Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99883 * 2 1 4 4 O 1.20821 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00035 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46717 * 324.99583 * 5 3 2 7 7 C 1.52996 * 109.47450 * 84.99298 * 5 3 2 8 8 S 1.81399 * 109.47136 * 205.00035 * 5 3 2 9 9 O 1.42107 * 110.53998 * 307.53306 * 8 5 3 10 10 O 1.42102 * 110.54561 * 170.78662 * 8 5 3 11 11 N 1.65595 * 104.45249 * 59.15511 * 8 5 3 12 12 C 1.34786 * 119.99808 * 65.96139 * 11 8 5 13 13 O 1.21550 * 119.99838 * 4.75138 * 12 11 8 14 14 C 1.47884 * 120.00072 * 184.75151 * 12 11 8 15 15 C 1.39925 * 120.02272 * 359.72173 * 14 12 11 16 16 C 1.38328 * 120.35714 * 180.25344 * 15 14 12 17 17 C 1.37753 * 120.41118 * 0.04903 * 16 15 14 18 18 C 1.40752 * 120.03952 * 359.94925 * 17 16 15 19 19 C 1.41438 * 120.17609 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99921 * 325.88515 * 19 18 17 21 21 C 1.39931 * 119.99924 * 145.87985 * 19 18 17 22 22 N 1.30823 * 120.00135 * 2.88424 * 21 19 18 23 23 Si 1.86802 * 120.00041 * 182.88212 * 21 19 18 24 24 H 1.48495 * 109.47280 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47206 * 120.00185 * 23 21 19 26 26 H 1.48502 * 109.46984 * 240.00164 * 23 21 19 27 27 C 1.38989 * 120.02437 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.46940 * 60.00414 * 1 2 3 29 29 H 1.08994 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46865 * 300.00311 * 1 2 3 31 31 H 1.09003 * 109.47058 * 64.95109 * 7 5 3 32 32 H 1.09006 * 109.46792 * 184.94471 * 7 5 3 33 33 H 1.08999 * 109.47427 * 304.94766 * 7 5 3 34 34 H 0.97003 * 120.00642 * 245.96258 * 11 8 5 35 35 H 1.08000 * 119.82127 * 0.27629 * 15 14 12 36 36 H 1.07994 * 119.79583 * 179.97438 * 16 15 14 37 37 H 1.08004 * 119.98165 * 179.97438 * 17 16 15 38 38 H 0.96999 * 120.00577 * 179.97438 * 22 21 19 39 39 H 1.07997 * 120.20555 * 359.69899 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9734 0.4531 0.5887 7 6 4.0817 1.1762 -1.4377 8 16 4.0893 2.8543 0.7223 9 8 3.4332 3.9385 0.0793 10 8 5.4952 2.8672 0.9285 11 7 3.4524 2.8403 2.2508 12 6 3.8929 1.9443 3.1563 13 8 4.8167 1.2044 2.8793 14 6 3.2525 1.8615 4.4866 15 6 2.1929 2.7170 4.8081 16 6 1.5923 2.6490 6.0523 17 6 2.0306 1.7395 6.9894 18 6 3.0951 0.8707 6.6841 19 6 3.5471 -0.0646 7.6440 20 1 3.5272 0.1869 8.6942 21 6 4.0198 -1.3159 7.2330 22 7 4.0967 -1.5997 5.9583 23 14 4.5411 -2.5811 8.5046 24 1 4.3582 -2.0185 9.8666 25 1 3.7089 -3.8022 8.3581 26 1 5.9703 -2.9287 8.3000 27 6 3.7068 0.9381 5.4209 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.7465 2.0449 -2.0044 32 1 5.1713 1.1449 -1.4316 33 1 3.6947 0.2687 -1.9010 34 1 2.7622 3.4768 2.4946 35 1 1.8419 3.4340 4.0807 36 1 0.7754 3.3139 6.2909 37 1 1.5568 1.6926 7.9589 38 1 4.4247 -2.4669 5.6733 39 1 4.5243 0.2758 5.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798200367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -189.605007 kcal Electronic energy + Delta-G solvation = -28116.525802 eV Core-core repulsion = 23922.876579 eV Total energy + Delta-G solvation = -4193.649223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90263 -41.38224 -39.05666 -38.53465 -37.81898 -37.47798 -35.93232 -35.32494 -34.88844 -32.00276 -31.33781 -28.91339 -27.28225 -26.28375 -25.19833 -22.92968 -22.79515 -21.99093 -20.80782 -19.90298 -19.36140 -19.20826 -18.50673 -17.98286 -17.55148 -17.44195 -17.11324 -16.52839 -16.30737 -16.18621 -15.95736 -15.20423 -15.12122 -14.78739 -14.67192 -14.38586 -14.30105 -13.91797 -13.74235 -13.60120 -13.57718 -13.45739 -13.37279 -13.01006 -12.88992 -12.83730 -12.56956 -12.39090 -12.23129 -12.04837 -11.97966 -11.95153 -11.76917 -11.55966 -11.26067 -11.07942 -9.60560 -9.32859 -8.54066 -6.43886 -1.40107 0.05318 0.66463 0.91030 0.97827 1.37576 1.40950 1.44104 1.55178 1.67825 2.22813 2.24366 2.76830 2.86551 3.10632 3.31897 3.44814 3.60042 3.69301 3.86279 4.18651 4.27512 4.34221 4.35722 4.40708 4.51222 4.64438 4.82733 4.85101 5.01643 5.02709 5.10942 5.33317 5.46429 5.49432 5.79203 5.86443 6.07412 6.22812 6.24499 6.44668 6.56460 6.89951 6.92057 8.39155 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003679 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.150534 B = 7608.106805 C = 7783.766913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.349 6.349 3 C 0.491 3.509 4 O -0.503 6.503 5 C -0.596 4.596 6 H 0.179 0.821 7 C -0.143 4.143 8 S 2.630 3.370 9 O -0.928 6.928 10 O -0.943 6.943 11 N -1.042 6.042 12 C 0.587 3.413 13 O -0.525 6.525 14 C -0.154 4.154 15 C -0.184 4.184 16 C -0.102 4.102 17 C -0.192 4.192 18 C 0.061 3.939 19 C -0.496 4.496 20 H 0.082 0.918 21 C 0.026 3.974 22 N -0.840 5.840 23 Si 0.987 3.013 24 H -0.255 1.255 25 H -0.267 1.267 26 H -0.271 1.271 27 C -0.107 4.107 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.445 0.555 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.285 0.715 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 2.096 -12.295 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.332 3.668 4 O -0.392 6.392 5 C -0.705 4.705 6 H 0.196 0.804 7 C -0.201 4.201 8 S 2.721 3.279 9 O -0.919 6.919 10 O -0.934 6.934 11 N -0.809 5.809 12 C 0.379 3.621 13 O -0.401 6.401 14 C -0.159 4.159 15 C -0.203 4.203 16 C -0.120 4.120 17 C -0.212 4.212 18 C 0.059 3.941 19 C -0.526 4.526 20 H 0.100 0.900 21 C -0.186 4.186 22 N -0.468 5.468 23 Si 0.808 3.192 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.196 1.196 27 C -0.128 4.128 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.286 0.714 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.171 2.329 -13.024 14.205 hybrid contribution -0.451 -1.017 0.762 1.348 sum -5.622 1.312 -12.262 13.553 Atomic orbital electron populations 1.23786 0.73440 1.06396 1.03504 1.86498 1.25930 1.31224 1.82784 1.22141 0.89323 0.82731 0.72582 1.90831 1.66632 1.35956 1.45777 1.30690 0.98098 1.26893 1.14866 0.80375 1.21841 1.04502 1.07397 0.86403 1.04855 0.73976 0.76028 0.73013 1.93641 1.76166 1.48325 1.73756 1.93655 1.29945 1.86173 1.83584 1.54817 1.52949 1.43112 1.30032 1.18720 0.80535 0.77207 0.85652 1.90857 1.27479 1.42155 1.79574 1.19607 1.01207 1.02272 0.92790 1.20988 0.98988 1.01760 0.98610 1.20952 0.99771 0.98262 0.92980 1.21621 0.98224 1.00872 1.00464 1.17986 0.91029 0.92303 0.92827 1.19843 1.38998 0.98883 0.94903 0.89986 1.26769 0.92622 1.01328 0.97901 1.69810 1.36201 1.23494 1.17251 0.85068 0.78287 0.77210 0.78602 1.17815 1.19206 1.19622 1.21799 0.99971 0.96725 0.94300 0.90166 0.84807 0.91649 0.89129 0.87150 0.86490 0.71387 0.84576 0.84003 0.86758 0.90466 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.56 113.37 1.20 1.57 16 2 O -0.35 -8.54 10.57 -51.42 -0.54 -9.08 16 3 C 0.49 13.14 6.95 71.24 0.50 13.64 16 4 O -0.50 -14.89 15.00 27.95 0.42 -14.47 16 5 C -0.60 -15.08 3.24 29.85 0.10 -14.98 16 6 H 0.18 4.57 7.49 -2.39 -0.02 4.56 16 7 C -0.14 -2.46 9.18 71.98 0.66 -1.79 16 8 S 2.63 80.95 4.30 -56.49 -0.24 80.71 16 9 O -0.93 -29.76 16.89 -120.41 -2.03 -31.80 16 10 O -0.94 -34.84 16.87 -120.25 -2.03 -36.87 16 11 N -1.04 -33.85 5.40 -175.56 -0.95 -34.80 16 12 C 0.59 23.99 7.52 86.80 0.65 24.65 16 13 O -0.53 -24.20 14.63 14.02 0.21 -24.00 16 14 C -0.15 -6.79 5.87 -20.13 -0.12 -6.91 16 15 C -0.18 -6.80 9.55 22.70 0.22 -6.58 16 16 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 17 C -0.19 -8.34 9.78 22.77 0.22 -8.11 16 18 C 0.06 3.10 5.55 -21.32 -0.12 2.98 16 19 C -0.50 -25.68 9.05 23.47 0.21 -25.46 16 20 H 0.08 4.04 7.85 -2.91 -0.02 4.01 16 21 C 0.03 1.31 5.41 85.25 0.46 1.77 16 22 N -0.84 -44.29 10.61 21.82 0.23 -44.06 16 23 Si 0.99 38.12 29.56 68.60 2.03 40.15 16 24 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.11 -5.57 8.21 23.01 0.19 -5.38 16 28 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.45 11.95 6.82 -96.74 -0.66 11.29 16 35 H 0.14 3.85 6.39 -2.91 -0.02 3.84 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.12 6.73 5.72 -2.91 -0.02 6.72 16 Total: -1.00 -71.53 353.55 1.93 -69.60 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.45 Total: 32.74 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.39 Total: -28.13 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -0.72 Total: -78.86 kcal Atomic # 8 Polarization: -112.23 SS G_CDS: -3.98 Total: -116.21 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 16 Polarization: 80.95 SS G_CDS: -0.24 Total: 80.71 kcal Total: -71.53 1.93 -69.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798200367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.002 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds