Wall clock time and date at job start Sat Apr 11 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47198 * 58.49912 * 3 2 1 5 5 C 1.36938 * 120.00524 * 272.97245 * 4 3 2 6 6 H 1.08001 * 120.00077 * 188.88698 * 5 4 3 7 7 C 1.38812 * 119.99755 * 8.88084 * 5 4 3 8 8 N 1.31615 * 120.00136 * 24.38700 * 7 5 4 9 9 Si 1.86799 * 119.99994 * 204.39154 * 7 5 4 10 10 H 1.48497 * 109.47427 * 89.99722 * 9 7 5 11 11 H 1.48501 * 109.47204 * 210.00155 * 9 7 5 12 12 H 1.48504 * 109.47082 * 329.99884 * 9 7 5 13 13 S 1.65610 * 119.99807 * 92.96950 * 4 3 2 14 14 O 1.42091 * 106.39862 * 23.53931 * 13 4 3 15 15 O 1.42101 * 106.39843 * 156.45881 * 13 4 3 16 16 C 1.76200 * 107.21582 * 269.99831 * 13 4 3 17 17 C 1.38234 * 120.00311 * 114.72726 * 16 13 4 18 18 C 1.38219 * 120.01209 * 179.79197 * 17 16 13 19 19 C 1.50704 * 119.98660 * 180.20806 * 18 17 16 20 20 C 1.52996 * 109.47122 * 270.24981 * 19 18 17 21 21 C 1.53000 * 109.47246 * 179.97438 * 20 19 18 22 22 C 1.38261 * 120.02658 * 0.45876 * 18 17 16 23 23 C 1.38188 * 120.01360 * 359.79179 * 22 18 17 24 24 C 1.38328 * 120.00857 * 294.99884 * 16 13 4 25 25 Cl 1.73595 * 120.01370 * 359.97438 * 24 16 13 26 26 H 4.40640 * 5.51359 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.46591 * 298.50116 * 3 2 1 28 28 H 1.09002 * 109.46945 * 178.50360 * 3 2 1 29 29 H 0.96998 * 120.00306 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.99613 * 359.97438 * 17 16 13 31 31 H 1.08997 * 109.47207 * 30.24925 * 19 18 17 32 32 H 1.09003 * 109.47114 * 150.25229 * 19 18 17 33 33 H 1.09003 * 109.47431 * 299.99946 * 20 19 18 34 34 H 1.09003 * 109.47439 * 60.00019 * 20 19 18 35 35 H 1.09006 * 109.47237 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.47175 * 300.00000 * 21 20 19 37 37 H 1.09003 * 109.47022 * 60.00228 * 21 20 19 38 38 H 1.08000 * 119.99354 * 179.77525 * 22 18 17 39 39 H 1.08000 * 120.01241 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7208 -1.1776 5 6 3.3056 -2.0785 -1.1268 6 1 3.7984 -2.5915 -1.9394 7 6 2.8456 -2.7953 -0.0307 8 7 1.8643 -2.3164 0.7041 9 14 3.6194 -4.4397 0.4015 10 1 4.7550 -4.2227 1.3334 11 1 2.6052 -5.3086 1.0509 12 1 4.1131 -5.0950 -0.8362 13 16 3.4804 0.1057 -2.5705 14 8 3.7459 1.4474 -2.1854 15 8 4.4075 -0.6940 -3.2918 16 6 2.0047 0.1468 -3.5324 17 6 1.3773 1.3524 -3.7847 18 6 0.2221 1.3854 -4.5428 19 6 -0.4588 2.7006 -4.8214 20 6 -1.4746 2.9933 -3.7155 21 6 -2.1655 4.3290 -3.9980 22 6 -0.3119 0.2115 -5.0414 23 6 0.3114 -0.9949 -4.7855 24 6 1.4706 -1.0280 -4.0305 25 17 2.2544 -2.5432 -3.7088 26 1 -1.0499 0.0001 -0.0003 27 1 3.0095 -0.4896 0.9032 28 1 3.0089 1.0282 -0.0268 29 1 1.5430 -2.8172 1.4702 30 1 1.7916 2.2692 -3.3918 31 1 0.2858 3.4962 -4.8507 32 1 -0.9721 2.6479 -5.7816 33 1 -2.2193 2.1978 -3.6862 34 1 -0.9614 3.0461 -2.7553 35 1 -2.8896 4.5373 -3.2103 36 1 -1.4207 5.1243 -4.0269 37 1 -2.6787 4.2766 -4.9582 38 1 -1.2166 0.2375 -5.6307 39 1 -0.1060 -1.9119 -5.1746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491708694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:58 Heat of formation + Delta-G solvation = 9.688656 kcal Electronic energy + Delta-G solvation = -26108.368440 eV Core-core repulsion = 22364.070403 eV Total energy + Delta-G solvation = -3744.298037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.04902 -36.39222 -36.17399 -35.62588 -34.72434 -34.37459 -32.05950 -31.16074 -30.76193 -30.66304 -26.62702 -26.21450 -23.89029 -22.78631 -22.13815 -20.80894 -18.53559 -17.96784 -17.26771 -16.66300 -16.40927 -15.72979 -15.52218 -14.72527 -14.56989 -14.26877 -14.18688 -13.69245 -13.51359 -13.34485 -13.29746 -12.76942 -12.40994 -12.25651 -12.13845 -11.91744 -11.66173 -11.44156 -11.36708 -11.09579 -10.90791 -10.84218 -10.71173 -10.66383 -10.62149 -10.40160 -10.34371 -10.01450 -9.85365 -9.42856 -9.22689 -8.89480 -8.73997 -8.32407 -8.11381 -6.64431 -3.96169 1.28606 1.59084 1.72396 2.72644 3.06245 3.12346 3.17119 3.70225 3.88256 3.97429 4.18290 4.57491 4.65083 4.81930 4.89667 5.04471 5.09636 5.17689 5.30531 5.46677 5.47515 5.57121 5.63510 5.76677 5.80417 5.90939 5.97952 6.04214 6.16329 6.26380 6.28539 6.31133 6.44016 6.57619 6.70647 6.74289 6.98537 7.12192 7.16911 7.22116 8.14015 8.50612 8.91185 8.96053 10.25404 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.005091 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.986028 B = 5499.095628 C = 5870.530357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.109 4.109 3 C 0.235 3.765 4 N -0.784 5.784 5 C -0.218 4.218 6 H 0.128 0.872 7 C 0.028 3.972 8 N -0.807 5.807 9 Si 0.925 3.075 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.263 1.263 13 S 2.502 3.498 14 O -1.002 7.002 15 O -0.973 6.973 16 C -0.646 4.646 17 C -0.023 4.023 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.080 4.080 23 C -0.138 4.138 24 C 0.052 3.948 25 Cl -0.038 7.038 26 H 0.194 0.806 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.277 0.723 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.124 0.876 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 4.169 -4.563 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.112 4.112 3 C 0.110 3.890 4 N -0.605 5.605 5 C -0.368 4.368 6 H 0.145 0.855 7 C -0.186 4.186 8 N -0.446 5.446 9 Si 0.750 3.250 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.187 1.187 13 S 2.600 3.400 14 O -0.991 6.991 15 O -0.962 6.962 16 C -0.721 4.721 17 C -0.042 4.042 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.159 4.159 21 C -0.208 4.208 22 C -0.098 4.098 23 C -0.157 4.157 24 C 0.024 3.976 25 Cl -0.008 7.008 26 H 0.211 0.789 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.943 4.645 -4.878 8.983 hybrid contribution -1.133 -1.184 -0.068 1.640 sum -7.076 3.460 -4.947 9.302 Atomic orbital electron populations 1.24122 0.95215 1.06662 1.02487 1.23309 0.94483 0.95034 0.98380 1.18465 0.83976 0.95665 0.90876 1.55611 1.70735 1.16014 1.18098 1.20408 1.27742 0.83259 1.05435 0.85484 1.25650 0.95138 0.99898 0.97902 1.70220 1.19765 1.38224 1.16429 0.85900 0.79109 0.80285 0.79696 1.19454 1.20538 1.18689 1.13349 0.79052 0.73977 0.73599 1.93305 1.85943 1.37749 1.82121 1.93380 1.61904 1.68512 1.72449 1.32399 1.28190 0.95943 1.15614 1.20727 0.93120 0.96604 0.93778 1.19996 0.96373 0.95204 0.99637 1.20590 0.97948 0.93968 0.98852 1.21536 0.98007 0.97349 0.98996 1.21782 1.00387 0.97388 1.01279 1.20967 0.98723 0.91644 0.98502 1.21048 0.95459 0.98578 1.00604 1.20490 0.93459 0.87726 0.95952 1.98441 1.78997 1.30355 1.93044 0.78897 0.86773 0.90011 0.91152 0.84647 0.90962 0.91279 0.91930 0.91406 0.92745 0.92680 0.92956 0.85814 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.49 19.24 29.55 0.57 -4.92 16 2 C -0.11 -2.42 11.15 -37.12 -0.41 -2.83 16 3 C 0.24 5.18 5.45 -6.83 -0.04 5.14 16 4 N -0.78 -18.42 2.88 -62.78 -0.18 -18.60 16 5 C -0.22 -5.17 7.28 -15.06 -0.11 -5.28 16 6 H 0.13 3.07 5.54 -52.49 -0.29 2.78 16 7 C 0.03 0.63 4.91 -17.43 -0.09 0.55 16 8 N -0.81 -18.51 8.95 55.49 0.50 -18.02 16 9 Si 0.93 18.08 29.62 -169.99 -5.03 13.05 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 13 S 2.50 59.67 5.18 -107.50 -0.56 59.11 16 14 O -1.00 -24.68 15.54 -57.17 -0.89 -25.57 16 15 O -0.97 -25.06 15.31 -57.17 -0.88 -25.93 16 16 C -0.65 -14.02 5.91 -39.55 -0.23 -14.25 16 17 C -0.02 -0.44 9.20 -39.59 -0.36 -0.81 16 18 C -0.11 -1.79 5.13 -104.62 -0.54 -2.33 16 19 C -0.08 -0.95 5.34 -27.88 -0.15 -1.10 16 20 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 21 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 22 C -0.08 -1.23 9.70 -39.59 -0.38 -1.61 16 23 C -0.14 -2.39 9.83 -39.55 -0.39 -2.77 16 24 C 0.05 1.07 6.30 -39.50 -0.25 0.82 16 25 Cl -0.04 -0.80 22.77 -51.86 -1.18 -1.98 16 26 H 0.19 3.35 7.80 -54.10 -0.42 2.93 16 27 H 0.11 2.48 6.53 -51.93 -0.34 2.14 16 28 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 29 H 0.28 6.03 8.31 -40.82 -0.34 5.70 16 30 H 0.14 2.54 7.33 -52.48 -0.38 2.16 16 31 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -28.18 352.30 -9.82 -37.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.73 Total: 6.66 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.17 Total: -32.03 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.32 Total: -36.62 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.76 Total: -51.50 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 59.67 SS G_CDS: -0.56 Total: 59.11 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.18 Total: -1.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.18 -9.82 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.680 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds