Wall clock time and date at job start Sat Apr 11 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47042 * 140.70941 * 3 2 1 5 5 C 1.53005 * 109.47293 * 20.71656 * 3 2 1 6 6 C 1.53001 * 109.47175 * 175.00029 * 5 3 2 7 7 C 1.53003 * 109.46806 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47393 * 260.71503 * 3 2 1 9 9 S 1.65602 * 119.99814 * 264.68194 * 8 3 2 10 10 O 1.42097 * 106.40135 * 178.07646 * 9 8 3 11 11 O 1.42103 * 106.40083 * 310.99807 * 9 8 3 12 12 C 1.76202 * 107.21823 * 64.53676 * 9 8 3 13 13 C 1.38633 * 119.75636 * 244.24298 * 12 9 8 14 14 C 1.37611 * 120.26177 * 179.76273 * 13 12 9 15 15 C 1.40734 * 119.76796 * 0.50970 * 14 13 12 16 16 C 1.41396 * 120.23726 * 179.76631 * 15 14 13 17 17 H 1.08005 * 120.00416 * 151.81948 * 16 15 14 18 18 C 1.39949 * 120.00062 * 331.82884 * 16 15 14 19 19 N 1.30826 * 120.00142 * 161.39785 * 18 16 15 20 20 Si 1.86804 * 119.99748 * 341.39401 * 18 16 15 21 21 H 1.48496 * 109.47076 * 95.31923 * 20 18 16 22 22 H 1.48497 * 109.47100 * 215.32388 * 20 18 16 23 23 H 1.48506 * 109.46837 * 335.32087 * 20 18 16 24 24 C 1.40676 * 119.53079 * 359.74521 * 15 14 13 25 25 C 1.37755 * 119.72666 * 359.97438 * 24 15 14 26 26 Cl 1.73606 * 119.88584 * 179.97438 * 25 24 15 27 27 H 4.18732 * 15.04014 * 0.02562 * 4 2 1 28 28 H 1.08998 * 109.46955 * 294.99697 * 5 3 2 29 29 H 1.09000 * 109.47277 * 54.99472 * 5 3 2 30 30 H 1.08998 * 109.46909 * 299.99697 * 6 5 3 31 31 H 1.08996 * 109.47008 * 59.99631 * 6 5 3 32 32 H 1.09006 * 109.46921 * 299.99288 * 7 6 5 33 33 H 1.08996 * 109.47656 * 60.00005 * 7 6 5 34 34 H 1.09000 * 109.46628 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00262 * 84.95331 * 8 3 2 36 36 H 1.07998 * 119.86824 * 359.97438 * 13 12 9 37 37 H 1.07996 * 120.11201 * 180.22908 * 14 13 12 38 38 H 0.97000 * 119.99732 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.13736 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0089 0.7962 -0.6508 5 6 3.1566 -1.3484 -0.5103 6 6 4.6814 -1.3049 -0.6285 7 6 5.1919 -2.6537 -1.1394 8 7 3.1342 0.2237 1.3631 9 16 3.5349 1.7520 1.8593 10 8 3.9231 1.6426 3.2219 11 8 4.3786 2.2927 0.8518 12 6 2.0571 2.7114 1.8385 13 6 1.9460 3.7850 0.9685 14 6 0.7947 4.5383 0.9401 15 6 -0.2686 4.2223 1.8061 16 6 -1.4542 4.9927 1.7887 17 1 -2.3951 4.5423 2.0684 18 6 -1.4084 6.3388 1.4088 19 7 -2.5036 6.9521 1.0402 20 14 0.2167 7.2600 1.4281 21 1 0.8184 7.2306 0.0708 22 1 -0.0176 8.6686 1.8354 23 1 1.1410 6.6127 2.3935 24 6 -0.1439 3.1341 2.6889 25 6 1.0153 2.3900 2.6964 26 17 1.1739 1.0467 3.7846 27 1 -1.0500 -0.0003 0.0009 28 1 2.8686 -2.1337 0.1885 29 1 2.7220 -1.5550 -1.4883 30 1 4.9694 -0.5195 -1.3273 31 1 5.1159 -1.0982 0.3495 32 1 4.9039 -3.4394 -0.4408 33 1 4.7574 -2.8599 -2.1175 34 1 6.2782 -2.6226 -1.2240 35 1 3.2266 -0.5243 1.9737 36 1 2.7649 4.0291 0.3080 37 1 0.7094 5.3719 0.2588 38 1 -2.4719 7.8853 0.7773 39 1 -0.9540 2.8826 3.3573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491374232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:46 Heat of formation + Delta-G solvation = -28.048677 kcal Electronic energy + Delta-G solvation = -25444.965924 eV Core-core repulsion = 21699.031473 eV Total energy + Delta-G solvation = -3745.934451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.12941 -37.55827 -36.59912 -35.83535 -35.26135 -34.07274 -33.54088 -31.91871 -30.99040 -29.83944 -28.42632 -25.96279 -24.11228 -22.05463 -21.42115 -21.20839 -19.22496 -18.26686 -17.96690 -17.58690 -16.81541 -15.99510 -15.67163 -15.05994 -14.66426 -14.58516 -14.52691 -14.11223 -13.80624 -13.36649 -13.07811 -12.95446 -12.86763 -12.69289 -12.08945 -11.88168 -11.77408 -11.54581 -11.53579 -11.49779 -11.27115 -11.10825 -11.04626 -10.99953 -10.72650 -10.61908 -10.40610 -10.22204 -10.04055 -9.95874 -9.89213 -9.61889 -9.34786 -8.32616 -7.91390 -7.47564 -5.07593 1.05432 1.82704 2.32350 2.73971 2.84379 2.93479 2.98433 3.06098 3.10742 3.64174 3.71693 3.96274 4.29406 4.46834 4.83314 4.89910 4.92235 5.01395 5.12343 5.27090 5.40637 5.49318 5.70390 5.71975 5.77853 5.92436 5.97670 6.09329 6.21588 6.23066 6.25768 6.31844 6.33953 6.62533 6.84672 6.95669 7.02078 7.20011 7.39787 7.56321 7.82084 7.90372 8.13259 8.24727 9.50151 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004070 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.599919 B = 6878.235322 C = 6925.038266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.209 4.209 3 C 0.269 3.731 4 H 0.110 0.890 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.151 4.151 8 N -1.110 6.110 9 S 2.695 3.305 10 O -0.966 6.966 11 O -0.981 6.981 12 C -0.794 4.794 13 C 0.024 3.976 14 C -0.253 4.253 15 C 0.121 3.879 16 C -0.402 4.402 17 H 0.102 0.898 18 C 0.081 3.919 19 N -0.770 5.770 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.237 1.237 24 C -0.208 4.208 25 C 0.102 3.898 26 Cl -0.096 7.096 27 H 0.213 0.787 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.296 0.704 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 -11.298 -3.697 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.162 3.838 4 H 0.128 0.872 5 C -0.153 4.153 6 C -0.166 4.166 7 C -0.209 4.209 8 N -0.865 5.865 9 S 2.790 3.210 10 O -0.956 6.956 11 O -0.971 6.971 12 C -0.888 4.888 13 C 0.004 3.996 14 C -0.273 4.273 15 C 0.116 3.884 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.145 4.145 19 N -0.390 5.390 20 Si 0.739 3.261 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.160 1.160 24 C -0.229 4.229 25 C 0.074 3.926 26 Cl -0.067 7.067 27 H 0.230 0.770 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.340 -10.790 -3.559 13.526 hybrid contribution -0.714 0.307 0.230 0.811 sum 6.626 -10.482 -3.329 12.840 Atomic orbital electron populations 1.24874 0.95823 0.99795 0.98257 1.23351 0.94580 1.01291 1.01879 1.17501 0.83257 0.99775 0.83291 0.87233 1.21826 0.96042 0.95471 1.01987 1.21568 0.94791 0.97948 1.02325 1.21768 1.00870 0.97215 1.01004 1.55783 1.83166 1.26941 1.20606 1.01347 0.74281 0.72251 0.73081 1.93564 1.82382 1.85764 1.33926 1.93492 1.64930 1.78080 1.60588 1.29083 1.21848 1.20227 1.17636 1.20205 0.96134 0.90835 0.92450 1.21092 0.96407 1.04820 1.04940 1.17717 0.91806 0.90784 0.88070 1.19873 0.95314 0.94446 1.33093 0.88027 1.26419 0.99373 0.98457 0.90203 1.69658 1.30564 1.13386 1.25378 0.86234 0.81152 0.77513 0.81193 1.18708 1.21004 1.16021 1.20874 0.97035 1.00973 1.04028 1.19935 0.94885 0.88070 0.89690 1.98331 1.97722 1.46283 1.64369 0.76962 0.90966 0.90344 0.91275 0.91421 0.92839 0.92796 0.92739 0.75265 0.86172 0.87209 0.89279 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 19.25 29.55 0.57 -1.87 16 2 C -0.21 -3.06 12.85 -37.13 -0.48 -3.54 16 3 C 0.27 3.56 2.74 -70.72 -0.19 3.36 16 4 H 0.11 1.49 7.51 -51.93 -0.39 1.10 16 5 C -0.11 -1.15 4.77 -26.73 -0.13 -1.27 16 6 C -0.13 -1.25 5.82 -26.73 -0.16 -1.41 16 7 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 8 N -1.11 -15.94 4.61 -7.30 -0.03 -15.98 16 9 S 2.69 49.96 5.03 -107.50 -0.54 49.42 16 10 O -0.97 -19.86 16.50 -57.17 -0.94 -20.80 16 11 O -0.98 -19.37 16.30 -57.17 -0.93 -20.30 16 12 C -0.79 -16.48 5.86 -39.25 -0.23 -16.71 16 13 C 0.02 0.51 9.52 -39.66 -0.38 0.13 16 14 C -0.25 -5.67 7.17 -38.87 -0.28 -5.94 16 15 C 0.12 2.80 5.14 -106.83 -0.55 2.25 16 16 C -0.40 -9.62 9.58 -37.74 -0.36 -9.98 16 17 H 0.10 2.50 8.06 -52.48 -0.42 2.08 16 18 C 0.08 1.87 5.41 -17.34 -0.09 1.77 16 19 N -0.77 -18.00 13.93 55.55 0.77 -17.23 16 20 Si 0.91 18.83 24.48 -169.99 -4.16 14.67 16 21 H -0.26 -5.18 6.68 56.52 0.38 -4.81 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.24 -5.13 6.84 56.52 0.39 -4.75 16 24 C -0.21 -4.57 9.57 -38.84 -0.37 -4.94 16 25 C 0.10 2.14 6.29 -39.58 -0.25 1.89 16 26 Cl -0.10 -1.78 26.40 -51.86 -1.37 -3.14 16 27 H 0.21 2.55 7.80 -54.09 -0.42 2.13 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.41 5.08 8.84 -34.47 -0.30 4.77 16 36 H 0.12 2.33 7.31 -52.49 -0.38 1.95 16 37 H 0.11 2.39 4.53 -52.49 -0.24 2.15 16 38 H 0.30 6.19 8.30 -40.82 -0.34 5.85 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -27.72 358.77 -9.02 -36.74 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.70 Total: 8.31 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: -2.53 Total: -37.10 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.74 Total: -33.20 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.88 Total: -41.11 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.16 Total: 14.67 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.54 Total: 49.42 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.37 Total: -3.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.72 -9.02 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491374232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.695 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds