Wall clock time and date at job start Sat Apr 11 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97945 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.98011 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.98194 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36506 * 126.06700 * 185.48922 * 9 7 2 11 11 C 1.35696 * 107.50208 * 179.97438 * 10 9 7 12 12 N 1.40534 * 126.07978 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99778 * 179.97438 * 12 11 10 14 14 O 1.21729 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.46566 * 119.99639 * 179.97438 * 13 12 11 16 16 C 1.36901 * 126.12042 * 180.02562 * 15 13 12 17 17 N 1.30633 * 114.03428 * 180.02562 * 16 15 13 18 18 C 1.30339 * 117.30614 * 0.02562 * 17 16 15 19 19 C 1.47792 * 124.75226 * 180.02562 * 18 17 16 20 20 C 1.40020 * 120.55765 * 359.97438 * 19 18 17 21 21 C 1.38357 * 118.28425 * 179.97438 * 20 19 18 22 22 C 1.38347 * 119.30771 * 359.97438 * 21 20 19 23 23 N 1.31922 * 121.08858 * 0.02562 * 22 21 20 24 24 C 1.31702 * 121.87511 * 359.66168 * 23 22 21 25 25 S 1.70924 * 110.49603 * 359.72459 * 18 17 16 26 26 C 1.40667 * 107.83320 * 359.97438 * 11 10 9 27 27 N 1.30905 * 108.38741 * 359.75409 * 26 11 10 28 28 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.07998 * 126.24654 * 359.94223 * 10 9 7 30 30 H 0.96995 * 120.00189 * 359.97438 * 12 11 10 31 31 H 1.08004 * 122.97904 * 359.97438 * 16 15 13 32 32 H 1.07998 * 120.85901 * 0.02590 * 20 19 18 33 33 H 1.07999 * 120.34362 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.45914 * 180.02562 * 22 21 20 35 35 H 1.07995 * 119.72009 * 180.33366 * 24 23 22 36 36 H 1.08004 * 125.80413 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4121 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6294 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0092 -5.9190 0.4667 13 6 -0.0868 -6.6994 0.5476 14 8 -1.1953 -6.1984 0.5033 15 6 0.0563 -8.1512 0.6889 16 6 -0.9655 -9.0576 0.7813 17 7 -0.5687 -10.2964 0.9013 18 6 0.7164 -10.5135 0.9186 19 6 1.3441 -11.8454 1.0465 20 6 0.5549 -12.9962 1.1616 21 6 1.1917 -14.2190 1.2782 22 6 2.5744 -14.2652 1.2770 23 7 3.2927 -13.1642 1.1671 24 6 2.7333 -11.9779 1.0475 25 16 1.5740 -9.0430 0.7643 26 6 -0.3401 -3.8163 0.2653 27 7 -0.0657 -2.5421 0.1447 28 1 -0.4850 0.8400 0.0004 29 1 2.9416 -3.8545 0.2573 30 1 1.8925 -6.3182 0.5023 31 1 -2.0073 -8.7735 0.7579 32 1 -0.5232 -12.9312 1.1585 33 1 0.6154 -15.1279 1.3685 34 1 3.0741 -15.2185 1.3675 35 1 3.3550 -11.0997 0.9544 36 1 -1.3290 -4.2482 0.3115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761574350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:08 Heat of formation + Delta-G solvation = 137.976744 kcal Electronic energy + Delta-G solvation = -24329.049085 eV Core-core repulsion = 20521.499294 eV Total energy + Delta-G solvation = -3807.549791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72864 -40.14927 -39.57085 -38.39379 -34.36632 -33.57791 -33.24123 -32.40591 -30.47678 -29.90395 -27.87377 -26.43813 -24.95513 -24.18344 -23.39756 -22.06422 -20.96640 -19.71594 -19.52347 -18.85979 -17.58593 -17.38438 -16.90754 -16.35557 -15.86485 -15.50817 -15.38064 -15.13252 -14.76305 -14.58140 -14.13127 -14.03628 -13.93027 -13.60509 -13.52777 -13.19098 -12.97167 -12.53372 -11.81229 -11.72973 -11.51277 -11.31210 -11.02696 -10.68308 -10.56470 -10.30846 -10.19566 -10.04263 -10.02755 -9.72232 -9.51080 -9.24452 -8.88889 -8.71217 -8.13357 -6.79990 -6.62242 -4.28798 -0.42527 0.71466 0.82947 0.89677 1.28512 2.36454 2.89863 3.01877 3.07744 3.17141 3.33176 3.36774 3.53169 3.65931 3.82419 3.97536 4.32504 4.35292 4.41757 4.49797 4.63736 4.69818 4.95685 4.97116 5.05119 5.11923 5.18157 5.60291 5.65404 5.88796 6.09814 6.17000 6.34878 6.77248 6.87640 6.96906 7.15136 7.30998 7.40437 7.78637 7.99956 8.17132 8.48595 8.68544 9.30117 9.58740 10.33828 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.033235 B = 0.001970 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.292295 B =14212.339862 C =15040.853562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.081 4.081 11 C -0.064 4.064 12 N -0.611 5.611 13 C 0.574 3.426 14 O -0.518 6.518 15 C -0.267 4.267 16 C 0.114 3.886 17 N -0.466 5.466 18 C 0.073 3.927 19 C -0.078 4.078 20 C -0.028 4.028 21 C -0.172 4.172 22 C 0.109 3.891 23 N -0.479 5.479 24 C 0.123 3.877 25 S 0.195 5.805 26 C -0.027 4.027 27 N -0.260 5.260 28 H 0.276 0.724 29 H 0.147 0.853 30 H 0.394 0.606 31 H 0.195 0.805 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -24.061 2.298 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.094 4.906 10 C -0.232 4.232 11 C -0.170 4.170 12 N -0.252 5.252 13 C 0.358 3.642 14 O -0.396 6.396 15 C -0.392 4.392 16 C -0.044 4.044 17 N -0.180 5.180 18 C -0.199 4.199 19 C -0.083 4.083 20 C -0.057 4.057 21 C -0.192 4.192 22 C -0.048 4.048 23 N -0.186 5.186 24 C -0.037 4.037 25 S 0.454 5.546 26 C -0.203 4.203 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.227 0.773 31 H 0.211 0.789 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.729 -22.551 2.161 23.368 hybrid contribution -0.627 -0.095 0.074 0.639 sum 5.102 -22.647 2.235 23.321 Atomic orbital electron populations 1.70216 1.06196 1.28151 1.34734 1.25667 0.95712 1.00368 0.95397 0.85803 0.79520 0.79911 0.78887 1.19613 1.19986 1.18689 1.19909 0.92193 0.80621 1.52721 0.86472 1.44580 1.04044 1.03705 1.38304 1.21253 0.96831 0.85703 1.19433 1.17216 0.94594 0.80969 1.24225 1.42360 1.07461 1.05624 1.69766 1.16445 0.85066 0.82963 0.79688 1.90757 1.25025 1.72916 1.50931 1.26386 0.96045 0.99707 1.17084 1.22407 1.01272 0.84518 0.96247 1.66311 1.13160 1.22213 1.16308 1.24965 0.92345 0.97774 1.04766 1.18922 0.94250 0.90007 1.05161 1.21788 1.01437 0.90651 0.91870 1.22196 0.96170 0.98764 1.02072 1.22992 0.91251 0.97115 0.93453 1.67724 1.40465 0.98388 1.12061 1.22879 0.90608 0.96104 0.94135 1.83668 1.08932 0.98172 1.63811 1.24134 0.97931 0.90861 1.07341 1.78276 0.90228 1.14962 1.25647 0.91348 0.83523 0.77260 0.78871 0.83366 0.83918 0.82116 0.82446 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.14 11.83 55.50 0.66 -20.48 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.60 29.55 -169.99 -5.02 13.58 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.32 -8.37 10.24 -14.82 -0.15 -8.52 16 8 H 0.12 2.71 7.84 -52.49 -0.41 2.29 16 9 N -0.14 -3.76 3.74 -11.41 -0.04 -3.81 16 10 C -0.08 -1.87 11.50 -16.38 -0.19 -2.06 16 11 C -0.06 -1.47 6.90 -83.86 -0.58 -2.04 16 12 N -0.61 -10.91 5.46 -11.21 -0.06 -10.97 16 13 C 0.57 10.21 7.75 -12.90 -0.10 10.11 16 14 O -0.52 -10.99 14.02 5.16 0.07 -10.92 16 15 C -0.27 -3.69 6.52 -36.71 -0.24 -3.93 16 16 C 0.11 1.48 11.15 -18.55 -0.21 1.28 16 17 N -0.47 -5.68 10.11 -12.00 -0.12 -5.80 16 18 C 0.07 0.78 7.14 -14.28 -0.10 0.68 16 19 C -0.08 -0.72 5.89 -104.83 -0.62 -1.34 16 20 C -0.03 -0.22 9.80 -38.87 -0.38 -0.60 16 21 C -0.17 -1.00 10.10 -39.50 -0.40 -1.40 16 22 C 0.11 0.71 11.17 -17.47 -0.20 0.51 16 23 N -0.48 -4.26 10.35 -12.90 -0.13 -4.39 16 24 C 0.12 1.06 10.74 -17.12 -0.18 0.88 16 25 S 0.20 1.98 21.16 -107.50 -2.27 -0.29 16 26 C -0.03 -0.70 10.85 -17.03 -0.18 -0.89 16 27 N -0.26 -7.48 10.41 30.80 0.32 -7.16 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 30 H 0.39 5.56 8.00 -40.82 -0.33 5.23 16 31 H 0.19 2.33 8.06 -52.48 -0.42 1.90 16 32 H 0.15 1.09 7.87 -52.49 -0.41 0.68 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.16 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.16 1.10 7.24 -52.49 -0.38 0.72 16 36 H 0.18 4.51 5.91 -52.48 -0.31 4.20 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -33.97 340.59 -7.77 -41.74 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.67 Total: 9.60 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -3.62 Total: -6.23 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.62 Total: -52.61 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.27 Total: -0.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.97 -7.77 -41.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761574350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.717 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds