Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46973 * 148.24944 * 3 2 1 5 5 C 1.37095 * 120.00355 * 264.20460 * 4 3 2 6 6 H 1.07997 * 119.99990 * 198.09507 * 5 4 3 7 7 C 1.38949 * 119.99525 * 18.09338 * 5 4 3 8 8 N 1.31408 * 120.00192 * 18.78193 * 7 5 4 9 9 Si 1.86803 * 119.99996 * 198.77619 * 7 5 4 10 10 H 1.48497 * 109.47245 * 85.59117 * 9 7 5 11 11 H 1.48501 * 109.46944 * 205.59360 * 9 7 5 12 12 H 1.48499 * 109.46819 * 325.58975 * 9 7 5 13 13 C 1.34780 * 119.99915 * 84.20895 * 4 3 2 14 14 O 1.21298 * 120.00271 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00043 * 359.97438 * 13 4 3 16 16 N 1.46501 * 109.47149 * 180.02562 * 15 13 4 17 17 S 1.65603 * 120.00011 * 165.00658 * 16 15 13 18 18 O 1.42098 * 106.40233 * 178.54167 * 17 16 15 19 19 O 1.42099 * 106.39970 * 311.45874 * 17 16 15 20 20 C 1.76193 * 107.21917 * 64.99666 * 17 16 15 21 21 C 1.38222 * 120.01292 * 115.00172 * 20 17 16 22 22 C 1.38222 * 120.02978 * 179.97438 * 21 20 17 23 23 C 1.38273 * 120.04792 * 0.02562 * 22 21 20 24 24 C 1.38176 * 120.02560 * 359.97438 * 23 22 21 25 25 C 1.38440 * 120.01532 * 294.72500 * 20 17 16 26 26 F 1.35095 * 120.02186 * 359.97438 * 25 20 17 27 27 H 1.08994 * 109.47046 * 28.25043 * 3 2 1 28 28 H 1.09002 * 109.46773 * 268.24841 * 3 2 1 29 29 H 0.97006 * 120.00318 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47049 * 60.00618 * 15 13 4 31 31 H 1.08994 * 109.47628 * 300.00456 * 15 13 4 32 32 H 0.96998 * 120.00276 * 344.72567 * 16 15 13 33 33 H 1.08003 * 119.98294 * 0.02562 * 21 20 17 34 34 H 1.08000 * 119.97975 * 180.02562 * 22 21 20 35 35 H 1.08003 * 119.98483 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.01096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1754 -0.7268 5 6 3.4374 1.0697 -2.0503 6 1 4.0583 1.8244 -2.5097 7 6 2.9846 -0.0087 -2.8006 8 7 1.9586 -0.7154 -2.3826 9 14 3.8344 -0.4539 -4.4034 10 1 4.9943 -1.3367 -4.1202 11 1 2.8776 -1.1629 -5.2906 12 1 4.3067 0.7843 -5.0737 13 6 3.2088 2.3602 -0.0943 14 8 3.6122 3.3330 -0.6962 15 6 2.8329 2.4766 1.3604 16 7 3.0432 3.8549 1.8103 17 16 2.3772 4.3713 3.2358 18 8 2.7867 5.7216 3.4042 19 8 1.0143 3.9699 3.2106 20 6 3.1420 3.4541 4.5313 21 6 3.9303 4.1011 5.4643 22 6 4.5300 3.3820 6.4811 23 6 4.3426 2.0147 6.5658 24 6 3.5549 1.3657 5.6343 25 6 2.9490 2.0860 4.6185 26 9 2.1737 1.4536 3.7108 27 1 2.9717 -0.9044 -0.4864 28 1 2.9713 0.0322 1.0272 29 1 1.6427 -1.4684 -2.9062 30 1 3.4534 1.8026 1.9511 31 1 1.7839 2.2095 1.4871 32 1 3.5759 4.4638 1.2752 33 1 4.0770 5.1692 5.3993 34 1 5.1455 3.8885 7.2099 35 1 4.8120 1.4538 7.3604 36 1 3.4090 0.2977 5.7004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565014409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -72.333869 kcal Electronic energy + Delta-G solvation = -27756.130454 eV Core-core repulsion = 23476.398935 eV Total energy + Delta-G solvation = -4279.731519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.46587 -39.25958 -39.07399 -37.20126 -36.01995 -35.86237 -34.70382 -34.04521 -31.94977 -31.80389 -30.90833 -27.77520 -27.05737 -24.32125 -23.91076 -23.18507 -19.73706 -19.64795 -18.70652 -18.06280 -17.76863 -17.19142 -16.79343 -16.57233 -16.21221 -15.95004 -15.71394 -15.35000 -14.84346 -14.53542 -14.49840 -14.35702 -13.88647 -13.66092 -13.08195 -12.99816 -12.84587 -12.71807 -12.42236 -12.12028 -12.02764 -12.01275 -11.95523 -11.93081 -11.63170 -11.29638 -11.21009 -11.01226 -10.61589 -10.46193 -10.41606 -9.91655 -9.51981 -9.36027 -9.23859 -8.78717 -8.16175 -6.57516 -4.10336 0.17890 0.43852 0.74034 2.81761 3.04313 3.08970 3.18514 3.22273 3.43130 3.60166 3.70363 3.71830 3.96460 4.06055 4.11676 4.39750 4.53561 4.64451 4.75942 4.82361 4.92031 5.13474 5.17489 5.23886 5.42160 5.42516 5.55522 5.63874 5.72636 5.80914 5.84510 6.04335 6.35116 6.45814 7.15153 7.39349 7.77070 8.16501 8.72816 8.87451 9.07358 9.56770 10.47873 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003667 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.568858 B = 7633.582474 C = 8017.567400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.240 3.760 3 C 0.218 3.782 4 N -0.435 5.435 5 C -0.314 4.314 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.451 3.549 14 O -0.565 6.565 15 C 0.099 3.901 16 N -1.094 6.094 17 S 2.698 3.302 18 O -0.955 6.955 19 O -0.943 6.943 20 C -0.714 4.714 21 C 0.006 3.994 22 C -0.152 4.152 23 C -0.039 4.039 24 C -0.171 4.171 25 C 0.194 3.806 26 F -0.116 7.116 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.275 0.725 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.429 0.571 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 1.109 18.337 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.078 4.078 3 C 0.090 3.910 4 N -0.156 5.156 5 C -0.441 4.441 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.515 5.515 9 Si 0.759 3.241 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.238 3.762 14 O -0.448 6.448 15 C -0.031 4.031 16 N -0.859 5.859 17 S 2.784 3.216 18 O -0.945 6.945 19 O -0.933 6.933 20 C -0.800 4.800 21 C -0.013 4.013 22 C -0.171 4.171 23 C -0.057 4.057 24 C -0.191 4.191 25 C 0.173 3.827 26 F -0.094 7.094 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.269 0.731 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.917 1.889 18.111 19.146 hybrid contribution 1.179 -0.973 -0.917 1.782 sum 7.096 0.916 17.193 18.623 Atomic orbital electron populations 1.80926 1.13491 1.08446 1.11420 1.29195 0.95289 0.92777 0.90574 1.18823 0.81871 0.93983 0.96308 1.43592 1.55985 1.05382 1.10596 1.19767 1.29879 1.09961 0.84529 0.87122 1.25332 0.94904 0.97053 0.99818 1.69832 1.20950 1.20211 1.40484 0.85828 0.78766 0.78933 0.80576 1.20020 1.21014 1.19341 1.19813 0.84864 0.83558 0.87985 1.90534 1.50607 1.36245 1.67395 1.21303 1.02835 0.82265 0.96701 1.55094 1.71378 1.21222 1.38172 1.01881 0.74047 0.73160 0.72486 1.93579 1.83386 1.31748 1.85769 1.93646 1.30541 1.83190 1.85920 1.31190 1.19929 1.05645 1.23203 1.20923 0.89290 1.00831 0.90274 1.21380 1.01691 0.94476 0.99556 1.21364 0.93408 0.94655 0.96319 1.21309 1.00590 1.01537 0.95629 1.17138 0.89029 0.88947 0.87553 1.91656 1.71649 1.81961 1.64180 0.84871 0.89920 0.91384 0.90076 0.88244 0.73116 0.82891 0.84266 0.84138 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.14 18.54 42.16 0.78 -10.36 16 2 C 0.24 5.29 12.95 -20.76 -0.27 5.02 16 3 C 0.22 4.18 4.91 -6.83 -0.03 4.14 16 4 N -0.44 -9.80 2.60 -117.94 -0.31 -10.11 16 5 C -0.31 -7.79 9.33 -14.93 -0.14 -7.93 16 6 H 0.11 2.88 7.38 -52.49 -0.39 2.49 16 7 C 0.03 0.79 4.93 -17.47 -0.09 0.70 16 8 N -0.88 -21.43 9.33 55.50 0.52 -20.91 16 9 Si 0.93 19.05 29.59 -169.99 -5.03 14.02 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.45 9.87 7.63 -10.98 -0.08 9.78 16 14 O -0.57 -13.97 15.38 5.54 0.09 -13.88 16 15 C 0.10 1.72 3.65 -5.19 -0.02 1.71 16 16 N -1.09 -17.56 5.93 -11.65 -0.07 -17.63 16 17 S 2.70 40.64 5.48 -107.50 -0.59 40.05 16 18 O -0.95 -15.15 16.97 -57.17 -0.97 -16.12 16 19 O -0.94 -17.32 16.88 -57.17 -0.97 -18.29 16 20 C -0.71 -8.70 5.89 -39.51 -0.23 -8.94 16 21 C 0.01 0.06 9.55 -39.59 -0.38 -0.32 16 22 C -0.15 -1.09 10.04 -39.57 -0.40 -1.49 16 23 C -0.04 -0.26 10.04 -39.59 -0.40 -0.66 16 24 C -0.17 -1.49 10.03 -39.51 -0.40 -1.88 16 25 C 0.19 2.30 6.80 -39.42 -0.27 2.03 16 26 F -0.12 -1.58 12.97 2.25 0.03 -1.55 16 27 H 0.13 2.57 6.40 -51.93 -0.33 2.24 16 28 H 0.08 1.18 6.68 -51.93 -0.35 0.84 16 29 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.08 1.13 6.04 -51.93 -0.31 0.81 16 31 H 0.10 1.82 6.62 -51.93 -0.34 1.48 16 32 H 0.43 6.85 7.71 -34.47 -0.27 6.58 16 33 H 0.15 1.27 7.33 -52.48 -0.38 0.89 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -34.06 331.41 -7.00 -41.06 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.78 Total: 6.54 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.70 Total: 2.16 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.92 Total: -59.00 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.85 Total: -48.29 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.03 Total: -1.55 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: 40.64 SS G_CDS: -0.59 Total: 40.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.06 -7.00 -41.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565014409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.271 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds