Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48506 * 109.47301 * 240.00087 * 3 2 1 5 5 H 1.48501 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47564 * 120.00044 * 3 2 1 7 7 C 1.37882 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46903 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54016 * 68.37817 * 11 10 9 13 13 O 1.42095 * 110.54325 * 291.62292 * 11 10 9 14 14 N 1.65602 * 104.44614 * 180.02562 * 11 10 9 15 15 C 1.34776 * 120.00292 * 65.00093 * 14 11 10 16 16 O 1.21283 * 119.99966 * 0.02562 * 15 14 11 17 17 C 1.50704 * 120.00015 * 179.97438 * 15 14 11 18 18 C 1.50699 * 109.46850 * 180.02562 * 17 15 14 19 19 C 1.38247 * 119.92634 * 270.01861 * 18 17 15 20 20 C 1.38240 * 120.14459 * 179.75199 * 19 18 17 21 21 C 1.38552 * 120.02633 * 0.42901 * 20 19 18 22 22 C 1.39265 * 119.82706 * 359.57585 * 21 20 19 23 23 C 1.38231 * 119.92969 * 90.00273 * 18 17 15 24 24 O 1.36496 * 108.64230 * 180.24572 * 22 21 20 25 25 C 1.43981 * 105.48444 * 342.72036 * 24 22 21 26 26 O 1.36505 * 131.53353 * 179.87931 * 21 20 19 27 27 H 0.96999 * 120.00366 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46703 * 59.99712 * 9 7 2 29 29 H 1.08995 * 109.46746 * 299.99489 * 9 7 2 30 30 H 1.09002 * 109.47231 * 60.00005 * 10 9 7 31 31 H 1.09002 * 109.47246 * 299.99962 * 10 9 7 32 32 H 0.97003 * 120.00102 * 244.99309 * 14 11 10 33 33 H 1.08993 * 109.46905 * 60.00211 * 17 15 14 34 34 H 1.08998 * 109.46686 * 300.00067 * 17 15 14 35 35 H 1.07994 * 119.93290 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.99327 * 180.33354 * 20 19 18 37 37 H 1.08003 * 119.98943 * 0.02562 * 23 18 17 38 38 H 1.09007 * 110.56955 * 268.54960 * 25 24 22 39 39 H 1.09003 * 110.57719 * 145.67764 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2354 13 8 0.6648 -5.4194 1.2385 14 7 2.5206 -6.3926 0.0020 15 6 3.3471 -6.5119 1.0599 16 8 3.2246 -5.7702 2.0116 17 6 4.4226 -7.5675 1.0606 18 6 5.2013 -7.4903 2.3486 19 6 6.3182 -6.6799 2.4316 20 6 7.0329 -6.6017 3.6124 21 6 6.6359 -7.3430 4.7135 22 6 5.5107 -8.1594 4.6298 23 6 4.7970 -8.2296 3.4443 24 8 5.3269 -8.7740 5.8346 25 6 6.5815 -8.6423 6.5287 26 8 7.1571 -7.4462 5.9709 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 2.6182 -6.9862 -0.7590 33 1 5.0947 -7.4020 0.2188 34 1 3.9647 -8.5527 0.9718 35 1 6.6306 -6.1032 1.5737 36 1 7.9019 -5.9637 3.6762 37 1 3.9241 -8.8620 3.3766 38 1 7.2206 -9.5030 6.3312 39 1 6.4163 -8.5244 7.5996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776123073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -148.094414 kcal Electronic energy + Delta-G solvation = -26814.744683 eV Core-core repulsion = 22622.895494 eV Total energy + Delta-G solvation = -4191.849189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41366 -40.30730 -38.15752 -36.70434 -36.53776 -35.62440 -34.47365 -33.89319 -32.57180 -31.18200 -30.70610 -28.07825 -25.92295 -25.61550 -23.25231 -23.07344 -21.71444 -21.34607 -19.40580 -18.20975 -18.11838 -17.67421 -17.63776 -17.52249 -16.62286 -16.35309 -15.91424 -15.23133 -15.11052 -14.78475 -14.72831 -14.53998 -14.35871 -14.11162 -13.86862 -13.44817 -13.23308 -13.06520 -12.66588 -12.52914 -12.42750 -12.19548 -11.80353 -11.73063 -11.62186 -11.38903 -11.15364 -11.06334 -11.00191 -10.87531 -10.42962 -10.38671 -10.25701 -9.71160 -9.19219 -9.09485 -8.49106 -8.29317 -6.11537 -4.17130 0.46611 0.84720 0.98276 2.05261 2.47821 2.70662 3.15850 3.28315 3.28803 3.33428 3.35474 4.02071 4.20053 4.23434 4.29926 4.33799 4.37955 4.57390 4.61496 4.65506 4.85999 4.91806 4.96542 5.04300 5.12224 5.23735 5.28928 5.58763 5.71475 5.73509 5.81329 5.93667 6.06647 6.18874 6.45454 6.61178 6.85647 7.28534 7.35471 7.44175 7.81152 8.17145 8.85564 9.47373 10.99579 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002828 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.944239 B = 9897.849431 C =11321.928652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.565 3.435 12 O -0.955 6.955 13 O -0.938 6.938 14 N -1.060 6.060 15 C 0.530 3.470 16 O -0.477 6.477 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.091 4.091 20 C -0.097 4.097 21 C 0.033 3.967 22 C 0.032 3.968 23 C -0.083 4.083 24 O -0.308 6.308 25 C 0.213 3.787 26 O -0.309 6.309 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.429 0.571 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 -21.307 4.076 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.710 4.710 11 S 2.665 3.335 12 O -0.945 6.945 13 O -0.928 6.928 14 N -0.821 5.821 15 C 0.316 3.684 16 O -0.347 6.347 17 C -0.140 4.140 18 C -0.066 4.066 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.011 4.011 22 C -0.012 4.012 23 C -0.102 4.102 24 O -0.225 6.225 25 C 0.102 3.898 26 O -0.226 6.226 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.264 0.736 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.993 -20.866 5.050 26.186 hybrid contribution 1.061 0.766 -0.159 1.318 sum 16.054 -20.100 4.892 26.185 Atomic orbital electron populations 1.69938 1.06124 1.27357 1.49439 1.25061 0.94987 0.99540 0.94851 0.86509 0.79486 0.82427 0.78727 1.20073 1.21068 1.20011 1.20939 0.93062 0.89602 1.52348 0.92009 1.18981 0.92630 0.90329 0.99003 1.30334 1.13708 1.16194 1.10737 1.06727 0.75017 0.77297 0.74457 1.93589 1.70500 1.85318 1.45141 1.93601 1.70309 1.84345 1.44540 1.55447 1.49345 1.50454 1.26866 1.20515 0.81707 0.85130 0.81071 1.90960 1.68992 1.42591 1.32178 1.20739 0.96290 0.99673 0.97287 1.18933 0.95961 0.97638 0.94067 1.20802 0.94576 0.97971 0.97568 1.20036 1.01700 1.00564 0.89280 1.19838 0.94870 1.00385 0.86055 1.19671 0.96729 0.97506 0.87311 1.19862 1.00280 1.01595 0.88418 1.87377 1.34519 1.75152 1.25408 1.25620 0.79879 0.86572 0.97776 1.87368 1.66542 1.44100 1.24559 0.92440 0.94780 0.94596 0.85061 0.86038 0.73648 0.86307 0.86675 0.84169 0.84463 0.84632 0.89940 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 10 C -0.58 -11.22 5.82 37.15 0.22 -11.00 16 11 S 2.56 45.41 5.11 -107.50 -0.55 44.86 16 12 O -0.95 -18.46 18.08 -57.54 -1.04 -19.50 16 13 O -0.94 -20.43 17.03 -64.80 -1.10 -21.53 16 14 N -1.06 -12.13 5.60 31.22 0.17 -11.96 16 15 C 0.53 6.39 7.56 -10.98 -0.08 6.30 16 16 O -0.48 -8.11 14.14 -11.60 -0.16 -8.27 16 17 C -0.10 -0.69 5.83 -29.03 -0.17 -0.86 16 18 C -0.07 -0.62 4.37 -104.62 -0.46 -1.08 16 19 C -0.09 -0.83 9.69 -39.58 -0.38 -1.21 16 20 C -0.10 -0.97 10.06 -39.46 -0.40 -1.37 16 21 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 22 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 23 C -0.08 -0.89 9.71 -39.47 -0.38 -1.27 16 24 O -0.31 -3.50 11.40 -45.68 -0.52 -4.02 16 25 C 0.21 1.68 8.89 101.05 0.90 2.58 16 26 O -0.31 -3.41 11.40 -45.70 -0.52 -3.93 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.13 2.53 7.19 -51.92 -0.37 2.16 16 31 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 32 H 0.43 2.90 8.79 -34.47 -0.30 2.60 16 33 H 0.12 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.12 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -40.14 355.78 -8.95 -49.09 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.44 Total: -0.18 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.87 Total: -20.34 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.91 Total: -37.90 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -3.35 Total: -57.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 45.41 SS G_CDS: -0.55 Total: 44.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -40.14 -8.95 -49.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.002 kcal (2) G-P(sol) polarization free energy of solvation -40.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds