Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47292 * 299.99990 * 3 2 1 6 6 H 1.48503 * 109.47295 * 60.00157 * 3 2 1 7 7 C 1.39936 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99872 * 191.30893 * 7 2 1 9 9 C 1.41396 * 120.00212 * 11.30547 * 7 2 1 10 10 C 1.40746 * 120.23619 * 28.55603 * 9 7 2 11 11 C 1.37595 * 119.77113 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.26317 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.75468 * 179.97438 * 12 11 10 14 14 O 1.42105 * 106.40093 * 130.45693 * 13 12 11 15 15 O 1.42093 * 106.40303 * 357.53547 * 13 12 11 16 16 N 1.65602 * 107.21845 * 243.99143 * 13 12 11 17 17 C 1.46505 * 119.99754 * 64.29014 * 16 13 12 18 18 H 1.08996 * 115.56040 * 359.25147 * 17 16 13 19 19 C 1.52996 * 117.49819 * 213.55881 * 17 16 13 20 20 C 1.53001 * 60.00172 * 252.51327 * 19 17 16 21 21 H 1.09000 * 117.50376 * 107.48808 * 20 19 17 22 22 C 1.53005 * 117.50066 * 252.49327 * 20 19 17 23 23 C 1.52999 * 117.49878 * 197.49398 * 22 20 19 24 24 C 1.52997 * 117.50443 * 128.82845 * 22 20 19 25 25 C 1.38733 * 120.48843 * 0.24016 * 12 11 10 26 26 Cl 1.73598 * 119.88947 * 179.74176 * 25 12 11 27 27 C 1.37752 * 120.21858 * 359.47789 * 25 12 11 28 28 H 0.97003 * 119.99764 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.11174 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.86815 * 180.02562 * 11 10 9 31 31 H 0.96999 * 120.00156 * 244.29328 * 16 13 12 32 32 H 1.08997 * 117.50016 * 145.02742 * 19 17 16 33 33 H 1.09002 * 117.52214 * 359.97438 * 19 17 16 34 34 H 1.08998 * 115.54670 * 343.15561 * 22 20 19 35 35 H 1.08997 * 117.49781 * 359.97438 * 23 22 20 36 36 H 1.08999 * 117.49913 * 145.01611 * 23 22 20 37 37 H 1.08994 * 117.49989 * 214.98001 * 24 22 20 38 38 H 1.09007 * 117.49361 * 359.97438 * 24 22 20 39 39 H 1.08000 * 120.13426 * 180.23896 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0723 -1.2210 0.1829 9 6 1.3217 -2.4244 -0.2411 10 6 0.1603 -2.4358 -1.0362 11 6 -0.4998 -3.6213 -1.2645 12 6 -0.0256 -4.8022 -0.7145 13 16 -0.8818 -6.3126 -1.0151 14 8 0.0975 -7.2517 -1.4379 15 8 -2.0244 -5.9786 -1.7909 16 7 -1.4488 -6.8534 0.4439 17 6 -2.4485 -6.0721 1.1763 18 1 -2.7586 -5.1415 0.7011 19 6 -2.3837 -6.0975 2.7047 20 6 -3.5021 -6.8433 1.9739 21 1 -3.4515 -7.9319 1.9537 22 6 -4.9104 -6.2494 2.0438 23 6 -6.0821 -7.1656 1.6852 24 6 -5.6598 -6.0509 0.7248 25 6 1.1150 -4.8027 0.0753 26 17 1.6913 -6.2894 0.7617 27 6 1.7948 -3.6282 0.3121 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2115 -1.5171 -1.4655 30 1 -1.3909 -3.6319 -1.8747 31 1 -1.1190 -7.6874 0.8135 32 1 -2.6513 -5.1836 3.2351 33 1 -1.5978 -6.6957 3.1657 34 1 -5.0709 -5.5114 2.8298 35 1 -5.8496 -8.1913 1.3991 36 1 -7.0135 -7.0301 2.2349 37 1 -6.3135 -5.1826 0.6431 38 1 -5.1492 -6.3430 -0.1930 39 1 2.6847 -3.6308 0.9240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556294414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -38.800812 kcal Electronic energy + Delta-G solvation = -25078.022949 eV Core-core repulsion = 21331.622251 eV Total energy + Delta-G solvation = -3746.400698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71284 -39.61173 -38.18123 -37.41638 -36.81423 -36.72537 -35.72667 -32.89319 -32.20897 -31.13808 -27.76712 -24.71430 -23.46741 -23.37996 -23.21939 -22.78884 -21.04240 -20.39270 -19.57351 -18.82527 -18.16735 -17.45278 -17.27852 -16.45967 -16.29090 -16.20701 -15.50381 -15.43128 -15.06516 -14.54275 -14.34228 -14.12263 -13.99261 -13.67334 -13.39489 -13.17831 -13.08224 -13.04423 -12.93957 -12.83179 -12.80907 -12.34643 -12.33253 -12.22254 -12.08275 -11.98907 -11.81939 -11.70651 -11.36582 -11.28653 -11.13580 -10.71088 -9.90100 -9.75722 -9.48065 -8.88032 -6.74029 -0.39720 0.29166 0.80993 1.15139 1.38178 1.42106 1.54682 2.11021 2.12254 2.43752 2.66927 2.87435 3.13549 3.35722 3.59452 3.75340 3.88784 3.98052 4.09492 4.18767 4.20525 4.28563 4.47802 4.56621 4.74274 4.77536 4.86164 4.91306 4.96692 5.02567 5.09186 5.21731 5.27088 5.28846 5.33342 5.35633 5.41509 5.58781 5.80597 5.96210 6.11340 6.38156 6.59125 6.63083 8.06016 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.003964 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.877086 B = 7062.369534 C = 8167.892331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.453 4.453 8 H 0.096 0.904 9 C 0.121 3.879 10 C -0.193 4.193 11 C -0.016 4.016 12 C -0.795 4.795 13 S 2.721 3.279 14 O -0.988 6.988 15 O -0.997 6.997 16 N -1.077 6.077 17 C 0.076 3.924 18 H 0.120 0.880 19 C -0.169 4.169 20 C -0.115 4.115 21 H 0.119 0.881 22 C -0.132 4.132 23 C -0.162 4.162 24 C -0.193 4.193 25 C 0.088 3.912 26 Cl -0.077 7.077 27 C -0.237 4.237 28 H 0.300 0.700 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.423 0.577 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -6.077 6.269 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.114 0.886 9 C 0.117 3.883 10 C -0.213 4.213 11 C -0.036 4.036 12 C -0.887 4.887 13 S 2.815 3.185 14 O -0.978 6.978 15 O -0.987 6.987 16 N -0.834 5.834 17 C -0.032 4.032 18 H 0.137 0.863 19 C -0.208 4.208 20 C -0.136 4.136 21 H 0.137 0.863 22 C -0.150 4.150 23 C -0.199 4.199 24 C -0.231 4.231 25 C 0.059 3.941 26 Cl -0.048 7.048 27 C -0.258 4.258 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.259 0.741 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.043 -6.338 5.429 10.920 hybrid contribution 0.845 0.877 0.487 1.311 sum -6.198 -5.461 5.916 10.161 Atomic orbital electron populations 1.69813 1.09182 1.31951 1.30820 1.26979 0.95696 1.05027 0.90802 0.84958 0.79397 0.75040 0.79300 1.17719 1.18646 1.18629 1.20271 0.97199 0.90995 1.39530 0.88644 1.18059 0.91127 0.92454 0.86681 1.21450 0.99800 0.97030 1.03029 1.20467 0.97113 0.91118 0.94884 1.29497 1.14701 1.19579 1.24969 1.00506 0.72488 0.72950 0.72550 1.93522 1.61566 1.62220 1.80510 1.93465 1.51374 1.85378 1.68510 1.54831 1.53853 1.33967 1.40735 1.21433 0.93166 0.96569 0.92074 0.86269 1.23578 1.00596 1.03224 0.93396 1.22344 0.89216 0.98889 1.03141 0.86267 1.21837 0.90479 1.03218 0.99511 1.23065 0.98479 0.95801 1.02555 1.23040 1.04124 1.01780 0.94112 1.20073 0.93591 0.86404 0.93982 1.98316 1.88691 1.33899 1.83890 1.21149 1.04450 0.91636 1.08536 0.88852 0.86204 0.85731 0.74106 0.87413 0.87274 0.86572 0.88466 0.87237 0.88155 0.90033 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.31 10.86 21.82 0.24 -36.07 16 2 C 0.03 1.51 5.24 85.25 0.45 1.96 16 3 Si 0.99 32.85 29.57 68.60 2.03 34.88 16 4 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 7 C -0.45 -21.48 9.06 23.46 0.21 -21.26 16 8 H 0.10 4.27 7.87 -2.91 -0.02 4.24 16 9 C 0.12 5.98 5.55 -21.29 -0.12 5.86 16 10 C -0.19 -9.48 8.66 22.73 0.20 -9.28 16 11 C -0.02 -0.72 9.52 22.21 0.21 -0.51 16 12 C -0.79 -34.72 5.89 22.48 0.13 -34.58 16 13 S 2.72 105.11 5.02 -56.49 -0.28 104.82 16 14 O -0.99 -41.48 16.56 -128.00 -2.12 -43.60 16 15 O -1.00 -42.16 16.72 -128.00 -2.14 -44.30 16 16 N -1.08 -32.12 5.71 -169.38 -0.97 -33.09 16 17 C 0.08 2.10 6.12 44.99 0.28 2.37 16 18 H 0.12 3.73 8.11 -2.39 -0.02 3.71 16 19 C -0.17 -3.77 10.18 30.59 0.31 -3.46 16 20 C -0.12 -2.48 5.79 -10.79 -0.06 -2.54 16 21 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 22 C -0.13 -2.64 5.87 -10.79 -0.06 -2.70 16 23 C -0.16 -2.79 10.26 30.62 0.31 -2.48 16 24 C -0.19 -4.20 10.18 30.62 0.31 -3.89 16 25 C 0.09 3.83 6.29 22.27 0.14 3.97 16 26 Cl -0.08 -2.84 26.39 -2.72 -0.07 -2.91 16 27 C -0.24 -10.95 9.57 22.75 0.22 -10.74 16 28 H 0.30 12.14 8.30 -92.71 -0.77 11.37 16 29 H 0.12 5.99 6.22 -2.91 -0.02 5.98 16 30 H 0.12 5.37 7.31 -2.91 -0.02 5.35 16 31 H 0.42 10.50 8.96 -96.74 -0.87 9.63 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -58.44 360.30 -0.57 -59.01 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.22 Total: 38.54 kcal Atomic # 6 Polarization: -79.80 SS G_CDS: 2.53 Total: -77.28 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.73 Total: -69.16 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -4.26 Total: -87.90 kcal Atomic # 14 Polarization: 32.85 SS G_CDS: 2.03 Total: 34.88 kcal Atomic # 16 Polarization: 105.11 SS G_CDS: -0.28 Total: 104.82 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -58.44 -0.57 -59.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556294414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.205 kcal (2) G-P(sol) polarization free energy of solvation -58.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds