Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46988 * 186.96359 * 3 2 1 5 5 C 1.53000 * 109.47021 * 66.96695 * 3 2 1 6 6 N 1.46492 * 109.47422 * 306.96681 * 3 2 1 7 7 C 1.46499 * 119.99860 * 305.61635 * 6 3 2 8 8 S 1.65600 * 120.00147 * 125.61418 * 6 3 2 9 9 O 1.42095 * 106.40499 * 38.77071 * 8 6 3 10 10 O 1.42102 * 106.40268 * 171.68915 * 8 6 3 11 11 C 1.76201 * 107.21839 * 285.23025 * 8 6 3 12 12 C 1.38633 * 119.75703 * 114.90094 * 11 8 6 13 13 C 1.37600 * 120.26100 * 179.76541 * 12 11 8 14 14 C 1.40741 * 119.77106 * 0.50482 * 13 12 11 15 15 C 1.41405 * 120.23599 * 179.77204 * 14 13 12 16 16 H 1.07998 * 119.99811 * 144.77885 * 15 14 13 17 17 C 1.39934 * 119.99788 * 324.77576 * 15 14 13 18 18 N 1.30830 * 119.99903 * 169.14968 * 17 15 14 19 19 Si 1.86805 * 120.00445 * 349.15252 * 17 15 14 20 20 H 1.48500 * 109.47112 * 87.08033 * 19 17 15 21 21 H 1.48501 * 109.47228 * 207.08180 * 19 17 15 22 22 H 1.48505 * 109.46692 * 327.07999 * 19 17 15 23 23 C 1.40681 * 119.52565 * 359.74496 * 14 13 12 24 24 C 1.37748 * 119.72981 * 0.02562 * 23 14 13 25 25 Cl 1.73602 * 119.88643 * 179.97438 * 24 23 14 26 26 H 4.44651 * 5.63387 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47029 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46864 * 300.00486 * 4 3 2 29 29 H 1.08996 * 109.46629 * 59.99955 * 4 3 2 30 30 H 1.09004 * 109.47482 * 289.92732 * 5 3 2 31 31 H 1.09004 * 109.47380 * 49.92699 * 5 3 2 32 32 H 1.08999 * 109.47603 * 169.92473 * 5 3 2 33 33 H 1.09001 * 109.47052 * 269.99579 * 7 6 3 34 34 H 1.08999 * 109.47357 * 30.00140 * 7 6 3 35 35 H 1.09006 * 109.47396 * 150.00104 * 7 6 3 36 36 H 1.07994 * 119.86544 * 359.97438 * 12 11 8 37 37 H 1.07994 * 120.11530 * 180.23250 * 13 12 11 38 38 H 0.97005 * 120.00017 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.12958 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4328 0.1749 5 6 3.1563 -0.5635 -1.3275 6 7 3.1348 -0.8297 1.1035 7 6 2.6823 -0.5692 2.4723 8 16 4.1987 -2.0627 0.8037 9 8 5.0954 -1.5863 -0.1904 10 8 4.6268 -2.5406 2.0716 11 6 3.2833 -3.3726 0.0614 12 6 3.5529 -3.7456 -1.2463 13 6 2.8477 -4.7703 -1.8345 14 6 1.8418 -5.4339 -1.1074 15 6 1.1078 -6.4850 -1.7039 16 1 0.7905 -7.3280 -1.1080 17 6 0.7923 -6.4328 -3.0662 18 7 0.3048 -7.4885 -3.6657 19 14 1.0674 -4.8558 -4.0290 20 1 2.4609 -4.8254 -4.5413 21 1 0.1191 -4.8009 -5.1705 22 1 0.8410 -3.6876 -3.1406 23 6 1.5724 -5.0443 0.2173 24 6 2.2939 -4.0190 0.7880 25 17 1.9643 -3.5346 2.4221 26 1 -1.0502 -0.0004 -0.0002 27 1 4.2454 1.4332 0.1753 28 1 2.7916 2.0505 -0.6462 29 1 2.7918 1.8347 1.1206 30 1 2.9476 -1.6325 -1.3722 31 1 2.6534 -0.0604 -2.1534 32 1 4.2312 -0.3997 -1.4028 33 1 3.3574 0.1414 2.9491 34 1 1.6748 -0.1538 2.4491 35 1 2.6779 -1.5014 3.0372 36 1 4.3218 -3.2321 -1.8043 37 1 3.0622 -5.0614 -2.8521 38 1 0.0857 -7.4523 -4.6100 39 1 0.8030 -5.5471 0.7843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491537185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = 6.571386 kcal Electronic energy + Delta-G solvation = -26488.291960 eV Core-core repulsion = 22743.858748 eV Total energy + Delta-G solvation = -3744.433212 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.42828 -38.08560 -36.81815 -35.92574 -35.29929 -34.05569 -32.74323 -31.22360 -30.90834 -29.93602 -27.58954 -25.93334 -25.44347 -22.71505 -22.09426 -21.45853 -18.96140 -18.04653 -17.89550 -17.27243 -16.53246 -16.06998 -15.65549 -14.95077 -14.68618 -14.61563 -14.10779 -13.84296 -13.49241 -13.21221 -13.16069 -13.09468 -12.88767 -12.54852 -12.46853 -12.12012 -11.86473 -11.73594 -11.60071 -11.51732 -11.34574 -11.21690 -11.05036 -10.94170 -10.68405 -10.49018 -10.40259 -10.33638 -10.13268 -10.02579 -9.78769 -9.49186 -8.98893 -8.27864 -7.98585 -7.40729 -5.07471 0.95028 1.74415 2.22918 2.64512 2.77378 2.84403 2.95340 2.95620 3.02220 3.54391 3.63689 3.96119 4.16880 4.42672 4.78149 4.84593 4.94446 5.04200 5.22379 5.59232 5.62297 5.67136 5.70043 5.71522 5.93013 5.96209 6.01634 6.04861 6.15333 6.22295 6.25563 6.28929 6.55766 6.58938 6.78260 6.80898 6.89415 6.99452 7.37732 7.52413 7.72369 7.83958 8.08851 8.24856 9.57883 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.005377 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.765072 B = 5206.135833 C = 5722.284218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.181 4.181 3 C 0.298 3.702 4 C -0.149 4.149 5 C -0.213 4.213 6 N -0.990 5.990 7 C 0.088 3.912 8 S 2.697 3.303 9 O -0.975 6.975 10 O -0.963 6.963 11 C -0.792 4.792 12 C 0.020 3.980 13 C -0.250 4.250 14 C 0.123 3.877 15 C -0.409 4.409 16 H 0.103 0.897 17 C 0.079 3.921 18 N -0.779 5.779 19 Si 0.914 3.086 20 H -0.259 1.259 21 H -0.284 1.284 22 H -0.241 1.241 23 C -0.203 4.203 24 C 0.095 3.905 25 Cl -0.091 7.091 26 H 0.216 0.784 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.295 0.705 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 12.945 3.580 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.210 3.790 4 C -0.207 4.207 5 C -0.270 4.270 6 N -0.826 5.826 7 C -0.057 4.057 8 S 2.795 3.205 9 O -0.965 6.965 10 O -0.954 6.954 11 C -0.885 4.885 12 C 0.000 4.000 13 C -0.270 4.270 14 C 0.118 3.882 15 C -0.436 4.436 16 H 0.121 0.879 17 C -0.144 4.144 18 N -0.401 5.401 19 Si 0.739 3.261 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.164 1.164 23 C -0.224 4.224 24 C 0.067 3.933 25 Cl -0.063 7.063 26 H 0.233 0.767 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.219 12.813 3.759 13.409 hybrid contribution -1.132 0.014 -0.640 1.301 sum 0.087 12.827 3.119 13.201 Atomic orbital electron populations 1.24877 0.95759 1.00384 0.99836 1.23162 0.94169 1.00374 1.00598 1.16972 0.83275 0.91960 0.86743 1.22140 1.02141 0.93977 1.02482 1.23153 1.05648 1.03533 0.94667 1.57742 1.64761 1.47601 1.12484 1.21621 1.00109 1.02618 0.81396 1.01440 0.73338 0.72674 0.73088 1.93460 1.62216 1.80191 1.60657 1.93531 1.79852 1.80234 1.41763 1.29308 1.23405 1.28098 1.07703 1.20242 0.95313 0.93378 0.91113 1.21286 1.01251 1.03064 1.01356 1.17804 0.89442 0.89877 0.91047 1.19823 1.26307 1.03489 0.93939 0.87924 1.26330 0.91871 0.98553 0.97626 1.69617 1.27950 1.29418 1.13080 0.86270 0.78828 0.82069 0.78939 1.18456 1.21081 1.16404 1.21021 1.03499 1.00375 0.97507 1.20011 0.94527 0.95791 0.82947 1.98316 1.94839 1.90500 1.22601 0.76709 0.90873 0.91272 0.91945 0.90088 0.90393 0.86346 0.92923 0.91311 0.89896 0.85761 0.86587 0.89384 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 19.25 29.55 0.57 -1.95 16 2 C -0.18 -2.66 10.73 -37.12 -0.40 -3.06 16 3 C 0.30 4.33 1.03 -134.61 -0.14 4.19 16 4 C -0.15 -1.70 8.49 37.16 0.32 -1.38 16 5 C -0.21 -3.25 7.01 37.16 0.26 -2.99 16 6 N -0.99 -15.73 2.95 -110.66 -0.33 -16.06 16 7 C 0.09 1.22 9.00 59.85 0.54 1.76 16 8 S 2.70 51.03 4.45 -107.50 -0.48 50.55 16 9 O -0.97 -18.67 13.22 -57.17 -0.76 -19.43 16 10 O -0.96 -19.93 15.19 -57.17 -0.87 -20.80 16 11 C -0.79 -16.44 4.93 -39.25 -0.19 -16.64 16 12 C 0.02 0.41 7.60 -39.67 -0.30 0.11 16 13 C -0.25 -5.53 7.16 -38.87 -0.28 -5.81 16 14 C 0.12 2.85 5.04 -106.82 -0.54 2.32 16 15 C -0.41 -9.89 9.59 -37.74 -0.36 -10.25 16 16 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.08 1.85 5.47 -17.34 -0.09 1.76 16 18 N -0.78 -18.46 13.93 55.55 0.77 -17.69 16 19 Si 0.91 18.62 24.52 -169.99 -4.17 14.46 16 20 H -0.26 -5.07 6.45 56.52 0.36 -4.70 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.24 -5.06 6.98 56.52 0.39 -4.67 16 23 C -0.20 -4.48 9.57 -38.84 -0.37 -4.86 16 24 C 0.10 2.01 6.29 -39.58 -0.25 1.76 16 25 Cl -0.09 -1.69 23.25 -51.86 -1.21 -2.90 16 26 H 0.22 2.10 7.80 -54.08 -0.42 1.68 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 7.81 -51.93 -0.41 0.24 16 30 H 0.08 1.41 3.79 -51.93 -0.20 1.21 16 31 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.12 1.80 5.86 -51.93 -0.30 1.49 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 7.04 -51.93 -0.37 0.49 16 35 H 0.08 1.25 4.56 -51.93 -0.24 1.01 16 36 H 0.12 2.32 7.22 -52.49 -0.38 1.94 16 37 H 0.12 2.48 4.71 -52.49 -0.25 2.23 16 38 H 0.30 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -27.00 334.93 -7.49 -34.49 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.27 Total: 7.36 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: -1.24 Total: -35.04 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.45 Total: -33.75 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.62 Total: -40.23 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.17 Total: 14.46 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.48 Total: 50.55 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.21 Total: -2.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.00 -7.49 -34.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491537185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.062 kcal (2) G-P(sol) polarization free energy of solvation -26.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds