Wall clock time and date at job start Sat Apr 11 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47113 * 267.32620 * 3 2 1 5 5 H 1.48496 * 109.47139 * 27.32557 * 3 2 1 6 6 H 1.48497 * 109.47369 * 147.32859 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00659 * 353.51244 * 7 2 1 9 9 C 1.50702 * 119.99715 * 173.51587 * 7 2 1 10 10 O 1.42897 * 110.88931 * 328.70356 * 9 7 2 11 11 C 1.55159 * 111.03899 * 92.61008 * 9 7 2 12 12 C 1.54327 * 103.02532 * 153.39434 * 11 9 7 13 13 N 1.47029 * 107.26504 * 338.14289 * 12 11 9 14 14 C 1.34770 * 125.65049 * 178.85022 * 13 12 11 15 15 O 1.21283 * 120.00059 * 179.68699 * 14 13 12 16 16 C 1.50706 * 119.99857 * 359.96704 * 14 13 12 17 17 S 1.81406 * 109.47051 * 179.72669 * 16 14 13 18 18 C 1.76195 * 102.99755 * 180.02562 * 17 16 14 19 19 C 1.38949 * 120.08819 * 359.97438 * 18 17 16 20 20 C 1.38087 * 119.93541 * 179.97438 * 19 18 17 21 21 C 1.38310 * 120.10113 * 359.97438 * 20 19 18 22 22 C 1.38294 * 120.16723 * 0.04433 * 21 20 19 23 23 C 1.38188 * 120.06364 * 359.69636 * 22 21 20 24 24 Cl 1.73602 * 120.05202 * 180.29800 * 23 22 21 25 25 C 1.47425 * 108.69818 * 358.58334 * 13 12 11 26 26 H 0.97001 * 119.99997 * 359.97438 * 1 2 3 27 27 H 0.96703 * 114.00170 * 292.32566 * 10 9 7 28 28 H 1.09006 * 110.71782 * 271.95536 * 11 9 7 29 29 H 1.09002 * 110.71929 * 35.04258 * 11 9 7 30 30 H 1.08998 * 109.99219 * 218.66658 * 12 11 9 31 31 H 1.09002 * 109.77821 * 97.49526 * 12 11 9 32 32 H 1.09006 * 109.47014 * 299.72055 * 16 14 13 33 33 H 1.09000 * 109.47408 * 59.72435 * 16 14 13 34 34 H 1.08002 * 120.02732 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.95274 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.91664 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.97038 * 180.02562 * 22 21 20 38 38 H 1.09007 * 110.36272 * 143.20026 * 25 13 12 39 39 H 1.09006 * 110.36461 * 265.51762 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5532 2.0138 -1.3986 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4572 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5042 -1.1981 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2003 -1.1845 1.2387 12 6 5.5567 -1.8632 0.9538 13 7 5.3952 -2.6653 -0.2678 14 6 6.3601 -3.3952 -0.8615 15 8 6.1114 -4.0254 -1.8675 16 6 7.7465 -3.4334 -0.2718 17 16 8.8062 -4.4997 -1.2871 18 6 10.3581 -4.4226 -0.4562 19 6 10.4953 -3.6542 0.6933 20 6 11.7129 -3.5965 1.3423 21 6 12.7955 -4.3026 0.8500 22 6 12.6637 -5.0683 -0.2941 23 6 11.4470 -5.1353 -0.9459 24 17 11.2799 -6.1027 -2.3777 25 6 4.0011 -2.5441 -0.7319 26 1 -0.4850 0.8401 0.0004 27 1 3.6749 -0.1604 -1.8786 28 1 4.3439 -0.1619 1.5881 29 1 3.6263 -1.7612 1.9640 30 1 5.8327 -2.5088 1.7874 31 1 6.3238 -1.1042 0.8001 32 1 8.1599 -2.4250 -0.2501 33 1 7.6990 -3.8286 0.7429 34 1 9.6505 -3.1028 1.0789 35 1 11.8200 -2.9991 2.2356 36 1 13.7462 -4.2556 1.3601 37 1 13.5110 -5.6187 -0.6755 38 1 3.9646 -2.5216 -1.8211 39 1 3.4005 -3.3689 -0.3483 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:02 Heat of formation + Delta-G solvation = -76.405068 kcal Electronic energy + Delta-G solvation = -24235.371938 eV Core-core repulsion = 20487.340597 eV Total energy + Delta-G solvation = -3748.031341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20678 -40.05050 -39.23026 -37.46075 -36.41275 -34.46453 -32.81964 -32.10403 -31.65940 -30.85043 -29.74625 -26.93899 -24.21274 -23.95153 -23.55300 -21.61024 -20.72960 -19.46457 -19.03117 -18.19447 -17.53000 -17.26875 -17.12916 -16.73662 -16.51855 -16.14621 -15.70316 -15.52313 -15.25793 -14.78260 -14.75134 -14.55290 -14.35646 -14.03545 -13.95442 -13.64755 -13.26516 -13.19794 -12.81088 -12.73180 -12.55682 -12.49693 -12.30335 -12.21282 -12.00190 -11.96580 -11.28688 -11.14215 -11.11563 -10.82990 -10.64620 -10.41352 -9.84641 -9.66204 -8.52249 -8.34295 -6.48464 0.05508 0.14421 0.19551 1.04035 1.37857 1.42732 1.51557 1.53736 1.74406 1.94412 2.45410 2.57824 2.96779 3.29801 3.50696 3.72895 3.83186 3.87978 4.04862 4.07178 4.09707 4.28848 4.32826 4.35316 4.40529 4.44998 4.63515 4.78776 4.80371 4.95477 5.05173 5.13290 5.21953 5.24475 5.36965 5.42426 5.53620 5.78974 6.04018 6.42924 6.57843 6.88428 6.95127 7.29596 8.78711 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.002457 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.920308 B =11395.588627 C =12059.422671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 1.011 2.989 4 H -0.289 1.289 5 H -0.339 1.339 6 H -0.250 1.250 7 C -0.549 4.549 8 H 0.043 0.957 9 C 0.216 3.784 10 O -0.558 6.558 11 C -0.121 4.121 12 C 0.102 3.898 13 N -0.604 5.604 14 C 0.538 3.462 15 O -0.576 6.576 16 C -0.134 4.134 17 S -0.065 6.065 18 C -0.107 4.107 19 C -0.133 4.133 20 C -0.091 4.091 21 C -0.111 4.111 22 C -0.097 4.097 23 C -0.045 4.045 24 Cl -0.071 7.071 25 C 0.098 3.902 26 H 0.267 0.733 27 H 0.379 0.621 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.060 0.940 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.959 -5.995 5.952 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.845 3.155 4 H -0.216 1.216 5 H -0.271 1.271 6 H -0.175 1.175 7 C -0.587 4.587 8 H 0.061 0.939 9 C 0.176 3.824 10 O -0.367 6.367 11 C -0.159 4.159 12 C -0.019 4.019 13 N -0.337 5.337 14 C 0.326 3.674 15 O -0.456 6.456 16 C -0.284 4.284 17 S 0.180 5.820 18 C -0.221 4.221 19 C -0.157 4.157 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.078 4.078 24 Cl -0.042 7.042 25 C -0.026 4.026 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 28.512 -6.785 4.800 29.699 hybrid contribution -0.704 0.913 0.021 1.153 sum 27.809 -5.872 4.821 28.828 Atomic orbital electron populations 1.70093 1.08673 1.28571 1.50213 1.25901 0.95320 1.03874 0.92537 0.84664 0.76912 0.75775 0.78169 1.21588 1.27147 1.17473 1.21347 0.91138 0.93748 1.52443 0.93870 1.20140 0.91320 0.81877 0.89100 1.86064 1.79618 1.46352 1.24689 1.22896 0.94551 1.01789 0.96666 1.22341 0.98702 0.94810 0.86071 1.48478 1.10077 1.46884 1.28226 1.19718 0.85712 0.78504 0.83437 1.90732 1.82619 1.45437 1.26843 1.23788 0.93793 1.06215 1.04628 1.86852 1.00350 1.59662 1.35173 1.22041 0.97119 1.02421 1.00527 1.21505 1.00597 0.99515 0.94033 1.21596 0.91497 0.97936 1.00055 1.21582 1.00703 0.95784 0.95107 1.21320 0.95095 0.99522 0.95775 1.20660 0.95410 0.99446 0.92252 1.98381 1.97736 1.69956 1.38163 1.22820 0.81015 0.99491 0.99228 0.92436 0.77153 0.89824 0.89601 0.88097 0.89259 0.83997 0.83637 0.83369 0.81960 0.81717 0.82956 0.92192 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.00 13.96 21.45 0.30 -55.70 16 2 C 0.02 1.28 5.46 84.65 0.46 1.74 16 3 Si 1.01 46.11 24.93 68.60 1.71 47.82 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.34 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.25 -10.45 5.42 99.48 0.54 -9.91 16 7 C -0.55 -28.44 8.89 25.60 0.23 -28.21 16 8 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 9 C 0.22 8.77 0.70 -10.15 -0.01 8.77 16 10 O -0.56 -21.99 8.52 -148.98 -1.27 -23.25 16 11 C -0.12 -3.97 5.90 31.78 0.19 -3.79 16 12 C 0.10 2.47 6.49 86.73 0.56 3.04 16 13 N -0.60 -18.63 3.33 -811.76 -2.70 -21.32 16 14 C 0.54 16.65 7.87 87.66 0.69 17.34 16 15 O -0.58 -23.08 16.12 -3.04 -0.05 -23.13 16 16 C -0.13 -2.77 4.01 71.24 0.29 -2.48 16 17 S -0.06 -1.65 19.97 -56.49 -1.13 -2.78 16 18 C -0.11 -2.15 6.11 22.64 0.14 -2.01 16 19 C -0.13 -1.85 9.36 22.40 0.21 -1.64 16 20 C -0.09 -0.88 10.04 22.25 0.22 -0.65 16 21 C -0.11 -1.03 10.04 22.30 0.22 -0.80 16 22 C -0.10 -1.31 9.82 22.27 0.22 -1.10 16 23 C -0.04 -0.87 6.34 22.45 0.14 -0.73 16 24 Cl -0.07 -1.57 27.84 -2.72 -0.08 -1.64 16 25 C 0.10 3.73 6.07 86.85 0.53 4.25 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.38 13.72 8.98 -74.06 -0.67 13.05 16 28 H 0.08 2.75 6.66 -2.38 -0.02 2.73 16 29 H 0.09 2.83 8.03 -2.39 -0.02 2.81 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.14 2.21 7.75 -2.39 -0.02 2.19 16 33 H 0.15 2.12 7.75 -2.39 -0.02 2.10 16 34 H 0.15 1.47 5.88 -2.91 -0.02 1.45 16 35 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.06 2.41 8.02 -2.38 -0.02 2.39 16 39 H 0.06 2.51 7.98 -2.38 -0.02 2.50 16 Total: -1.00 -72.96 349.20 1.14 -71.82 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.26 Total: 14.48 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.09 Total: -6.29 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -2.40 Total: -77.03 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -1.32 Total: -46.38 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.71 Total: 47.82 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -1.13 Total: -2.78 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.64 kcal Total: -72.96 1.14 -71.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.581 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds