Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48506 * 109.47301 * 240.00087 * 3 2 1 5 5 H 1.48501 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47564 * 120.00044 * 3 2 1 7 7 C 1.37882 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46903 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54016 * 68.37817 * 11 10 9 13 13 O 1.42095 * 110.54325 * 291.62292 * 11 10 9 14 14 N 1.65602 * 104.44614 * 180.02562 * 11 10 9 15 15 C 1.34776 * 120.00292 * 65.00093 * 14 11 10 16 16 O 1.21283 * 119.99966 * 0.02562 * 15 14 11 17 17 C 1.50704 * 120.00015 * 179.97438 * 15 14 11 18 18 C 1.50699 * 109.46850 * 180.02562 * 17 15 14 19 19 C 1.38247 * 119.92634 * 270.01861 * 18 17 15 20 20 C 1.38240 * 120.14459 * 179.75199 * 19 18 17 21 21 C 1.38552 * 120.02633 * 0.42901 * 20 19 18 22 22 C 1.39265 * 119.82706 * 359.57585 * 21 20 19 23 23 C 1.38231 * 119.92969 * 90.00273 * 18 17 15 24 24 O 1.36496 * 108.64230 * 180.24572 * 22 21 20 25 25 C 1.43981 * 105.48444 * 342.72036 * 24 22 21 26 26 O 1.36505 * 131.53353 * 179.87931 * 21 20 19 27 27 H 0.96999 * 120.00366 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46703 * 59.99712 * 9 7 2 29 29 H 1.08995 * 109.46746 * 299.99489 * 9 7 2 30 30 H 1.09002 * 109.47231 * 60.00005 * 10 9 7 31 31 H 1.09002 * 109.47246 * 299.99962 * 10 9 7 32 32 H 0.97003 * 120.00102 * 244.99309 * 14 11 10 33 33 H 1.08993 * 109.46905 * 60.00211 * 17 15 14 34 34 H 1.08998 * 109.46686 * 300.00067 * 17 15 14 35 35 H 1.07994 * 119.93290 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.99327 * 180.33354 * 20 19 18 37 37 H 1.08003 * 119.98943 * 0.02562 * 23 18 17 38 38 H 1.09007 * 110.56955 * 268.54960 * 25 24 22 39 39 H 1.09003 * 110.57719 * 145.67764 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2354 13 8 0.6648 -5.4194 1.2385 14 7 2.5206 -6.3926 0.0020 15 6 3.3471 -6.5119 1.0599 16 8 3.2246 -5.7702 2.0116 17 6 4.4226 -7.5675 1.0606 18 6 5.2013 -7.4903 2.3486 19 6 6.3182 -6.6799 2.4316 20 6 7.0329 -6.6017 3.6124 21 6 6.6359 -7.3430 4.7135 22 6 5.5107 -8.1594 4.6298 23 6 4.7970 -8.2296 3.4443 24 8 5.3269 -8.7740 5.8346 25 6 6.5815 -8.6423 6.5287 26 8 7.1571 -7.4462 5.9709 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 2.6182 -6.9862 -0.7590 33 1 5.0947 -7.4020 0.2188 34 1 3.9647 -8.5527 0.9718 35 1 6.6306 -6.1032 1.5737 36 1 7.9019 -5.9637 3.6762 37 1 3.9241 -8.8620 3.3766 38 1 7.2206 -9.5030 6.3312 39 1 6.4163 -8.5244 7.5996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776123073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -179.864799 kcal Electronic energy + Delta-G solvation = -26816.122350 eV Core-core repulsion = 22622.895494 eV Total energy + Delta-G solvation = -4193.226856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.12952 -41.29285 -38.92109 -38.23506 -37.29299 -37.19216 -35.94438 -35.54830 -33.28548 -33.14772 -31.41822 -28.78111 -27.62801 -26.57880 -24.04658 -23.97739 -23.52427 -22.24497 -20.69559 -19.37646 -18.90770 -18.85499 -18.42556 -18.37716 -18.27032 -17.33535 -17.11387 -16.63344 -16.54334 -16.32268 -15.72456 -15.46523 -15.27979 -15.08930 -14.85194 -14.57643 -14.47995 -14.00714 -13.90408 -13.76978 -13.64111 -13.34274 -13.22486 -13.08955 -12.94726 -12.88516 -12.82754 -12.30496 -12.22090 -12.06350 -11.99162 -11.84274 -11.72882 -11.32102 -11.04038 -10.64571 -9.83630 -9.03638 -8.26879 -6.40988 -0.96580 0.08172 0.24401 1.09786 1.40358 1.44415 1.50599 1.52593 1.80224 2.37349 2.49687 2.53688 2.62562 3.06545 3.12188 3.44841 3.50584 3.60550 3.79730 3.95549 4.04082 4.05561 4.08725 4.16995 4.24022 4.31199 4.47666 4.65509 4.67938 4.71834 5.03048 5.08952 5.23561 5.23880 5.25458 5.40605 5.50681 5.66830 5.78904 6.04405 6.12907 6.54082 6.71851 7.29000 8.85411 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002828 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.944239 B = 9897.849431 C =11321.928652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.599 3.401 12 O -0.973 6.973 13 O -0.983 6.983 14 N -1.034 6.034 15 C 0.529 3.471 16 O -0.530 6.530 17 C -0.087 4.087 18 C -0.072 4.072 19 C -0.091 4.091 20 C -0.108 4.108 21 C 0.011 3.989 22 C 0.006 3.994 23 C -0.097 4.097 24 O -0.330 6.330 25 C 0.205 3.795 26 O -0.328 6.328 27 H 0.268 0.732 28 H 0.015 0.985 29 H 0.001 0.999 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.454 0.546 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.790 -22.237 2.630 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.698 3.302 12 O -0.963 6.963 13 O -0.973 6.973 14 N -0.802 5.802 15 C 0.318 3.682 16 O -0.403 6.403 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.033 4.033 22 C -0.038 4.038 23 C -0.116 4.116 24 O -0.247 6.247 25 C 0.094 3.906 26 O -0.245 6.245 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.020 0.980 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.295 0.705 33 H 0.186 0.814 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 17.579 -21.815 3.564 28.242 hybrid contribution 0.299 0.939 0.324 1.038 sum 17.878 -20.876 3.888 27.759 Atomic orbital electron populations 1.70088 1.08071 1.28456 1.50731 1.26124 0.95885 1.03905 0.94290 0.85356 0.78160 0.77202 0.79492 1.18279 1.20889 1.19166 1.21471 0.93996 0.90735 1.51776 0.90623 1.18814 0.93523 0.92900 0.96457 1.30229 1.12784 1.15587 1.12516 1.05343 0.74924 0.76994 0.72986 1.93561 1.71598 1.85540 1.45582 1.93548 1.72130 1.84972 1.46668 1.54807 1.47965 1.49238 1.28201 1.21536 0.81793 0.85220 0.79698 1.90962 1.70312 1.44943 1.34106 1.20945 0.95032 0.99198 0.97590 1.19266 0.96206 0.97086 0.94723 1.21237 0.94110 0.97464 0.98057 1.20408 1.02430 1.00485 0.89337 1.20176 0.95320 1.01136 0.86650 1.20006 0.97529 0.98366 0.87916 1.20208 1.00519 1.02227 0.88657 1.87322 1.36297 1.75396 1.25664 1.26090 0.79228 0.86621 0.98649 1.87317 1.66990 1.45515 1.24657 0.92330 0.96690 0.98039 0.84831 0.82728 0.70526 0.81388 0.83018 0.81269 0.83002 0.83826 0.87406 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.58 -22.30 5.82 71.98 0.42 -21.88 16 11 S 2.60 90.32 5.11 -56.49 -0.29 90.03 16 12 O -0.97 -36.75 18.08 -127.65 -2.31 -39.05 16 13 O -0.98 -43.56 17.03 -120.71 -2.06 -45.62 16 14 N -1.03 -20.56 5.60 -173.53 -0.97 -21.54 16 15 C 0.53 11.16 7.56 87.66 0.66 11.82 16 16 O -0.53 -17.40 14.14 13.37 0.19 -17.21 16 17 C -0.09 -0.81 5.83 29.10 0.17 -0.64 16 18 C -0.07 -1.17 4.37 -19.86 -0.09 -1.26 16 19 C -0.09 -1.42 9.69 22.27 0.22 -1.20 16 20 C -0.11 -2.03 10.06 22.35 0.22 -1.81 16 21 C 0.01 0.26 7.15 22.59 0.16 0.42 16 22 C 0.01 0.14 7.15 22.59 0.16 0.30 16 23 C -0.10 -1.99 9.71 22.34 0.22 -1.77 16 24 O -0.33 -7.59 11.40 -76.01 -0.87 -8.46 16 25 C 0.20 3.17 8.89 113.37 1.01 4.18 16 26 O -0.33 -7.26 11.40 -76.10 -0.87 -8.13 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 30 H 0.13 5.10 7.19 -2.39 -0.02 5.09 16 31 H 0.15 4.78 8.14 -2.39 -0.02 4.77 16 32 H 0.45 4.18 8.79 -96.74 -0.85 3.33 16 33 H 0.17 0.01 8.08 -2.39 -0.02 -0.01 16 34 H 0.15 0.42 8.08 -2.39 -0.02 0.40 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -92.43 355.78 -0.61 -93.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.25 Total: 8.84 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 4.00 Total: -40.49 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -0.69 Total: -78.73 kcal Atomic # 8 Polarization: -112.57 SS G_CDS: -5.91 Total: -118.48 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 90.32 SS G_CDS: -0.29 Total: 90.03 kcal Total: -92.43 -0.61 -93.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.825 kcal (2) G-P(sol) polarization free energy of solvation -92.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds