5 4 10 10 H 1.48500 * 109.47074 * 60.00111 * 9 7 5 11 11 H 1.48500 * 109.47344 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47076 * 300.00326 * 9 7 5 13 13 S 1.65604 * 119.99773 * 94.03677 * 4 3 2 14 14 O 1.42101 * 106.40178 * 341.02444 * 13 4 3 15 15 O 1.42094 * 106.40040 * 208.10685 * 13 4 3 16 16 C 1.76202 * 107.21839 * 94.56587 * 13 4 3 17 17 C 1.37975 * 120.04877 * 13.01544 * 16 13 4 18 18 C 1.38305 * 120.17659 * 180.27884 * 17 16 13 19 19 C 1.38603 * 120.27837 * 359.73957 * 18 17 16 20 20 F 1.35103 * 119.94801 * 180.02562 * 19 18 17 21 21 C 1.38158 * 120.09810 * 359.97438 * 19 18 17 22 22 C 1.39602 * 120.04930 * 192.76072 * 16 13 4 23 23 C 1.47734 * 120.13988 * 359.97438 * 22 16 13 24 24 O 1.21472 * 119.99894 * 352.64394 * 23 22 16 25 25 O 1.34705 * 119.99757 * 172.91076 * 23 22 16 26 26 C 1.45205 * 116.99613 * 180.02562 * 25 23 22 27 27 H 4.40641 * 5.51388 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47075 * 78.00653 * 3 2 1 29 29 H 1.09001 * 109.47422 * 318.00082 * 3 2 1 30 30 H 0.97001 * 119.99551 * 179.97438 * 8 7 5 31 31 H 1.07997 * 119.91164 * 0.02562 * 17 16 13 32 32 H 1.08000 * 119.86314 * 179.72083 * 18 17 16 33 33 H 1.08001 * 120.08916 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.47473 * 300.00689 * 26 25 23 35 35 H 1.08998 * 109.47221 * 60.00675 * 26 25 23 36 36 H 1.08998 * 109.47065 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3146 0.4269 5 6 3.2827 2.3206 -0.4900 6 1 3.7972 3.2296 -0.2155 7 6 2.7726 2.1720 -1.7725 8 7 1.9864 1.1548 -2.0542 9 14 3.2019 3.4160 -3.0983 10 1 4.6732 3.4387 -3.2979 11 1 2.5353 3.0347 -4.3693 12 1 2.7380 4.7637 -2.6814 13 16 3.5047 1.5830 2.0183 14 8 2.8489 0.5641 2.7606 15 8 3.2972 2.9695 2.2503 16 6 5.2338 1.3005 2.2056 17 6 6.0410 1.1933 1.0918 18 6 7.3976 0.9659 1.2356 19 6 7.9567 0.8494 2.4985 20 9 9.2828 0.6278 2.6313 21 6 7.1600 0.9608 3.6218 22 6 5.7900 1.1902 3.4813 23 6 4.9316 1.3103 4.6777 24 8 3.7677 1.6372 4.5597 25 8 5.4411 1.0625 5.8998 26 6 4.5397 1.1995 7.0299 27 1 -1.0502 -0.0005 0.0000 28 1 3.0095 -0.2127 -1.0052 29 1 3.0098 -0.7629 0.6876 30 1 1.6297 1.0512 -2.9502 31 1 5.6117 1.2832 0.1049 32 1 8.0240 0.8783 0.3602 33 1 7.5959 0.8704 4.6058 34 1 4.1620 2.2211 7.0716 35 1 3.7051 0.5080 6.9149 36 1 5.0755 0.9727 7.9516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490948624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:42 Heat of formation + Delta-G solvation = -79.359689 kcal Electronic energy + Delta-G solvation = -28188.984226 eV Core-core repulsion = 23876.655294 eV Total energy + Delta-G solvation = -4312.328933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -49.16846 -40.70663 -38.66337 -36.70789 -36.23252 -36.00822 -34.65703 -31.92546 -31.67051 -31.07067 -30.69982 -27.89013 -26.46778 -24.59440 -23.68260 -23.16428 -21.30021 -18.84735 -18.59557 -17.92574 -17.54786 -17.42508 -16.69571 -16.48412 -16.19781 -16.04822 -15.87942 -15.80642 -14.61372 -14.50860 -14.37054 -13.65097 -13.57029 -13.48896 -13.40466 -13.32672 -13.09795 -12.45272 -12.35795 -12.20803 -11.74608 -11.46415 -11.19479 -11.03403 -10.99520 -10.88016 -10.83036 -10.58516 -10.50482 -10.29736 -10.15953 -9.71383 -9.34959 -9.16255 -9.03021 -8.71236 -8.14351 -6.16675 -3.92288 0.26544 0.83815 1.29823 2.34584 2.45893 3.18902 3.25505 3.27569 3.33655 3.78509 3.91905 4.19034 4.33870 4.40717 4.51889 4.63267 4.66507 4.92173 5.00966 5.05059 5.15340 5.18137 5.37165 5.46437 5.51797 5.68636 5.72053 5.77869 5.94462 5.98439 6.16366 6.25348 6.56761 6.86452 7.13483 7.36839 7.51930 7.57153 8.35822 8.86214 9.11616 9.24679 10.76084 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.005183 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.181583 B = 5400.652851 C = 6773.480243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.085 4.085 3 C 0.248 3.752 4 N -0.850 5.850 5 C -0.326 4.326 6 H 0.108 0.892 7 C 0.043 3.957 8 N -0.871 5.871 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 S 2.673 3.327 14 O -0.957 6.957 15 O -0.949 6.949 16 C -0.625 4.625 17 C -0.007 4.007 18 C -0.138 4.138 19 C 0.122 3.878 20 F -0.132 7.132 21 C -0.121 4.121 22 C -0.012 4.012 23 C 0.494 3.506 24 O -0.466 6.466 25 O -0.349 6.349 26 C 0.033 3.967 27 H 0.196 0.804 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 -3.210 8.320 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.088 4.088 3 C 0.123 3.877 4 N -0.684 5.684 5 C -0.456 4.456 6 H 0.125 0.875 7 C -0.162 4.162 8 N -0.511 5.511 9 Si 0.745 3.255 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 S 2.757 3.243 14 O -0.946 6.946 15 O -0.939 6.939 16 C -0.702 4.702 17 C -0.026 4.026 18 C -0.157 4.157 19 C 0.103 3.897 20 F -0.111 7.111 21 C -0.140 4.140 22 C -0.015 4.015 23 C 0.336 3.664 24 O -0.353 6.353 25 O -0.266 6.266 26 C -0.060 4.060 27 H 0.213 0.787 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.715 -2.943 8.899 13.499 hybrid contribution 0.774 0.479 -0.861 1.253 sum 10.489 -2.464 8.038 13.442 Atomic orbital electron populations 1.24167 0.95338 1.03228 1.07491 1.23002 0.94220 0.97152 0.94450 1.18101 0.84777 0.82777 1.02036 1.53398 1.72135 1.17359 1.25466 1.19276 1.38085 0.95907 0.92373 0.87474 1.25098 0.95471 0.97643 0.98026 1.70017 1.30208 1.29906 1.20961 0.86146 0.78573 0.80762 0.80041 1.19940 1.20964 1.19897 1.03221 0.74391 0.74353 0.72343 1.93505 1.71668 1.59928 1.69517 1.93489 1.83722 1.32174 1.84502 1.32522 1.32152 1.09073 0.96453 1.21183 0.91965 0.90176 0.99242 1.21612 0.96650 1.01115 0.96365 1.17670 0.77717 0.99998 0.94351 1.91536 1.30909 1.91847 1.96760 1.21383 0.92639 1.00720 0.99271 1.18313 0.92586 1.01127 0.89446 1.21152 0.86194 0.75030 0.83996 1.90945 1.17034 1.41389 1.85922 1.86474 1.43747 1.81147 1.15218 1.23400 0.94098 1.03262 0.85246 0.78695 0.85812 0.92523 0.92108 0.80990 0.83225 0.82768 0.91343 0.91090 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 77. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.51 19.25 29.55 0.57 -5.94 16 2 C -0.09 -2.09 11.23 -37.12 -0.42 -2.51 16 3 C 0.25 5.63 5.14 -6.83 -0.04 5.59 16 4 N -0.85 -20.06 2.12 -62.77 -0.13 -20.19 16 5 C -0.33 -7.98 8.42 -15.06 -0.13 -8.11 16 6 H 0.11 2.57 7.50 -52.49 -0.39 2.18 16 7 C 0.04 1.03 5.25 -17.43 -0.09 0.94 16 8 N -0.87 -21.78 8.27 55.49 0.46 -21.32 16 9 Si 0.92 19.18 29.56 -169.99 -5.03 14.15 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 S 2.67 62.58 3.92 -107.50 -0.42 62.15 16 14 O -0.96 -23.80 14.45 -67.03 -0.97 -24.76 16 15 O -0.95 -24.98 16.52 -64.51 -1.07 -26.05 16 16 C -0.62 -11.77 5.86 -39.17 -0.23 -12.00 16 17 C -0.01 -0.12 9.55 -39.65 -0.38 -0.49 16 18 C -0.14 -1.78 10.02 -39.42 -0.39 -2.18 16 19 C 0.12 1.58 7.29 -39.48 -0.29 1.29 16 20 F -0.13 -1.59 17.26 2.25 0.04 -1.55 16 21 C -0.12 -1.64 9.59 -39.09 -0.38 -2.02 16 22 C -0.01 -0.21 5.87 -104.99 -0.62 -0.83 16 23 C 0.49 8.89 7.72 34.61 0.27 9.15 16 24 O -0.47 -10.11 11.66 -29.58 -0.35 -10.46 16 25 O -0.35 -4.90 9.84 -40.50 -0.40 -5.29 16 26 C 0.03 0.36 10.56 101.05 1.07 1.42 16 27 H 0.20 3.71 7.80 -54.08 -0.42 3.29 16 28 H 0.12 2.78 6.21 -51.93 -0.32 2.46 16 29 H 0.06 1.14 7.52 -51.93 -0.39 0.75 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.17 2.67 6.46 -52.49 -0.34 2.33 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.15 1.68 7.63 -52.49 -0.40 1.28 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -32.68 334.60 -6.96 -39.64 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.09 Total: 4.32 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.05 Total: -15.67 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.33 Total: -41.51 kcal Atomic # 8 Polarization: -63.79 SS G_CDS: -2.78 Total: -66.56 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 62.58 SS G_CDS: -0.42 Total: 62.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.68 -6.96 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490948624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.724 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds