Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35529 * 116.99509 * 2 1 4 4 N 1.32748 * 120.47463 * 0.26773 * 3 2 1 5 5 C 1.32459 * 120.65545 * 180.27372 * 4 3 2 6 6 N 1.38432 * 119.17930 * 179.72024 * 5 4 3 7 7 C 1.46850 * 111.00293 * 179.73309 * 6 5 4 8 8 C 1.53036 * 109.52384 * 185.84038 * 7 6 5 9 9 C 1.53114 * 109.27799 * 300.81924 * 8 7 6 10 10 C 1.50701 * 109.52177 * 177.56146 * 9 8 7 11 11 H 1.07995 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99734 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00120 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99854 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46816 * 59.99953 * 14 12 10 16 16 H 1.48498 * 109.47526 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47226 * 300.00601 * 14 12 10 18 18 C 1.53120 * 109.16161 * 57.65854 * 9 8 7 19 19 C 1.46846 * 111.00027 * 303.94613 * 6 5 4 20 20 N 1.32477 * 121.64059 * 359.44555 * 5 4 3 21 21 C 1.32450 * 120.89503 * 0.27335 * 20 5 4 22 22 C 1.38296 * 119.25618 * 0.02562 * 21 20 5 23 23 Br 1.89099 * 120.75715 * 179.97438 * 22 21 20 24 24 H 1.08993 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46985 * 300.00161 * 1 2 3 26 26 H 1.08998 * 109.47002 * 60.00147 * 1 2 3 27 27 H 1.08995 * 109.45831 * 65.81827 * 7 6 5 28 28 H 1.08998 * 109.45719 * 305.85677 * 7 6 5 29 29 H 1.09004 * 109.50109 * 60.76189 * 8 7 6 30 30 H 1.08997 * 109.49831 * 180.87683 * 8 7 6 31 31 H 1.09002 * 109.52325 * 297.75085 * 9 8 7 32 32 H 0.96997 * 119.99690 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.50493 * 62.28140 * 18 9 8 34 34 H 1.09005 * 109.50270 * 182.40711 * 18 9 8 35 35 H 1.08993 * 109.46639 * 54.14164 * 19 6 5 36 36 H 1.09010 * 109.45973 * 294.17330 * 19 6 5 37 37 H 1.08000 * 120.37220 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 7 1.3304 2.3268 0.0053 5 6 1.9279 3.5090 -0.0001 6 7 1.1537 4.6565 -0.0002 7 6 1.9957 5.8596 -0.0002 8 6 1.1135 7.1014 0.1465 9 6 0.1167 7.1534 -1.0146 10 6 -0.7943 8.3416 -0.8434 11 1 -0.6750 8.9953 0.0078 12 6 -1.7795 8.5946 -1.7743 13 7 -1.9245 7.7988 -2.8112 14 14 -2.9093 10.0670 -1.5617 15 1 -2.1011 11.3128 -1.5469 16 1 -3.8746 10.1172 -2.6890 17 1 -3.6496 9.9420 -0.2805 18 6 -0.7149 5.8677 -1.0210 19 6 0.2204 4.6616 -1.1339 20 7 3.2480 3.6205 0.0000 21 6 4.0213 2.5452 0.0001 22 6 3.4364 1.2920 -0.0004 23 35 4.4999 -0.2716 -0.0010 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5489 5.9156 -0.9377 28 1 2.6971 5.8119 0.8328 29 1 0.5705 7.0526 1.0904 30 1 1.7375 7.9950 0.1308 31 1 0.6587 7.2414 -1.9563 32 1 -2.6178 7.9766 -3.4658 33 1 -1.2866 5.7995 -0.0956 34 1 -1.3972 5.8799 -1.8711 35 1 -0.3677 3.7440 -1.1244 36 1 0.7818 4.7234 -2.0662 37 1 5.0966 2.6459 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543790096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = 28.369364 kcal Electronic energy + Delta-G solvation = -21757.540118 eV Core-core repulsion = 18389.164331 eV Total energy + Delta-G solvation = -3368.375786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45043 -39.16883 -37.85073 -34.37248 -33.38166 -32.48244 -31.20701 -30.05641 -29.10653 -27.58788 -25.96064 -24.16668 -23.45957 -22.03605 -21.68760 -19.03557 -18.49278 -18.11072 -16.55692 -16.42640 -16.07661 -15.29779 -14.97658 -14.83382 -14.57283 -14.02189 -13.93410 -13.40613 -12.92950 -12.65041 -12.45093 -12.18176 -11.83256 -11.62037 -11.53945 -11.20820 -10.97448 -10.88719 -10.63154 -10.60953 -10.37610 -10.29226 -10.15180 -9.65774 -9.46946 -9.23696 -9.01575 -8.82918 -8.36655 -8.13596 -6.03690 -4.09019 0.70531 1.04541 1.45107 2.62901 3.27268 3.30248 3.35096 3.37842 3.60597 3.99171 4.40978 4.58042 4.68428 4.91678 5.11138 5.16886 5.26827 5.45646 5.49901 5.66428 5.80421 5.87804 6.02329 6.18024 6.32918 6.47279 6.62060 6.68678 6.71141 6.82323 6.98033 7.19471 7.29912 7.42792 7.68216 7.91963 8.01652 8.08947 8.39334 8.94074 9.55967 11.02886 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.002692 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.128012 B =10397.684739 C =11003.361250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.289 6.289 3 C 0.415 3.585 4 N -0.579 5.579 5 C 0.551 3.449 6 N -0.450 5.450 7 C 0.072 3.928 8 C -0.111 4.111 9 C 0.045 3.955 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.107 4.107 19 C 0.069 3.931 20 N -0.565 5.565 21 C 0.235 3.765 22 C -0.270 4.270 23 Br -0.023 7.023 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 -17.658 4.682 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.192 6.192 3 C 0.224 3.776 4 N -0.315 5.315 5 C 0.196 3.804 6 N -0.167 5.167 7 C -0.054 4.054 8 C -0.149 4.149 9 C 0.026 3.974 10 C -0.550 4.550 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.145 4.145 19 C -0.055 4.055 20 N -0.290 5.290 21 C 0.066 3.934 22 C -0.357 4.357 23 Br 0.060 6.940 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.696 -17.629 4.931 21.202 hybrid contribution -0.302 0.372 -0.395 0.621 sum 10.394 -17.257 4.536 20.650 Atomic orbital electron populations 1.23034 0.76087 1.03465 1.03413 1.86319 1.23777 1.23096 1.86025 1.19460 0.87733 0.85229 0.85196 1.67780 1.39990 0.97586 1.26130 1.21145 0.85525 0.88937 0.84780 1.58450 1.16866 0.99533 1.41869 1.22209 0.94160 0.87394 1.01661 1.21804 0.97805 0.93768 1.01538 1.18742 0.92518 0.93304 0.92788 1.21128 1.15311 1.10094 1.08435 0.92604 1.24967 0.97407 0.96461 0.95117 1.69839 1.33646 1.37532 1.12140 0.86665 0.80566 0.83212 0.77592 1.20316 1.21358 1.20279 1.21800 0.97775 0.91738 1.03171 1.22508 0.93524 1.02472 0.87044 1.68684 1.05187 1.32374 1.22731 1.22979 1.00613 0.84681 0.85080 1.22323 0.92534 0.95698 1.25149 1.96650 1.66756 1.32460 1.98175 0.88045 0.91569 0.91577 0.93172 0.90584 0.92246 0.92004 0.95663 0.92921 0.93234 0.87966 0.90571 0.94204 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.41 101.05 1.05 1.40 16 2 O -0.29 -3.69 9.93 -18.28 -0.18 -3.87 16 3 C 0.42 5.99 7.52 -16.70 -0.13 5.86 16 4 N -0.58 -9.43 8.60 -13.97 -0.12 -9.55 16 5 C 0.55 9.45 7.17 -322.84 -2.32 7.14 16 6 N -0.45 -8.31 4.72 -175.43 -0.83 -9.13 16 7 C 0.07 1.29 4.63 -3.83 -0.02 1.27 16 8 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 9 C 0.04 1.07 2.16 -91.65 -0.20 0.87 16 10 C -0.51 -13.53 8.56 -34.44 -0.29 -13.82 16 11 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 12 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 13 N -0.89 -24.58 11.37 55.43 0.63 -23.95 16 14 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.11 -2.40 5.12 -26.65 -0.14 -2.53 16 19 C 0.07 1.33 5.33 -3.83 -0.02 1.31 16 20 N -0.57 -8.78 8.67 -13.98 -0.12 -8.90 16 21 C 0.23 2.95 11.07 -17.26 -0.19 2.76 16 22 C -0.27 -3.48 6.28 -39.10 -0.25 -3.73 16 23 Br -0.02 -0.25 33.30 -68.01 -2.26 -2.51 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 2.55 6.18 -51.93 -0.32 2.23 16 35 H 0.08 1.40 7.55 -51.93 -0.39 1.01 16 36 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -28.13 325.02 -10.61 -38.74 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.88 Total: -1.20 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.73 Total: -0.28 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.44 Total: -51.54 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.18 Total: -3.87 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.26 Total: -2.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.13 -10.61 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543790096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.110 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds