Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47292 * 299.99990 * 3 2 1 6 6 H 1.48503 * 109.47295 * 60.00157 * 3 2 1 7 7 C 1.39936 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99872 * 191.30893 * 7 2 1 9 9 C 1.41396 * 120.00212 * 11.30547 * 7 2 1 10 10 C 1.40746 * 120.23619 * 28.55603 * 9 7 2 11 11 C 1.37595 * 119.77113 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.26317 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.75468 * 179.97438 * 12 11 10 14 14 O 1.42105 * 106.40093 * 130.45693 * 13 12 11 15 15 O 1.42093 * 106.40303 * 357.53547 * 13 12 11 16 16 N 1.65602 * 107.21845 * 243.99143 * 13 12 11 17 17 C 1.46505 * 119.99754 * 64.29014 * 16 13 12 18 18 H 1.08996 * 115.56040 * 359.25147 * 17 16 13 19 19 C 1.52996 * 117.49819 * 213.55881 * 17 16 13 20 20 C 1.53001 * 60.00172 * 252.51327 * 19 17 16 21 21 H 1.09000 * 117.50376 * 107.48808 * 20 19 17 22 22 C 1.53005 * 117.50066 * 252.49327 * 20 19 17 23 23 C 1.52999 * 117.49878 * 197.49398 * 22 20 19 24 24 C 1.52997 * 117.50443 * 128.82845 * 22 20 19 25 25 C 1.38733 * 120.48843 * 0.24016 * 12 11 10 26 26 Cl 1.73598 * 119.88947 * 179.74176 * 25 12 11 27 27 C 1.37752 * 120.21858 * 359.47789 * 25 12 11 28 28 H 0.97003 * 119.99764 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.11174 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.86815 * 180.02562 * 11 10 9 31 31 H 0.96999 * 120.00156 * 244.29328 * 16 13 12 32 32 H 1.08997 * 117.50016 * 145.02742 * 19 17 16 33 33 H 1.09002 * 117.52214 * 359.97438 * 19 17 16 34 34 H 1.08998 * 115.54670 * 343.15561 * 22 20 19 35 35 H 1.08997 * 117.49781 * 359.97438 * 23 22 20 36 36 H 1.08999 * 117.49913 * 145.01611 * 23 22 20 37 37 H 1.08994 * 117.49989 * 214.98001 * 24 22 20 38 38 H 1.09007 * 117.49361 * 359.97438 * 24 22 20 39 39 H 1.08000 * 120.13426 * 180.23896 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0723 -1.2210 0.1829 9 6 1.3217 -2.4244 -0.2411 10 6 0.1603 -2.4358 -1.0362 11 6 -0.4998 -3.6213 -1.2645 12 6 -0.0256 -4.8022 -0.7145 13 16 -0.8818 -6.3126 -1.0151 14 8 0.0975 -7.2517 -1.4379 15 8 -2.0244 -5.9786 -1.7909 16 7 -1.4488 -6.8534 0.4439 17 6 -2.4485 -6.0721 1.1763 18 1 -2.7586 -5.1415 0.7011 19 6 -2.3837 -6.0975 2.7047 20 6 -3.5021 -6.8433 1.9739 21 1 -3.4515 -7.9319 1.9537 22 6 -4.9104 -6.2494 2.0438 23 6 -6.0821 -7.1656 1.6852 24 6 -5.6598 -6.0509 0.7248 25 6 1.1150 -4.8027 0.0753 26 17 1.6913 -6.2894 0.7617 27 6 1.7948 -3.6282 0.3121 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2115 -1.5171 -1.4655 30 1 -1.3909 -3.6319 -1.8747 31 1 -1.1190 -7.6874 0.8135 32 1 -2.6513 -5.1836 3.2351 33 1 -1.5978 -6.6957 3.1657 34 1 -5.0709 -5.5114 2.8298 35 1 -5.8496 -8.1913 1.3991 36 1 -7.0135 -7.0301 2.2349 37 1 -6.3135 -5.1826 0.6431 38 1 -5.1492 -6.3430 -0.1930 39 1 2.6847 -3.6308 0.9240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556294414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = -24.373914 kcal Electronic energy + Delta-G solvation = -25077.397352 eV Core-core repulsion = 21331.622251 eV Total energy + Delta-G solvation = -3745.775101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.71310 -37.89521 -36.53678 -35.82494 -35.68717 -35.15484 -34.03422 -31.68492 -30.46614 -29.38440 -26.03345 -23.77167 -22.48986 -21.87941 -21.68862 -21.40274 -20.02689 -18.96030 -17.84427 -17.27844 -16.63368 -16.12299 -15.66498 -15.55212 -14.82726 -14.57089 -14.38149 -13.79708 -13.44295 -13.11105 -12.85877 -12.73862 -12.48180 -12.31099 -11.97753 -11.71482 -11.57238 -11.52624 -11.50054 -11.42262 -11.35508 -11.30213 -11.15579 -10.77368 -10.68688 -10.53136 -10.40907 -10.33739 -10.05740 -9.75599 -9.66170 -9.59447 -8.62689 -8.13137 -7.72543 -7.22508 -4.96896 1.16201 2.01153 2.59005 2.81756 2.82268 2.86406 2.90868 3.53841 3.59470 3.65814 4.03365 4.11724 4.44469 4.64690 4.82682 4.90904 5.06424 5.12509 5.16168 5.26535 5.33671 5.42391 5.50274 5.63351 5.89853 5.92197 5.94765 6.11302 6.20090 6.26688 6.40537 6.52033 6.53705 6.65278 6.73653 6.95524 7.10802 7.27218 7.38520 7.56540 7.73460 8.14436 8.33694 8.40350 9.67977 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.003964 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.877086 B = 7062.369534 C = 8167.892331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.428 4.428 8 H 0.091 0.909 9 C 0.145 3.855 10 C -0.174 4.174 11 C -0.011 4.011 12 C -0.784 4.784 13 S 2.698 3.302 14 O -0.970 6.970 15 O -0.980 6.980 16 N -1.091 6.091 17 C 0.110 3.890 18 H 0.137 0.863 19 C -0.179 4.179 20 C -0.135 4.135 21 H 0.106 0.894 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.177 4.177 25 C 0.093 3.907 26 Cl -0.102 7.102 27 C -0.221 4.221 28 H 0.290 0.710 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.411 0.589 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -5.689 4.867 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.152 4.152 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.455 4.455 8 H 0.109 0.891 9 C 0.141 3.859 10 C -0.194 4.194 11 C -0.031 4.031 12 C -0.879 4.879 13 S 2.794 3.206 14 O -0.960 6.960 15 O -0.970 6.970 16 N -0.844 5.844 17 C 0.001 3.999 18 H 0.154 0.846 19 C -0.219 4.219 20 C -0.156 4.156 21 H 0.124 0.876 22 C -0.142 4.142 23 C -0.216 4.216 24 C -0.214 4.214 25 C 0.065 3.935 26 Cl -0.074 7.074 27 C -0.242 4.242 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.244 0.756 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.659 -5.943 4.021 9.790 hybrid contribution 0.799 0.860 0.887 1.472 sum -5.860 -5.083 4.908 9.180 Atomic orbital electron populations 1.69783 1.07820 1.30457 1.30937 1.26138 0.95042 1.02185 0.91873 0.86012 0.80869 0.79535 0.79093 1.17943 1.19172 1.19409 1.19978 0.96760 0.90244 1.38499 0.89118 1.17751 0.90625 0.91416 0.86121 1.21454 0.99038 0.96866 1.02048 1.20317 0.96974 0.90988 0.94857 1.29128 1.14347 1.18826 1.25607 1.01255 0.73237 0.74051 0.72046 1.93556 1.60791 1.62177 1.79472 1.93489 1.50994 1.85243 1.67301 1.55295 1.53856 1.33623 1.41601 1.21307 0.91557 0.96216 0.90847 0.84574 1.23495 1.00268 1.02736 0.95355 1.22281 0.89220 0.98376 1.05717 0.87564 1.21732 0.90566 1.02322 0.99564 1.22968 0.98386 0.96178 1.04089 1.23055 1.03359 1.00373 0.94604 1.19959 0.93802 0.85532 0.94252 1.98320 1.88987 1.35717 1.84356 1.21001 1.03812 0.91433 1.07953 0.89837 0.85255 0.86510 0.75616 0.87988 0.88336 0.87565 0.88950 0.89075 0.88816 0.87977 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.30 10.86 55.55 0.60 -16.70 16 2 C 0.07 1.52 5.24 -17.34 -0.09 1.43 16 3 Si 0.92 16.28 29.57 -169.99 -5.03 11.25 16 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 5 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 6 H -0.27 -4.70 7.11 56.52 0.40 -4.29 16 7 C -0.43 -9.96 9.06 -37.75 -0.34 -10.30 16 8 H 0.09 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.15 3.49 5.55 -106.83 -0.59 2.90 16 10 C -0.17 -4.12 8.66 -38.87 -0.34 -4.46 16 11 C -0.01 -0.24 9.52 -39.67 -0.38 -0.62 16 12 C -0.78 -16.94 5.89 -39.25 -0.23 -17.17 16 13 S 2.70 52.37 5.02 -107.50 -0.54 51.83 16 14 O -0.97 -20.66 16.56 -57.17 -0.95 -21.61 16 15 O -0.98 -20.61 16.72 -57.17 -0.96 -21.56 16 16 N -1.09 -16.81 5.71 -4.89 -0.03 -16.84 16 17 C 0.11 1.57 6.12 -67.93 -0.42 1.15 16 18 H 0.14 2.09 8.11 -51.93 -0.42 1.67 16 19 C -0.18 -2.17 10.18 -26.73 -0.27 -2.45 16 20 C -0.14 -1.59 5.79 -90.62 -0.52 -2.11 16 21 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.12 -1.35 5.87 -90.62 -0.53 -1.88 16 23 C -0.18 -1.76 10.26 -26.69 -0.27 -2.03 16 24 C -0.18 -2.00 10.18 -26.69 -0.27 -2.27 16 25 C 0.09 2.02 6.29 -39.58 -0.25 1.77 16 26 Cl -0.10 -1.95 26.39 -51.86 -1.37 -3.31 16 27 C -0.22 -5.03 9.57 -38.84 -0.37 -5.40 16 28 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 29 H 0.13 3.09 6.22 -52.49 -0.33 2.77 16 30 H 0.12 2.43 7.31 -52.48 -0.38 2.05 16 31 H 0.41 5.45 8.96 -34.47 -0.31 5.15 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -27.33 360.30 -12.51 -39.84 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.79 Total: 13.14 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: -4.88 Total: -41.46 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.58 Total: -33.54 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.90 Total: -43.17 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.54 Total: 51.83 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.37 Total: -3.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.33 -12.51 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556294414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.465 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds