Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00098 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00144 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35688 * 107.50635 * 179.97438 * 10 9 7 12 12 N 1.40546 * 126.08194 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99879 * 179.97438 * 12 11 10 14 14 O 1.21652 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.47335 * 120.00093 * 179.97438 * 13 12 11 16 16 C 1.36320 * 122.55159 * 180.02562 * 15 13 12 17 17 S 1.71017 * 108.98714 * 179.97438 * 16 15 13 18 18 C 1.75974 * 90.62348 * 0.02562 * 17 16 15 19 19 C 1.47913 * 125.22923 * 180.02562 * 18 17 16 20 20 C 1.39490 * 119.73678 * 359.70202 * 19 18 17 21 21 C 1.38392 * 119.05240 * 179.79620 * 20 19 18 22 22 C 1.38788 * 118.51955 * 0.46815 * 21 20 19 23 23 C 1.38313 * 119.39686 * 359.75038 * 22 21 20 24 24 N 1.31709 * 120.90572 * 0.02562 * 23 22 21 25 25 N 1.29780 * 109.54723 * 359.75506 * 18 17 16 26 26 C 1.40658 * 107.83103 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.39004 * 359.74762 * 26 11 10 28 28 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 29 29 H 1.08003 * 126.24555 * 359.97281 * 10 9 7 30 30 H 0.96997 * 120.00308 * 0.02562 * 12 11 10 31 31 H 1.07998 * 125.50366 * 0.02562 * 16 15 13 32 32 H 1.08002 * 120.47689 * 0.02562 * 20 19 18 33 33 H 1.08002 * 120.73860 * 180.22247 * 21 20 19 34 34 H 1.08004 * 120.30190 * 179.72680 * 22 21 20 35 35 H 1.07996 * 119.54638 * 179.97438 * 23 22 21 36 36 H 1.08004 * 125.80726 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2124 6 1 1.8882 2.3964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5385 -0.0175 12 7 0.9890 -5.9378 -0.0242 13 6 -0.1102 -6.7177 -0.0273 14 8 -1.2159 -6.2104 -0.0248 15 6 0.0273 -8.1846 -0.0348 16 6 -1.0483 -9.0221 -0.0387 17 16 -0.4938 -10.6398 -0.0479 18 6 1.1770 -10.0874 -0.0451 19 6 2.3664 -10.9667 -0.0508 20 6 2.2027 -12.3520 -0.0528 21 6 3.3252 -13.1613 -0.0625 22 6 4.5759 -12.5597 -0.0599 23 6 4.6654 -11.1795 -0.0530 24 7 3.5815 -10.4314 -0.0485 25 7 1.2053 -8.7900 -0.0431 26 6 -0.3513 -3.8197 -0.0128 27 7 -0.0715 -2.5410 -0.0006 28 1 -0.4850 0.8400 0.0004 29 1 2.9302 -3.8708 -0.0150 30 1 1.8706 -6.3423 -0.0258 31 1 -2.0833 -8.7137 -0.0372 32 1 1.2140 -12.7868 -0.0507 33 1 3.2301 -14.2371 -0.0679 34 1 5.4712 -13.1638 -0.0627 35 1 5.6374 -10.7088 -0.0506 36 1 -1.3420 -4.2498 -0.0149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751395638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = 113.880050 kcal Electronic energy + Delta-G solvation = -24613.895668 eV Core-core repulsion = 20805.300966 eV Total energy + Delta-G solvation = -3808.594702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93588 -41.31748 -40.78063 -39.37976 -36.02031 -35.00148 -33.68437 -33.28090 -32.28694 -30.78398 -29.84158 -27.47738 -26.62731 -25.13979 -24.45657 -22.95026 -22.45111 -21.39848 -20.71056 -19.98064 -19.09203 -17.88796 -17.82594 -17.41124 -17.12741 -16.76499 -16.63784 -16.57482 -15.92067 -15.67622 -15.43769 -15.09381 -14.89577 -14.79557 -14.40751 -14.37289 -13.96252 -13.53461 -13.36340 -13.13317 -12.94516 -12.89760 -12.75641 -12.03235 -11.93858 -11.17659 -11.16409 -11.06689 -10.95305 -10.86436 -10.83390 -10.48312 -10.43369 -10.13870 -9.46097 -8.58239 -8.49516 -6.26816 -0.97073 0.01183 0.04779 0.35243 0.36401 0.97750 1.29936 1.39044 1.58900 1.72374 2.01694 2.07624 2.25191 2.58340 2.62145 2.91093 2.91569 3.06516 3.36965 3.77442 3.98476 4.04736 4.09656 4.11611 4.18692 4.38723 4.50089 4.56084 4.70021 4.76992 4.97079 5.02915 5.15005 5.23295 5.24531 5.37117 5.71120 5.91996 6.21318 6.31972 6.65024 6.69456 7.01083 7.20928 7.41399 7.62342 8.50343 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002253 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.386992 B =12422.282143 C =13879.814623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.008 4.008 3 Si 1.023 2.977 4 H -0.241 1.241 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.164 5.164 10 C -0.081 4.081 11 C -0.049 4.049 12 N -0.600 5.600 13 C 0.572 3.428 14 O -0.565 6.565 15 C -0.006 4.006 16 C -0.219 4.219 17 S 0.312 5.688 18 C 0.058 3.942 19 C 0.160 3.840 20 C -0.148 4.148 21 C -0.066 4.066 22 C -0.150 4.150 23 C 0.087 3.913 24 N -0.493 5.493 25 N -0.434 5.434 26 C -0.055 4.055 27 N -0.306 5.306 28 H 0.278 0.722 29 H 0.184 0.816 30 H 0.419 0.581 31 H 0.204 0.796 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -31.221 -0.161 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.219 4.219 3 Si 0.841 3.159 4 H -0.164 1.164 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.068 4.932 10 C -0.232 4.232 11 C -0.155 4.155 12 N -0.243 5.243 13 C 0.357 3.643 14 O -0.445 6.445 15 C -0.143 4.143 16 C -0.362 4.362 17 S 0.570 5.430 18 C -0.218 4.218 19 C 0.022 3.978 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.171 4.171 23 C -0.071 4.071 24 N -0.203 5.203 25 N -0.149 5.149 26 C -0.230 4.230 27 N -0.138 5.138 28 H 0.088 0.912 29 H 0.201 0.799 30 H 0.256 0.744 31 H 0.221 0.779 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.738 -29.313 -0.154 30.078 hybrid contribution 0.478 0.358 -0.004 0.597 sum 7.216 -28.956 -0.158 29.842 Atomic orbital electron populations 1.70401 1.08458 1.29201 1.37001 1.26945 0.96550 1.04411 0.94039 0.84492 0.78975 0.74116 0.78314 1.16386 1.19590 1.19589 1.20700 0.93009 0.80783 1.53882 0.84178 1.44864 1.03676 1.04670 1.40027 1.21925 0.98653 0.84338 1.18259 1.17374 0.93389 0.82959 1.21794 1.42302 1.09708 1.02781 1.69491 1.17499 0.83927 0.85197 0.77637 1.90671 1.26659 1.74490 1.52678 1.20094 0.88338 0.94447 1.11437 1.27291 1.05819 0.98854 1.04269 1.83005 0.96455 1.01223 1.62359 1.25962 0.97791 0.91370 1.06705 1.18680 0.88598 0.90032 1.00532 1.22257 1.02528 0.91409 1.00824 1.22020 0.90926 1.02435 0.93737 1.22752 1.00463 0.95666 0.98189 1.23302 0.96801 0.92143 0.94875 1.67583 0.98781 1.42533 1.11417 1.66772 1.26298 1.08697 1.13182 1.24173 0.98842 0.90843 1.09148 1.78135 0.91865 1.16264 1.27512 0.91240 0.79887 0.74435 0.77929 0.82187 0.80098 0.80754 0.80688 0.81157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.78 11.81 21.66 0.26 -48.53 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 3 Si 1.02 39.81 29.55 68.60 2.03 41.84 16 4 H -0.24 -8.45 7.11 99.48 0.71 -7.74 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.35 -19.49 10.25 84.01 0.86 -18.63 16 8 H 0.14 6.77 7.83 -2.91 -0.02 6.74 16 9 N -0.16 -9.62 3.74 -190.00 -0.71 -10.33 16 10 C -0.08 -4.15 11.49 83.38 0.96 -3.19 16 11 C -0.05 -2.52 6.90 37.74 0.26 -2.26 16 12 N -0.60 -25.90 5.46 -306.92 -1.68 -27.58 16 13 C 0.57 24.01 7.77 86.64 0.67 24.68 16 14 O -0.57 -26.95 13.83 -4.20 -0.06 -27.01 16 15 C -0.01 -0.19 6.68 41.00 0.27 0.08 16 16 C -0.22 -5.37 10.63 67.37 0.72 -4.66 16 17 S 0.31 4.80 22.08 -56.49 -1.25 3.55 16 18 C 0.06 1.37 7.38 87.56 0.65 2.02 16 19 C 0.16 3.28 6.75 41.87 0.28 3.56 16 20 C -0.15 -1.65 9.63 22.61 0.22 -1.43 16 21 C -0.07 -0.41 10.16 22.44 0.23 -0.18 16 22 C -0.15 -1.12 10.11 22.42 0.23 -0.89 16 23 C 0.09 1.29 11.18 84.73 0.95 2.23 16 24 N -0.49 -11.50 10.25 -185.04 -1.90 -13.40 16 25 N -0.43 -13.51 9.98 -178.86 -1.79 -15.29 16 26 C -0.06 -3.20 10.85 85.42 0.93 -2.28 16 27 N -0.31 -19.32 10.40 -56.46 -0.59 -19.91 16 28 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.18 7.69 8.06 -2.91 -0.02 7.67 16 30 H 0.42 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.20 4.51 8.01 -2.91 -0.02 4.48 16 32 H 0.16 0.85 7.27 -2.91 -0.02 0.83 16 33 H 0.18 -0.29 8.06 -2.91 -0.02 -0.32 16 34 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 35 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.17 9.87 5.91 -2.91 -0.02 9.85 16 Total: -1.00 -86.39 341.57 2.41 -83.98 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.40 Total: 33.57 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 7.68 Total: -0.89 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -6.40 Total: -135.04 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.25 Total: 3.55 kcal Total: -86.39 2.41 -83.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751395638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.857 kcal (2) G-P(sol) polarization free energy of solvation -86.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds