Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99883 * 2 1 4 4 O 1.20821 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00035 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46717 * 324.99583 * 5 3 2 7 7 C 1.52996 * 109.47450 * 84.99298 * 5 3 2 8 8 S 1.81399 * 109.47136 * 205.00035 * 5 3 2 9 9 O 1.42107 * 110.53998 * 307.53306 * 8 5 3 10 10 O 1.42102 * 110.54561 * 170.78662 * 8 5 3 11 11 N 1.65595 * 104.45249 * 59.15511 * 8 5 3 12 12 C 1.34786 * 119.99808 * 65.96139 * 11 8 5 13 13 O 1.21550 * 119.99838 * 4.75138 * 12 11 8 14 14 C 1.47884 * 120.00072 * 184.75151 * 12 11 8 15 15 C 1.39925 * 120.02272 * 359.72173 * 14 12 11 16 16 C 1.38328 * 120.35714 * 180.25344 * 15 14 12 17 17 C 1.37753 * 120.41118 * 0.04903 * 16 15 14 18 18 C 1.40752 * 120.03952 * 359.94925 * 17 16 15 19 19 C 1.41438 * 120.17609 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99921 * 325.88515 * 19 18 17 21 21 C 1.39931 * 119.99924 * 145.87985 * 19 18 17 22 22 N 1.30823 * 120.00135 * 2.88424 * 21 19 18 23 23 Si 1.86802 * 120.00041 * 182.88212 * 21 19 18 24 24 H 1.48495 * 109.47280 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47206 * 120.00185 * 23 21 19 26 26 H 1.48502 * 109.46984 * 240.00164 * 23 21 19 27 27 C 1.38989 * 120.02437 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.46940 * 60.00414 * 1 2 3 29 29 H 1.08994 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46865 * 300.00311 * 1 2 3 31 31 H 1.09003 * 109.47058 * 64.95109 * 7 5 3 32 32 H 1.09006 * 109.46792 * 184.94471 * 7 5 3 33 33 H 1.08999 * 109.47427 * 304.94766 * 7 5 3 34 34 H 0.97003 * 120.00642 * 245.96258 * 11 8 5 35 35 H 1.08000 * 119.82127 * 0.27629 * 15 14 12 36 36 H 1.07994 * 119.79583 * 179.97438 * 16 15 14 37 37 H 1.08004 * 119.98165 * 179.97438 * 17 16 15 38 38 H 0.96999 * 120.00577 * 179.97438 * 22 21 19 39 39 H 1.07997 * 120.20555 * 359.69899 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9734 0.4531 0.5887 7 6 4.0817 1.1762 -1.4377 8 16 4.0893 2.8543 0.7223 9 8 3.4332 3.9385 0.0793 10 8 5.4952 2.8672 0.9285 11 7 3.4524 2.8403 2.2508 12 6 3.8929 1.9443 3.1563 13 8 4.8167 1.2044 2.8793 14 6 3.2525 1.8615 4.4866 15 6 2.1929 2.7170 4.8081 16 6 1.5923 2.6490 6.0523 17 6 2.0306 1.7395 6.9894 18 6 3.0951 0.8707 6.6841 19 6 3.5471 -0.0646 7.6440 20 1 3.5272 0.1869 8.6942 21 6 4.0198 -1.3159 7.2330 22 7 4.0967 -1.5997 5.9583 23 14 4.5411 -2.5811 8.5046 24 1 4.3582 -2.0185 9.8666 25 1 3.7089 -3.8022 8.3581 26 1 5.9703 -2.9287 8.3000 27 6 3.7068 0.9381 5.4209 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.7465 2.0449 -2.0044 32 1 5.1713 1.1449 -1.4316 33 1 3.6947 0.2687 -1.9010 34 1 2.7622 3.4768 2.4946 35 1 1.8419 3.4340 4.0807 36 1 0.7754 3.3139 6.2909 37 1 1.5568 1.6926 7.9589 38 1 4.4247 -2.4669 5.6733 39 1 4.5243 0.2758 5.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798200367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -168.491368 kcal Electronic energy + Delta-G solvation = -28115.610246 eV Core-core repulsion = 23922.876579 eV Total energy + Delta-G solvation = -4192.733667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82996 -39.76258 -37.44783 -37.16497 -36.69515 -36.12631 -34.35036 -33.90140 -33.62143 -30.27319 -29.60708 -28.09035 -25.53128 -25.30548 -23.59168 -21.77551 -21.14637 -20.38632 -19.45850 -18.37144 -18.13106 -17.92656 -17.24592 -16.62077 -16.28224 -16.21824 -15.44109 -15.07540 -14.78136 -14.69293 -14.34653 -14.19980 -13.82762 -13.42526 -13.37422 -13.04281 -12.87021 -12.74357 -12.53079 -12.44174 -12.21898 -12.17065 -12.06170 -11.83756 -11.24725 -11.23860 -11.15267 -11.04074 -10.86584 -10.81472 -10.59651 -10.47284 -10.30306 -9.87296 -9.56763 -9.33724 -7.87516 -7.56400 -6.77752 -4.57378 -0.13640 1.74162 1.76432 2.09837 2.53986 2.68396 3.01847 3.04323 3.08743 3.26962 3.55355 3.87712 4.03277 4.10079 4.43709 4.54824 4.65613 4.91311 4.95287 5.02583 5.05878 5.19278 5.34243 5.35912 5.39168 5.54181 5.88974 6.00687 6.09236 6.49175 6.69522 6.85497 6.96534 7.12893 7.20269 7.28277 7.51028 7.60289 7.82777 7.99415 8.10372 8.37458 8.68557 8.73712 10.13955 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003679 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.150534 B = 7608.106805 C = 7783.766913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.342 6.342 3 C 0.492 3.508 4 O -0.485 6.485 5 C -0.607 4.607 6 H 0.178 0.822 7 C -0.135 4.135 8 S 2.623 3.377 9 O -0.920 6.920 10 O -0.912 6.912 11 N -1.051 6.051 12 C 0.581 3.419 13 O -0.499 6.499 14 C -0.143 4.143 15 C -0.201 4.201 16 C -0.104 4.104 17 C -0.191 4.191 18 C 0.092 3.908 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.069 3.931 22 N -0.803 5.803 23 Si 0.919 3.081 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.072 4.072 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.435 0.565 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.283 0.717 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 1.640 -11.522 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.258 6.258 3 C 0.332 3.668 4 O -0.372 6.372 5 C -0.712 4.712 6 H 0.196 0.804 7 C -0.194 4.194 8 S 2.711 3.289 9 O -0.911 6.911 10 O -0.903 6.903 11 N -0.819 5.819 12 C 0.373 3.627 13 O -0.373 6.373 14 C -0.148 4.148 15 C -0.221 4.221 16 C -0.122 4.122 17 C -0.211 4.211 18 C 0.090 3.910 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.148 4.148 22 N -0.430 5.430 23 Si 0.743 3.257 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.093 4.093 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.517 1.812 -12.266 12.888 hybrid contribution -0.811 -0.996 0.658 1.443 sum -4.329 0.817 -11.608 12.416 Atomic orbital electron populations 1.23438 0.75249 1.04348 1.03110 1.86505 1.24105 1.31940 1.83240 1.22056 0.89165 0.82573 0.72962 1.90843 1.66250 1.35426 1.44706 1.30840 0.98062 1.29581 1.12751 0.80430 1.21574 1.03344 1.05674 0.88791 1.05193 0.74803 0.75306 0.73600 1.93653 1.76303 1.46982 1.74137 1.93686 1.28110 1.85174 1.83288 1.54993 1.53113 1.43830 1.29970 1.18962 0.80988 0.77055 0.85700 1.90872 1.26365 1.40922 1.79118 1.19377 1.00491 1.02518 0.92448 1.20469 1.01055 1.02793 0.97780 1.20484 0.99228 0.98696 0.93805 1.21326 0.99110 1.01392 0.99258 1.17664 0.89709 0.91154 0.92518 1.19594 1.36944 0.97764 0.94738 0.90051 1.25935 0.92988 0.99730 0.96130 1.69691 1.34794 1.22948 1.15520 0.86086 0.78842 0.79764 0.80994 1.18490 1.19886 1.19749 1.22008 0.99320 0.95109 0.92819 0.91517 0.87562 0.91045 0.90224 0.88683 0.88818 0.72578 0.88715 0.88367 0.88144 0.90613 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.34 -4.49 10.57 -39.26 -0.41 -4.90 16 3 C 0.49 6.98 6.95 36.01 0.25 7.23 16 4 O -0.49 -7.60 15.00 -25.00 -0.38 -7.98 16 5 C -0.61 -8.06 3.24 -27.89 -0.09 -8.15 16 6 H 0.18 2.33 7.49 -51.92 -0.39 1.94 16 7 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 8 S 2.62 41.47 4.30 -107.50 -0.46 41.01 16 9 O -0.92 -15.37 16.89 -65.12 -1.10 -16.47 16 10 O -0.91 -16.87 16.87 -65.27 -1.10 -17.97 16 11 N -1.05 -17.60 5.40 30.54 0.17 -17.43 16 12 C 0.58 11.83 7.52 -12.31 -0.09 11.74 16 13 O -0.50 -11.18 14.63 -13.39 -0.20 -11.38 16 14 C -0.14 -3.16 5.87 -105.04 -0.62 -3.78 16 15 C -0.20 -3.97 9.55 -38.92 -0.37 -4.34 16 16 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 17 C -0.19 -4.23 9.78 -38.81 -0.38 -4.61 16 18 C 0.09 2.29 5.55 -106.87 -0.59 1.70 16 19 C -0.46 -11.51 9.05 -37.73 -0.34 -11.85 16 20 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 21 C 0.07 1.66 5.41 -17.35 -0.09 1.56 16 22 N -0.80 -20.21 10.61 55.55 0.59 -19.62 16 23 Si 0.92 18.16 29.56 -169.99 -5.02 13.13 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.07 -1.81 8.21 -38.44 -0.32 -2.12 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.44 6.28 6.82 -34.47 -0.24 6.05 16 35 H 0.09 1.54 6.39 -52.49 -0.34 1.20 16 36 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 39 H 0.15 3.97 5.72 -52.49 -0.30 3.67 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -31.92 353.55 -8.41 -40.33 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.19 Total: 10.60 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.63 Total: -14.65 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.75 Total: -37.05 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -3.19 Total: -58.70 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 16 Polarization: 41.47 SS G_CDS: -0.46 Total: 41.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.92 -8.41 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798200367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.162 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds