Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47113 * 267.32620 * 3 2 1 5 5 H 1.48496 * 109.47139 * 27.32557 * 3 2 1 6 6 H 1.48497 * 109.47369 * 147.32859 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00659 * 353.51244 * 7 2 1 9 9 C 1.50702 * 119.99715 * 173.51587 * 7 2 1 10 10 O 1.42897 * 110.88931 * 328.70356 * 9 7 2 11 11 C 1.55159 * 111.03899 * 92.61008 * 9 7 2 12 12 C 1.54327 * 103.02532 * 153.39434 * 11 9 7 13 13 N 1.47029 * 107.26504 * 338.14289 * 12 11 9 14 14 C 1.34770 * 125.65049 * 178.85022 * 13 12 11 15 15 O 1.21283 * 120.00059 * 179.68699 * 14 13 12 16 16 C 1.50706 * 119.99857 * 359.96704 * 14 13 12 17 17 S 1.81406 * 109.47051 * 179.72669 * 16 14 13 18 18 C 1.76195 * 102.99755 * 180.02562 * 17 16 14 19 19 C 1.38949 * 120.08819 * 359.97438 * 18 17 16 20 20 C 1.38087 * 119.93541 * 179.97438 * 19 18 17 21 21 C 1.38310 * 120.10113 * 359.97438 * 20 19 18 22 22 C 1.38294 * 120.16723 * 0.04433 * 21 20 19 23 23 C 1.38188 * 120.06364 * 359.69636 * 22 21 20 24 24 Cl 1.73602 * 120.05202 * 180.29800 * 23 22 21 25 25 C 1.47425 * 108.69818 * 358.58334 * 13 12 11 26 26 H 0.97001 * 119.99997 * 359.97438 * 1 2 3 27 27 H 0.96703 * 114.00170 * 292.32566 * 10 9 7 28 28 H 1.09006 * 110.71782 * 271.95536 * 11 9 7 29 29 H 1.09002 * 110.71929 * 35.04258 * 11 9 7 30 30 H 1.08998 * 109.99219 * 218.66658 * 12 11 9 31 31 H 1.09002 * 109.77821 * 97.49526 * 12 11 9 32 32 H 1.09006 * 109.47014 * 299.72055 * 16 14 13 33 33 H 1.09000 * 109.47408 * 59.72435 * 16 14 13 34 34 H 1.08002 * 120.02732 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.95274 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.91664 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.97038 * 180.02562 * 22 21 20 38 38 H 1.09007 * 110.36272 * 143.20026 * 25 13 12 39 39 H 1.09006 * 110.36461 * 265.51762 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5532 2.0138 -1.3986 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4572 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5042 -1.1981 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2003 -1.1845 1.2387 12 6 5.5567 -1.8632 0.9538 13 7 5.3952 -2.6653 -0.2678 14 6 6.3601 -3.3952 -0.8615 15 8 6.1114 -4.0254 -1.8675 16 6 7.7465 -3.4334 -0.2718 17 16 8.8062 -4.4997 -1.2871 18 6 10.3581 -4.4226 -0.4562 19 6 10.4953 -3.6542 0.6933 20 6 11.7129 -3.5965 1.3423 21 6 12.7955 -4.3026 0.8500 22 6 12.6637 -5.0683 -0.2941 23 6 11.4470 -5.1353 -0.9459 24 17 11.2799 -6.1027 -2.3777 25 6 4.0011 -2.5441 -0.7319 26 1 -0.4850 0.8401 0.0004 27 1 3.6749 -0.1604 -1.8786 28 1 4.3439 -0.1619 1.5881 29 1 3.6263 -1.7612 1.9640 30 1 5.8327 -2.5088 1.7874 31 1 6.3238 -1.1042 0.8001 32 1 8.1599 -2.4250 -0.2501 33 1 7.6990 -3.8286 0.7429 34 1 9.6505 -3.1028 1.0789 35 1 11.8200 -2.9991 2.2356 36 1 13.7462 -4.2556 1.3601 37 1 13.5110 -5.6187 -0.6755 38 1 3.9646 -2.5216 -1.8211 39 1 3.4005 -3.3689 -0.3483 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = -55.217459 kcal Electronic energy + Delta-G solvation = -24234.453174 eV Core-core repulsion = 20487.340597 eV Total energy + Delta-G solvation = -3747.112577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84002 -39.44282 -37.73234 -36.72455 -34.90072 -32.45073 -31.93880 -31.09124 -30.91566 -29.68152 -28.25705 -25.18299 -23.35380 -23.12750 -22.59559 -19.98436 -19.49205 -18.25748 -17.60737 -17.02795 -16.73288 -16.00333 -15.96255 -15.46296 -15.09592 -14.84853 -14.75786 -14.36610 -14.12122 -13.99593 -13.85289 -13.43385 -12.87883 -12.70000 -12.43627 -12.18060 -12.04463 -11.86651 -11.85248 -11.74294 -11.64495 -11.27951 -11.14149 -10.57792 -10.48133 -10.31816 -10.29244 -10.15964 -9.83834 -9.31414 -9.21802 -8.77793 -8.61183 -8.28097 -7.64572 -6.25873 -4.38815 0.68475 0.78640 1.02748 1.79203 2.15935 2.65335 3.15809 3.18999 3.40084 3.46896 3.62567 4.31472 4.41592 4.43571 4.52872 4.70736 4.82240 4.84919 4.94330 4.98612 5.02553 5.06352 5.22884 5.34940 5.43916 5.63012 5.67102 5.75434 5.76242 5.95035 5.97707 6.30900 6.31806 6.41592 6.55090 6.60388 6.94546 7.36554 7.69663 8.04688 8.20681 8.53070 8.74079 9.34900 10.82871 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.002457 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.920308 B =11395.588627 C =12059.422671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.326 1.326 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.559 6.559 11 C -0.122 4.122 12 C 0.097 3.903 13 N -0.603 5.603 14 C 0.542 3.458 15 O -0.531 6.531 16 C -0.155 4.155 17 S 0.002 5.998 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.025 4.025 24 Cl -0.053 7.053 25 C 0.090 3.910 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.886 -7.109 3.613 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.787 3.213 4 H -0.220 1.220 5 H -0.257 1.257 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.180 3.820 10 O -0.367 6.367 11 C -0.160 4.160 12 C -0.026 4.026 13 N -0.337 5.337 14 C 0.328 3.672 15 O -0.409 6.409 16 C -0.306 4.306 17 S 0.248 5.752 18 C -0.210 4.210 19 C -0.153 4.153 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.058 4.058 24 Cl -0.024 7.024 25 C -0.032 4.032 26 H 0.077 0.923 27 H 0.221 0.779 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.384 -7.890 2.439 25.745 hybrid contribution 0.509 1.355 0.723 1.618 sum 24.893 -6.535 3.162 25.930 Atomic orbital electron populations 1.69963 1.06864 1.27920 1.47279 1.25119 0.94885 1.00545 0.92496 0.85639 0.77736 0.79941 0.77963 1.22020 1.25740 1.19614 1.21084 0.88289 0.95528 1.54228 0.90014 1.20243 0.93831 0.80956 0.86986 1.86109 1.80061 1.46531 1.24032 1.22991 0.92723 1.01082 0.99211 1.22200 1.00462 0.93908 0.85996 1.48485 1.11329 1.46379 1.27476 1.19003 0.84357 0.79724 0.84104 1.90745 1.81631 1.43784 1.24758 1.23925 0.97435 1.04987 1.04300 1.86596 0.97530 1.58175 1.32890 1.22141 0.98785 1.00631 0.99470 1.21201 0.99147 1.00039 0.94864 1.21177 0.92342 0.98300 0.99508 1.21131 0.99358 0.97506 0.96122 1.21017 0.95543 0.99179 0.95401 1.20383 0.94363 0.98876 0.92213 1.98392 1.97627 1.69390 1.36983 1.23211 0.78974 1.00849 1.00138 0.92310 0.77945 0.89973 0.89446 0.92116 0.91882 0.86602 0.86654 0.85038 0.85052 0.84913 0.84545 0.90843 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.95 22.54 24.93 -169.99 -4.24 18.30 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.33 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.27 -6.17 5.42 56.52 0.31 -5.87 16 7 C -0.55 -14.05 8.89 -34.44 -0.31 -14.35 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.22 4.57 0.70 -89.62 -0.06 4.51 16 10 O -0.56 -11.56 8.52 -35.23 -0.30 -11.86 16 11 C -0.12 -2.18 5.90 -24.89 -0.15 -2.32 16 12 C 0.10 1.40 6.49 -3.06 -0.02 1.38 16 13 N -0.60 -10.01 3.33 -170.51 -0.57 -10.58 16 14 C 0.54 8.87 7.87 -10.99 -0.09 8.79 16 15 O -0.53 -10.60 16.12 5.55 0.09 -10.51 16 16 C -0.16 -1.86 4.01 36.01 0.14 -1.71 16 17 S 0.00 0.03 19.97 -107.50 -2.15 -2.12 16 18 C -0.10 -1.06 6.11 -39.02 -0.24 -1.30 16 19 C -0.13 -1.15 9.36 -39.37 -0.37 -1.51 16 20 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 21 C -0.12 -0.82 10.04 -39.53 -0.40 -1.21 16 22 C -0.09 -0.74 9.82 -39.58 -0.39 -1.13 16 23 C -0.02 -0.26 6.34 -39.30 -0.25 -0.51 16 24 Cl -0.05 -0.58 27.84 -51.86 -1.44 -2.02 16 25 C 0.09 1.72 6.07 -2.53 -0.02 1.71 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.37 6.95 8.98 45.56 0.41 7.36 16 28 H 0.08 1.51 6.66 -51.93 -0.35 1.16 16 29 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 1.17 7.75 -51.92 -0.40 0.77 16 33 H 0.12 1.11 7.75 -51.92 -0.40 0.71 16 34 H 0.13 0.99 5.88 -52.49 -0.31 0.68 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.07 1.45 8.02 -51.93 -0.42 1.03 16 39 H 0.08 1.48 7.98 -51.93 -0.41 1.07 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -31.70 349.20 -9.26 -40.96 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.06 Total: 4.19 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.63 Total: -6.82 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.21 Total: -35.38 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.21 Total: -22.37 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.24 Total: 18.30 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.15 Total: -2.12 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.44 Total: -2.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.70 -9.26 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.258 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds