Wall clock time and date at job start Sat Apr 11 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47198 * 58.49912 * 3 2 1 5 5 C 1.36938 * 120.00524 * 272.97245 * 4 3 2 6 6 H 1.08001 * 120.00077 * 188.88698 * 5 4 3 7 7 C 1.38812 * 119.99755 * 8.88084 * 5 4 3 8 8 N 1.31615 * 120.00136 * 24.38700 * 7 5 4 9 9 Si 1.86799 * 119.99994 * 204.39154 * 7 5 4 10 10 H 1.48497 * 109.47427 * 89.99722 * 9 7 5 11 11 H 1.48501 * 109.47204 * 210.00155 * 9 7 5 12 12 H 1.48504 * 109.47082 * 329.99884 * 9 7 5 13 13 S 1.65610 * 119.99807 * 92.96950 * 4 3 2 14 14 O 1.42091 * 106.39862 * 23.53931 * 13 4 3 15 15 O 1.42101 * 106.39843 * 156.45881 * 13 4 3 16 16 C 1.76200 * 107.21582 * 269.99831 * 13 4 3 17 17 C 1.38234 * 120.00311 * 114.72726 * 16 13 4 18 18 C 1.38219 * 120.01209 * 179.79197 * 17 16 13 19 19 C 1.50704 * 119.98660 * 180.20806 * 18 17 16 20 20 C 1.52996 * 109.47122 * 270.24981 * 19 18 17 21 21 C 1.53000 * 109.47246 * 179.97438 * 20 19 18 22 22 C 1.38261 * 120.02658 * 0.45876 * 18 17 16 23 23 C 1.38188 * 120.01360 * 359.79179 * 22 18 17 24 24 C 1.38328 * 120.00857 * 294.99884 * 16 13 4 25 25 Cl 1.73595 * 120.01370 * 359.97438 * 24 16 13 26 26 H 4.40640 * 5.51359 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.46591 * 298.50116 * 3 2 1 28 28 H 1.09002 * 109.46945 * 178.50360 * 3 2 1 29 29 H 0.96998 * 120.00306 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.99613 * 359.97438 * 17 16 13 31 31 H 1.08997 * 109.47207 * 30.24925 * 19 18 17 32 32 H 1.09003 * 109.47114 * 150.25229 * 19 18 17 33 33 H 1.09003 * 109.47431 * 299.99946 * 20 19 18 34 34 H 1.09003 * 109.47439 * 60.00019 * 20 19 18 35 35 H 1.09006 * 109.47237 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.47175 * 300.00000 * 21 20 19 37 37 H 1.09003 * 109.47022 * 60.00228 * 21 20 19 38 38 H 1.08000 * 119.99354 * 179.77525 * 22 18 17 39 39 H 1.08000 * 120.01241 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7208 -1.1776 5 6 3.3056 -2.0785 -1.1268 6 1 3.7984 -2.5915 -1.9394 7 6 2.8456 -2.7953 -0.0307 8 7 1.8643 -2.3164 0.7041 9 14 3.6194 -4.4397 0.4015 10 1 4.7550 -4.2227 1.3334 11 1 2.6052 -5.3086 1.0509 12 1 4.1131 -5.0950 -0.8362 13 16 3.4804 0.1057 -2.5705 14 8 3.7459 1.4474 -2.1854 15 8 4.4075 -0.6940 -3.2918 16 6 2.0047 0.1468 -3.5324 17 6 1.3773 1.3524 -3.7847 18 6 0.2221 1.3854 -4.5428 19 6 -0.4588 2.7006 -4.8214 20 6 -1.4746 2.9933 -3.7155 21 6 -2.1655 4.3290 -3.9980 22 6 -0.3119 0.2115 -5.0414 23 6 0.3114 -0.9949 -4.7855 24 6 1.4706 -1.0280 -4.0305 25 17 2.2544 -2.5432 -3.7088 26 1 -1.0499 0.0001 -0.0003 27 1 3.0095 -0.4896 0.9032 28 1 3.0089 1.0282 -0.0268 29 1 1.5430 -2.8172 1.4702 30 1 1.7916 2.2692 -3.3918 31 1 0.2858 3.4962 -4.8507 32 1 -0.9721 2.6479 -5.7816 33 1 -2.2193 2.1978 -3.6862 34 1 -0.9614 3.0461 -2.7553 35 1 -2.8896 4.5373 -3.2103 36 1 -1.4207 5.1243 -4.0269 37 1 -2.6787 4.2766 -4.9582 38 1 -1.2166 0.2375 -5.6307 39 1 -0.1060 -1.9119 -5.1746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491708694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:57 Heat of formation + Delta-G solvation = -4.961710 kcal Electronic energy + Delta-G solvation = -26109.003727 eV Core-core repulsion = 22364.070403 eV Total energy + Delta-G solvation = -3744.933325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.40066 -38.12045 -37.87824 -37.32494 -36.30018 -35.81031 -33.78974 -32.88093 -32.17737 -31.83794 -28.36367 -27.28100 -25.64954 -24.21973 -23.26796 -21.93992 -20.30166 -19.67153 -18.87039 -18.41056 -18.07692 -17.10264 -17.01420 -16.33850 -16.12362 -15.59570 -15.43952 -15.13158 -14.99728 -14.86323 -14.70997 -14.18461 -13.97366 -13.65054 -13.46937 -13.31967 -13.04798 -12.84451 -12.70282 -12.64829 -12.57952 -12.44897 -12.32200 -12.04973 -12.00706 -11.80651 -11.69684 -11.59562 -11.49834 -11.06488 -10.91488 -10.53816 -10.22875 -10.05826 -9.52449 -8.37571 -5.76157 -0.23436 0.01569 0.19235 1.20182 1.48806 1.54004 1.61530 2.04592 2.32945 2.44677 2.49999 2.83827 2.90201 3.24506 3.64562 3.76636 3.94427 4.01924 4.07639 4.16212 4.23869 4.38485 4.45863 4.57279 4.58210 4.74712 4.87413 4.91333 4.95406 5.00608 5.08955 5.09767 5.22312 5.24138 5.27663 5.42230 5.46523 5.49921 5.50739 5.83906 6.36309 6.72416 7.17858 7.25506 8.52249 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.005091 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.986028 B = 5499.095628 C = 5870.530357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.143 4.143 3 C 0.236 3.764 4 N -0.791 5.791 5 C -0.234 4.234 6 H 0.117 0.883 7 C 0.005 3.995 8 N -0.819 5.819 9 Si 0.976 3.024 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.267 1.267 13 S 2.503 3.497 14 O -1.022 7.022 15 O -1.002 7.002 16 C -0.672 4.672 17 C -0.043 4.043 18 C -0.102 4.102 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.147 4.147 22 C -0.066 4.066 23 C -0.137 4.137 24 C 0.025 3.975 25 Cl -0.055 7.055 26 H 0.225 0.775 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.282 0.718 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 4.277 -5.533 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.611 5.611 5 C -0.385 4.385 6 H 0.135 0.865 7 C -0.208 4.208 8 N -0.458 5.458 9 Si 0.799 3.201 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.191 1.191 13 S 2.605 3.395 14 O -1.011 7.011 15 O -0.992 6.992 16 C -0.752 4.752 17 C -0.062 4.062 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.158 4.158 21 C -0.204 4.204 22 C -0.084 4.084 23 C -0.156 4.156 24 C -0.003 4.003 25 Cl -0.026 7.026 26 H 0.241 0.759 27 H 0.130 0.870 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.189 0.811 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.694 4.770 -5.819 11.497 hybrid contribution -0.401 -1.136 0.161 1.215 sum -9.095 3.634 -5.658 11.311 Atomic orbital electron populations 1.24860 0.96048 1.05232 1.01052 1.23491 0.94950 0.96367 0.99719 1.18446 0.84558 0.95593 0.90310 1.55550 1.71448 1.16022 1.18106 1.20442 1.28622 0.83544 1.05888 0.86549 1.26232 0.95160 1.02148 0.97272 1.70280 1.20017 1.38998 1.16473 0.85152 0.78603 0.77123 0.79241 1.18811 1.19791 1.19103 1.13131 0.79229 0.73313 0.73783 1.93255 1.86630 1.38658 1.82603 1.93323 1.63607 1.69045 1.73241 1.32002 1.28064 0.97578 1.17560 1.20851 0.94730 0.95497 0.95128 1.20420 0.94856 0.97495 0.97511 1.20702 0.98136 0.91828 1.00515 1.21513 0.97761 0.98874 0.97612 1.21751 1.00417 0.95935 1.02342 1.21517 0.99423 0.90219 0.97256 1.21448 0.94111 1.00702 0.99344 1.20727 0.95034 0.86732 0.97783 1.98423 1.79624 1.31170 1.93364 0.75878 0.87019 0.89795 0.90744 0.85376 0.90791 0.88234 0.91512 0.93633 0.92239 0.92617 0.91345 0.81052 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.20 19.24 74.32 1.43 -8.77 16 2 C -0.14 -6.34 11.15 31.12 0.35 -5.99 16 3 C 0.24 10.70 5.45 84.58 0.46 11.16 16 4 N -0.79 -38.41 2.88 -352.53 -1.02 -39.42 16 5 C -0.23 -11.39 7.28 84.03 0.61 -10.78 16 6 H 0.12 5.85 5.54 -2.91 -0.02 5.83 16 7 C 0.00 0.21 4.91 84.86 0.42 0.62 16 8 N -0.82 -37.46 8.95 21.65 0.19 -37.27 16 9 Si 0.98 36.84 29.62 68.60 2.03 38.87 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 12 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 13 S 2.50 124.25 5.18 -56.49 -0.29 123.96 16 14 O -1.02 -52.62 15.54 -128.00 -1.99 -54.61 16 15 O -1.00 -54.03 15.31 -128.00 -1.96 -55.99 16 16 C -0.67 -29.66 5.91 22.29 0.13 -29.52 16 17 C -0.04 -1.64 9.20 22.26 0.20 -1.44 16 18 C -0.10 -3.02 5.13 -19.86 -0.10 -3.13 16 19 C -0.07 -1.60 5.34 29.85 0.16 -1.44 16 20 C -0.12 -2.46 5.92 30.59 0.18 -2.28 16 21 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 22 C -0.07 -1.78 9.70 22.26 0.22 -1.56 16 23 C -0.14 -4.42 9.83 22.29 0.22 -4.20 16 24 C 0.03 1.04 6.30 22.32 0.14 1.18 16 25 Cl -0.06 -2.37 22.77 -2.72 -0.06 -2.43 16 26 H 0.22 7.21 7.80 -4.42 -0.03 7.17 16 27 H 0.11 5.02 6.53 -2.38 -0.02 5.00 16 28 H 0.08 3.65 6.95 -2.39 -0.02 3.64 16 29 H 0.28 12.08 8.31 -92.71 -0.77 11.31 16 30 H 0.13 4.96 7.33 -2.91 -0.02 4.94 16 31 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 32 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -62.37 352.30 3.10 -59.27 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.06 Total: 25.38 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 5.13 Total: -57.76 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -0.82 Total: -76.69 kcal Atomic # 8 Polarization: -106.65 SS G_CDS: -3.95 Total: -110.59 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 124.25 SS G_CDS: -0.29 Total: 123.96 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.06 Total: -2.43 kcal Total: -62.37 3.10 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.303 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds