Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39773 * 125.83863 * 2 1 4 4 C 1.36172 * 107.81440 * 180.16827 * 3 2 1 5 5 N 1.39209 * 126.22206 * 179.85045 * 4 3 2 6 6 S 1.65602 * 119.99691 * 359.40776 * 5 4 3 7 7 O 1.42104 * 106.40175 * 178.81851 * 6 5 4 8 8 O 1.42095 * 106.40656 * 311.73903 * 6 5 4 9 9 C 1.76203 * 107.21635 * 65.28037 * 6 5 4 10 10 S 1.75879 * 125.20439 * 269.68817 * 9 6 5 11 11 C 1.75879 * 90.97211 * 179.97438 * 10 9 6 12 12 C 1.33389 * 109.59512 * 0.31237 * 11 10 9 13 13 C 1.33389 * 125.19928 * 90.00084 * 9 6 5 14 14 C 1.50699 * 122.54645 * 359.97438 * 13 9 6 15 15 N 1.35245 * 107.55776 * 359.58331 * 4 3 2 16 16 C 1.46495 * 126.04271 * 180.26392 * 15 4 3 17 17 C 1.50703 * 109.47205 * 90.00104 * 16 15 4 18 18 H 1.07997 * 119.99862 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31506 * 119.99936 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99915 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47459 * 89.99777 * 21 19 17 23 23 H 1.48504 * 109.47228 * 209.99431 * 21 19 17 24 24 H 1.48502 * 109.47222 * 329.99475 * 21 19 17 25 25 N 1.30839 * 125.83820 * 179.70281 * 2 1 3 26 26 H 1.09006 * 109.47085 * 270.27570 * 1 2 3 27 27 H 1.09007 * 109.47116 * 30.27173 * 1 2 3 28 28 H 1.08995 * 109.47374 * 150.27311 * 1 2 3 29 29 H 1.08009 * 126.09589 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00306 * 179.69290 * 5 4 3 31 31 H 1.08000 * 125.20506 * 180.11551 * 11 10 9 32 32 H 1.07998 * 122.54056 * 179.77863 * 12 11 10 33 33 H 1.08995 * 109.47074 * 90.00161 * 14 13 9 34 34 H 1.09000 * 109.47324 * 210.00217 * 14 13 9 35 35 H 1.09005 * 109.47028 * 330.00508 * 14 13 9 36 36 H 1.09006 * 109.47205 * 209.99863 * 16 15 4 37 37 H 1.08997 * 109.47478 * 329.99924 * 16 15 4 38 38 H 0.96997 * 120.00201 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6202 0.7118 -0.0038 5 7 4.7500 1.5252 -0.0080 6 16 4.5838 3.1728 -0.0236 7 8 5.8996 3.7090 0.0034 8 8 3.6436 3.4717 -1.0462 9 6 3.8269 3.6350 1.4990 10 16 2.0945 3.7720 1.7695 11 6 2.3626 4.2415 3.4431 12 6 3.6723 4.2753 3.6939 13 6 4.4804 3.9402 2.6210 14 6 5.9844 3.9225 2.7137 15 7 3.6093 -0.6406 0.0033 16 6 4.7868 -1.5122 0.0078 17 6 5.1906 -1.8036 1.4302 18 1 4.6262 -1.3821 2.2488 19 6 6.2798 -2.6092 1.6863 20 7 6.6325 -2.8631 2.9275 21 14 7.2555 -3.3387 0.2702 22 1 8.3474 -2.4070 -0.1106 23 1 7.8379 -4.6392 0.6885 24 1 6.3568 -3.5501 -0.8930 25 7 2.2730 -1.0607 0.0055 26 1 -0.3633 0.0049 1.0277 27 1 -0.3634 0.8876 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.9904 2.1599 0.0004 30 1 5.6344 1.1269 -0.0060 31 1 1.5858 4.4708 4.1575 32 1 4.0719 4.5432 4.6608 33 1 6.3763 4.9049 2.4506 34 1 6.2828 3.6730 3.7319 35 1 6.3821 3.1765 2.0254 36 1 4.5493 -2.4464 -0.5011 37 1 5.6083 -1.0157 -0.5086 38 1 7.3990 -3.4295 3.1077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525227042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = 16.332052 kcal Electronic energy + Delta-G solvation = -25797.790274 eV Core-core repulsion = 22088.116774 eV Total energy + Delta-G solvation = -3709.673500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28975 -39.49770 -38.50821 -37.28836 -36.62445 -35.72088 -34.01945 -32.14101 -31.10451 -29.75790 -28.91823 -28.01254 -24.43579 -24.28926 -22.51643 -21.72093 -21.02257 -20.06322 -19.27672 -19.15100 -18.56521 -18.42337 -16.84466 -16.71782 -16.57407 -16.28316 -15.86795 -15.63652 -15.19128 -14.91252 -14.50103 -14.37681 -14.24727 -13.93884 -13.77417 -13.65833 -13.59084 -13.48085 -13.27098 -13.26554 -13.11730 -13.06108 -12.89295 -12.63925 -12.51855 -12.29702 -11.99714 -11.84339 -11.82478 -11.42510 -10.92756 -10.36042 -9.74225 -9.46949 -9.18190 -8.43763 -6.55011 -1.07980 -0.51090 0.39275 0.77727 0.98935 1.26399 1.31560 1.34664 1.43353 1.51231 1.80365 1.92109 2.22707 2.38663 2.87781 3.17493 3.52797 3.69542 3.78546 4.07830 4.21522 4.32912 4.42999 4.50177 4.52014 4.64572 4.68068 4.73932 4.87223 4.94231 4.99780 5.11397 5.15176 5.15782 5.19419 5.35024 5.42832 5.83006 5.90826 6.26180 6.48653 6.87797 7.09011 8.72144 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.005088 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.990188 B = 5502.061271 C = 6369.893129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.084 3.916 3 C -0.331 4.331 4 C 0.330 3.670 5 N -1.029 6.029 6 S 2.739 3.261 7 O -0.948 6.948 8 O -0.956 6.956 9 C -0.835 4.835 10 S 0.216 5.784 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.050 3.950 14 C -0.134 4.134 15 N -0.359 5.359 16 C 0.233 3.767 17 C -0.551 4.551 18 H 0.030 0.970 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.940 3.060 22 H -0.251 1.251 23 H -0.277 1.277 24 H -0.246 1.246 25 N -0.323 5.323 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.434 0.566 31 H 0.212 0.788 32 H 0.178 0.822 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 15.887 -1.200 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.365 4.365 4 C 0.104 3.896 5 N -0.779 5.779 6 S 2.829 3.171 7 O -0.938 6.938 8 O -0.946 6.946 9 C -1.040 5.040 10 S 0.483 5.517 11 C -0.290 4.290 12 C -0.207 4.207 13 C 0.031 3.969 14 C -0.192 4.192 15 N -0.143 5.143 16 C 0.113 3.887 17 C -0.589 4.589 18 H 0.049 0.951 19 C -0.173 4.173 20 N -0.568 5.568 21 Si 0.761 3.239 22 H -0.175 1.175 23 H -0.202 1.202 24 H -0.170 1.170 25 N -0.148 5.148 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.272 0.728 31 H 0.229 0.771 32 H 0.195 0.805 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.594 14.853 -2.699 17.371 hybrid contribution 2.267 0.008 1.492 2.714 sum -6.327 14.861 -1.206 16.197 Atomic orbital electron populations 1.20349 0.83373 1.04657 1.04236 1.22697 0.98749 0.89063 0.97662 1.20955 0.88569 1.00919 1.26036 1.17772 0.87849 0.83708 1.00291 1.53139 1.12711 1.25319 1.86710 1.00534 0.73210 0.70177 0.73192 1.93605 1.37356 1.75480 1.87403 1.93588 1.64218 1.82191 1.54590 1.35034 1.10469 1.33133 1.25333 1.84050 0.97877 1.63235 1.06511 1.26778 1.01387 1.00787 1.00096 1.20578 0.92637 1.06316 1.01135 1.19110 0.98458 0.88896 0.90405 1.21158 0.88319 1.04875 1.04880 1.48785 1.06360 1.02639 1.56544 1.19808 0.80634 0.90754 0.97485 1.21195 1.14090 1.32700 0.90884 0.95123 1.25732 0.97549 0.95318 0.98740 1.70004 1.27798 1.37860 1.21180 0.85830 0.79671 0.78994 0.79358 1.17529 1.20177 1.16952 1.77354 0.85776 1.23432 1.28214 0.89136 0.88005 0.90239 0.82201 0.72809 0.77140 0.80491 0.87565 0.88296 0.91609 0.92597 0.91994 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.44 71.24 0.74 -0.89 16 2 C 0.08 3.05 7.21 43.08 0.31 3.36 16 3 C -0.33 -12.11 8.72 22.16 0.19 -11.92 16 4 C 0.33 13.30 7.58 131.43 1.00 14.29 16 5 N -1.03 -36.47 5.87 -55.50 -0.33 -36.80 16 6 S 2.74 88.00 5.13 -56.49 -0.29 87.71 16 7 O -0.95 -31.14 15.23 -128.00 -1.95 -33.09 16 8 O -0.96 -33.40 16.09 -128.00 -2.06 -35.46 16 9 C -0.83 -24.09 6.15 66.72 0.41 -23.68 16 10 S 0.22 5.16 20.35 -56.49 -1.15 4.01 16 11 C -0.15 -2.75 11.23 66.72 0.75 -2.00 16 12 C -0.18 -3.54 9.98 21.22 0.21 -3.33 16 13 C 0.05 1.29 5.80 -20.92 -0.12 1.16 16 14 C -0.13 -3.20 8.98 71.24 0.64 -2.56 16 15 N -0.36 -16.31 3.60 -348.91 -1.26 -17.57 16 16 C 0.23 10.96 5.07 85.63 0.43 11.40 16 17 C -0.55 -30.69 9.94 25.60 0.25 -30.43 16 18 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 19 C 0.03 1.50 5.47 84.66 0.46 1.96 16 20 N -0.93 -55.07 13.96 21.45 0.30 -54.78 16 21 Si 0.94 40.11 27.47 68.60 1.88 41.99 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.25 -9.79 6.54 99.48 0.65 -9.14 16 25 N -0.32 -14.24 12.56 -47.44 -0.60 -14.84 16 26 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.10 1.88 8.14 -2.38 -0.02 1.87 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.16 5.15 4.28 -2.95 -0.01 5.14 16 30 H 0.43 14.51 8.09 -96.74 -0.78 13.73 16 31 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 1.94 8.13 -2.39 -0.02 1.92 16 35 H 0.07 1.81 6.22 -2.38 -0.01 1.80 16 36 H 0.06 2.62 7.20 -2.38 -0.02 2.60 16 37 H 0.06 2.58 6.92 -2.39 -0.02 2.57 16 38 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -74.90 343.49 0.12 -74.77 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.28 Total: 26.67 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 5.29 Total: -42.63 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -1.88 Total: -123.98 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -4.01 Total: -68.55 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.88 Total: 41.99 kcal Atomic # 16 Polarization: 93.17 SS G_CDS: -1.44 Total: 91.73 kcal Total: -74.90 0.12 -74.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525227042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.104 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds