Wall clock time and date at job start Sat Apr 11 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97945 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.98011 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.98194 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36506 * 126.06700 * 185.48922 * 9 7 2 11 11 C 1.35696 * 107.50208 * 179.97438 * 10 9 7 12 12 N 1.40534 * 126.07978 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99778 * 179.97438 * 12 11 10 14 14 O 1.21729 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.46566 * 119.99639 * 179.97438 * 13 12 11 16 16 C 1.36901 * 126.12042 * 180.02562 * 15 13 12 17 17 N 1.30633 * 114.03428 * 180.02562 * 16 15 13 18 18 C 1.30339 * 117.30614 * 0.02562 * 17 16 15 19 19 C 1.47792 * 124.75226 * 180.02562 * 18 17 16 20 20 C 1.40020 * 120.55765 * 359.97438 * 19 18 17 21 21 C 1.38357 * 118.28425 * 179.97438 * 20 19 18 22 22 C 1.38347 * 119.30771 * 359.97438 * 21 20 19 23 23 N 1.31922 * 121.08858 * 0.02562 * 22 21 20 24 24 C 1.31702 * 121.87511 * 359.66168 * 23 22 21 25 25 S 1.70924 * 110.49603 * 359.72459 * 18 17 16 26 26 C 1.40667 * 107.83320 * 359.97438 * 11 10 9 27 27 N 1.30905 * 108.38741 * 359.75409 * 26 11 10 28 28 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.07998 * 126.24654 * 359.94223 * 10 9 7 30 30 H 0.96995 * 120.00189 * 359.97438 * 12 11 10 31 31 H 1.08004 * 122.97904 * 359.97438 * 16 15 13 32 32 H 1.07998 * 120.85901 * 0.02590 * 20 19 18 33 33 H 1.07999 * 120.34362 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.45914 * 180.02562 * 22 21 20 35 35 H 1.07995 * 119.72009 * 180.33366 * 24 23 22 36 36 H 1.08004 * 125.80413 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4121 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6294 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0092 -5.9190 0.4667 13 6 -0.0868 -6.6994 0.5476 14 8 -1.1953 -6.1984 0.5033 15 6 0.0563 -8.1512 0.6889 16 6 -0.9655 -9.0576 0.7813 17 7 -0.5687 -10.2964 0.9013 18 6 0.7164 -10.5135 0.9186 19 6 1.3441 -11.8454 1.0465 20 6 0.5549 -12.9962 1.1616 21 6 1.1917 -14.2190 1.2782 22 6 2.5744 -14.2652 1.2770 23 7 3.2927 -13.1642 1.1671 24 6 2.7333 -11.9779 1.0475 25 16 1.5740 -9.0430 0.7643 26 6 -0.3401 -3.8163 0.2653 27 7 -0.0657 -2.5421 0.1447 28 1 -0.4850 0.8400 0.0004 29 1 2.9416 -3.8545 0.2573 30 1 1.8925 -6.3182 0.5023 31 1 -2.0073 -8.7735 0.7579 32 1 -0.5232 -12.9312 1.1585 33 1 0.6154 -15.1279 1.3685 34 1 3.0741 -15.2185 1.3675 35 1 3.3550 -11.0997 0.9544 36 1 -1.3290 -4.2482 0.3115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761574350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:08 Heat of formation + Delta-G solvation = 114.272952 kcal Electronic energy + Delta-G solvation = -24330.076958 eV Core-core repulsion = 20521.499294 eV Total energy + Delta-G solvation = -3808.577664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82878 -41.39249 -40.72543 -39.82461 -36.03949 -35.06401 -34.26009 -32.99416 -32.31857 -31.10776 -29.51312 -27.47982 -26.66520 -24.89788 -24.12985 -23.35705 -22.76757 -21.39136 -20.65889 -20.05050 -19.14302 -18.16328 -17.93774 -17.41698 -17.22390 -16.73897 -16.55083 -16.54551 -15.90860 -15.73861 -15.51428 -15.11174 -14.97544 -14.80708 -14.70115 -14.63696 -14.10533 -13.51239 -13.37304 -13.11775 -12.94710 -12.85634 -12.67278 -12.08207 -11.96727 -11.42854 -11.24061 -11.07105 -10.95655 -10.81377 -10.67792 -10.61254 -10.55634 -10.13128 -9.53812 -8.60108 -8.49002 -6.26103 -1.29377 -0.08268 0.08557 0.23183 0.34711 1.19650 1.40122 1.40970 1.58582 1.72636 1.91145 1.97516 2.19882 2.51802 2.68582 2.78203 2.87832 3.07138 3.43721 3.64020 3.74560 3.83140 3.95537 4.07354 4.11115 4.41224 4.46873 4.54635 4.67598 4.88218 4.98478 5.01809 5.08188 5.13457 5.23812 5.32639 5.58836 5.93164 6.24990 6.36326 6.53268 6.70106 6.84527 7.14150 7.43122 7.63720 8.50614 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.033235 B = 0.001970 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.292295 B =14212.339862 C =15040.853562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.165 5.165 10 C -0.075 4.075 11 C -0.050 4.050 12 N -0.607 5.607 13 C 0.580 3.420 14 O -0.559 6.559 15 C -0.310 4.310 16 C 0.127 3.873 17 N -0.485 5.485 18 C 0.084 3.916 19 C -0.103 4.103 20 C -0.034 4.034 21 C -0.163 4.163 22 C 0.112 3.888 23 N -0.503 5.503 24 C 0.121 3.879 25 S 0.264 5.736 26 C -0.054 4.054 27 N -0.310 5.310 28 H 0.277 0.723 29 H 0.191 0.809 30 H 0.414 0.586 31 H 0.194 0.806 32 H 0.150 0.850 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.168 0.832 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -26.813 2.632 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.066 4.934 10 C -0.226 4.226 11 C -0.156 4.156 12 N -0.251 5.251 13 C 0.367 3.633 14 O -0.440 6.440 15 C -0.435 4.435 16 C -0.034 4.034 17 N -0.199 5.199 18 C -0.187 4.187 19 C -0.108 4.108 20 C -0.063 4.063 21 C -0.182 4.182 22 C -0.044 4.044 23 N -0.211 5.211 24 C -0.039 4.039 25 S 0.525 5.475 26 C -0.229 4.229 27 N -0.141 5.141 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.251 0.749 31 H 0.211 0.789 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.210 0.790 35 H 0.185 0.815 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.721 -25.358 2.496 26.931 hybrid contribution -1.494 0.290 0.003 1.522 sum 7.227 -25.068 2.499 26.209 Atomic orbital electron populations 1.70396 1.08481 1.29208 1.36975 1.26904 0.96459 1.04406 0.94078 0.84577 0.78526 0.74085 0.79015 1.18959 1.20266 1.16547 1.20653 0.93483 0.80903 1.53339 0.83954 1.44866 1.03599 1.05193 1.39707 1.21992 0.98799 0.84460 1.17332 1.17263 0.93235 0.83159 1.21965 1.42228 1.08815 1.03677 1.70344 1.16914 0.84206 0.84473 0.77696 1.90731 1.26603 1.74367 1.52269 1.25885 0.98877 0.97649 1.21101 1.22516 1.01434 0.84813 0.94606 1.66396 1.13945 1.21532 1.18024 1.25425 0.92291 0.98990 1.01973 1.18998 0.94747 0.89596 1.07509 1.21992 1.01669 0.91128 0.91529 1.22538 0.96179 0.99150 1.00341 1.23608 0.91768 0.97642 0.91428 1.67784 1.41240 0.98990 1.13068 1.23040 0.90395 0.96726 0.93734 1.83331 1.05624 0.96227 1.62343 1.24183 0.98947 0.91030 1.08747 1.78168 0.92181 1.16405 1.27385 0.91323 0.79202 0.74895 0.78903 0.83228 0.80651 0.79027 0.81460 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.32 11.83 21.66 0.26 -47.07 16 2 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.17 29.55 68.60 2.03 40.20 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.24 -8.18 7.11 99.48 0.71 -7.48 16 7 C -0.35 -18.44 10.24 84.01 0.86 -17.58 16 8 H 0.14 6.40 7.84 -2.91 -0.02 6.37 16 9 N -0.17 -9.10 3.74 -190.00 -0.71 -9.81 16 10 C -0.08 -3.43 11.50 83.38 0.96 -2.48 16 11 C -0.05 -2.30 6.90 37.75 0.26 -2.04 16 12 N -0.61 -21.41 5.46 -307.57 -1.68 -23.09 16 13 C 0.58 20.91 7.75 86.41 0.67 21.58 16 14 O -0.56 -24.79 14.02 -4.44 -0.06 -24.85 16 15 C -0.31 -8.42 6.52 24.13 0.16 -8.26 16 16 C 0.13 3.27 11.15 84.56 0.94 4.21 16 17 N -0.48 -11.32 10.11 -191.89 -1.94 -13.26 16 18 C 0.08 1.66 7.14 87.44 0.62 2.28 16 19 C -0.10 -1.67 5.89 -20.00 -0.12 -1.79 16 20 C -0.03 -0.45 9.80 22.73 0.22 -0.23 16 21 C -0.16 -1.31 10.10 22.32 0.23 -1.09 16 22 C 0.11 1.06 11.17 84.71 0.95 2.00 16 23 N -0.50 -7.55 10.35 -194.73 -2.01 -9.56 16 24 C 0.12 1.81 10.74 85.03 0.91 2.72 16 25 S 0.26 4.83 21.16 -56.49 -1.20 3.64 16 26 C -0.05 -2.93 10.85 85.42 0.93 -2.01 16 27 N -0.31 -18.65 10.41 -56.45 -0.59 -19.23 16 28 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.19 6.71 8.06 -2.91 -0.02 6.69 16 30 H 0.41 10.94 8.00 -92.71 -0.74 10.20 16 31 H 0.19 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.15 1.90 7.87 -2.91 -0.02 1.88 16 33 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.17 1.93 7.24 -2.91 -0.02 1.90 16 36 H 0.17 9.25 5.91 -2.91 -0.02 9.23 16 Total: -1.00 -78.55 340.59 2.58 -75.97 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.43 Total: 29.62 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 8.06 Total: -2.55 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -6.68 Total: -122.02 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.20 Total: 3.64 kcal Total: -78.55 2.58 -75.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761574350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.244 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds