Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47320 * 270.00701 * 3 2 1 5 5 H 1.48509 * 109.46797 * 30.00288 * 3 2 1 6 6 H 1.48501 * 109.47044 * 149.99783 * 3 2 1 7 7 C 1.37881 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46662 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99702 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47042 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46673 * 65.00369 * 12 11 10 14 14 C 1.34234 * 116.99616 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99830 * 179.97438 * 14 13 12 17 17 S 1.81405 * 109.46997 * 179.97438 * 16 14 13 18 18 C 1.76195 * 102.99835 * 179.97438 * 17 16 14 19 19 C 1.38978 * 120.07911 * 179.97438 * 18 17 16 20 20 C 1.38087 * 119.91880 * 180.02562 * 19 18 17 21 21 C 1.38300 * 120.07979 * 0.02681 * 20 19 18 22 22 N 1.48007 * 119.91969 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00052 * 179.72348 * 22 21 20 25 25 C 1.38307 * 120.16166 * 0.22510 * 21 20 19 26 26 C 1.38084 * 120.07949 * 359.49978 * 25 21 20 27 27 H 0.96998 * 119.99898 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00840 * 9 7 2 29 29 H 1.08996 * 109.47556 * 300.00676 * 9 7 2 30 30 H 1.09007 * 109.47240 * 59.99744 * 11 10 9 31 31 H 1.09000 * 109.47064 * 300.00394 * 11 10 9 32 32 H 1.08987 * 109.47072 * 305.00103 * 12 11 10 33 33 H 1.09005 * 109.46961 * 184.99565 * 12 11 10 34 34 H 1.08994 * 109.47246 * 59.99599 * 16 14 13 35 35 H 1.09004 * 109.46839 * 299.99602 * 16 14 13 36 36 H 1.07998 * 120.04022 * 0.02562 * 19 18 17 37 37 H 1.07995 * 119.95791 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.95583 * 179.72607 * 25 21 20 39 39 H 1.07999 * 120.04149 * 180.23208 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3992 -5.8892 1.2391 14 6 4.3940 -6.7764 1.3978 15 8 4.6289 -7.5824 0.5290 16 6 5.2178 -6.7669 2.6596 17 16 6.4717 -8.0750 2.5730 18 6 7.3220 -7.9112 4.1074 19 6 8.3769 -8.7626 4.4135 20 6 9.0407 -8.6316 5.6173 21 6 8.6565 -7.6550 6.5180 22 7 9.3701 -7.5182 7.8075 23 8 10.2942 -8.2655 8.0744 24 8 9.0362 -6.6553 8.5997 25 6 7.6038 -6.8093 6.2190 26 6 6.9390 -6.9307 5.0148 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 0.9451 -4.9822 -0.8914 31 1 0.9445 -4.9827 0.8886 32 1 3.3214 -5.7953 -0.8434 33 1 2.1819 -6.9375 -0.0916 34 1 4.5695 -6.9418 3.5181 35 1 5.7084 -5.7993 2.7659 36 1 8.6772 -9.5258 3.7108 37 1 9.8608 -9.2926 5.8556 38 1 7.3037 -6.0507 6.9267 39 1 6.1195 -6.2676 4.7804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815184609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -105.639571 kcal Electronic energy + Delta-G solvation = -24895.468681 eV Core-core repulsion = 20705.460472 eV Total energy + Delta-G solvation = -4190.008209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50196 -40.66213 -39.81062 -37.33142 -36.89078 -36.29807 -32.90198 -32.78275 -32.25317 -31.26853 -29.79411 -27.12341 -26.99995 -23.91961 -23.07269 -22.82889 -22.38432 -21.38657 -19.83458 -18.99080 -18.67988 -18.02293 -17.85377 -17.05919 -16.77612 -16.32943 -16.04961 -15.71708 -15.51179 -15.41148 -14.85762 -14.56669 -14.43760 -14.29711 -13.83610 -13.73381 -13.17720 -12.90442 -12.76082 -12.29081 -12.07237 -11.90213 -11.58578 -11.55841 -11.46387 -11.13037 -11.01458 -10.97890 -10.94639 -10.90051 -10.76418 -10.60980 -10.14829 -10.06795 -9.23239 -8.99098 -8.32267 -8.28616 -6.20411 -4.22664 -0.69526 0.33083 0.35257 0.81808 1.03593 1.45363 1.81389 2.41665 2.59575 3.24051 3.29515 3.34138 3.74673 3.88666 4.19612 4.20959 4.23935 4.25971 4.30649 4.54001 4.58039 4.63022 4.96167 4.99902 5.00576 5.14512 5.16330 5.21661 5.26694 5.59838 5.68600 5.75857 5.88353 6.02274 6.24040 6.93854 7.28802 7.28824 7.38825 7.68585 8.02312 8.40148 8.89163 9.42446 10.90985 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.001915 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.094176 B =14617.959115 C =16634.518259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.392 6.392 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.332 6.332 14 C 0.482 3.518 15 O -0.496 6.496 16 C -0.140 4.140 17 S 0.015 5.985 18 C -0.055 4.055 19 C -0.102 4.102 20 C -0.031 4.031 21 C -0.059 4.059 22 N 0.031 4.969 23 O -0.164 6.164 24 O -0.162 6.162 25 C -0.027 4.027 26 C -0.140 4.140 27 H 0.265 0.735 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.411 -19.934 9.388 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.312 6.312 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.247 6.247 14 C 0.323 3.677 15 O -0.384 6.384 16 C -0.288 4.288 17 S 0.263 5.737 18 C -0.169 4.169 19 C -0.127 4.127 20 C -0.053 4.053 21 C -0.146 4.146 22 N 0.550 4.450 23 O -0.379 6.379 24 O -0.377 6.377 25 C -0.048 4.048 26 C -0.165 4.165 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.185 -20.815 7.423 25.733 hybrid contribution -0.093 1.839 1.297 2.252 sum 13.092 -18.976 8.720 24.648 Atomic orbital electron populations 1.69950 1.06108 1.27309 1.50272 1.24955 0.95009 0.99502 0.95027 0.86321 0.79650 0.82136 0.78298 1.20411 1.21000 1.19614 1.21022 0.94058 0.89244 1.51189 0.91536 1.20256 0.88716 0.83407 0.95587 1.87915 1.35404 1.12595 1.95254 1.22340 0.93093 0.85451 1.00837 1.23364 0.93643 0.99233 0.83538 1.86576 1.42709 1.53168 1.42262 1.22136 0.79633 0.78856 0.87100 1.90722 1.67399 1.37697 1.42627 1.23564 1.00343 1.04829 1.00097 1.86447 1.33174 1.39813 1.14245 1.22665 0.98151 0.97044 0.99062 1.20744 0.95002 1.00167 0.96758 1.20973 0.98437 0.94584 0.91297 1.21103 1.01078 1.05166 0.87228 1.43580 0.99946 0.99261 1.02249 1.94541 1.20598 1.40782 1.81953 1.94559 1.70287 1.28212 1.44665 1.20982 0.90855 0.96119 0.96821 1.21288 1.02306 0.99569 0.93350 0.92548 0.97521 0.97445 0.91590 0.93050 0.90052 0.90004 0.84586 0.84312 0.82866 0.82377 0.82397 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.74 9.43 -34.44 -0.32 -15.06 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.19 5.09 5.69 36.01 0.20 5.29 16 10 O -0.39 -8.90 10.30 -38.80 -0.40 -9.30 16 11 C 0.06 1.00 6.33 37.16 0.24 1.24 16 12 C 0.08 1.04 5.84 37.16 0.22 1.26 16 13 O -0.33 -4.63 10.19 -42.04 -0.43 -5.06 16 14 C 0.48 5.67 7.98 36.01 0.29 5.96 16 15 O -0.50 -6.91 15.61 -18.74 -0.29 -7.20 16 16 C -0.14 -1.05 4.93 36.01 0.18 -0.87 16 17 S 0.01 0.11 21.06 -107.50 -2.26 -2.15 16 18 C -0.05 -0.35 6.11 -39.03 -0.24 -0.59 16 19 C -0.10 -0.56 9.79 -39.36 -0.39 -0.95 16 20 C -0.03 -0.20 9.55 -39.61 -0.38 -0.57 16 21 C -0.06 -0.48 6.85 -79.90 -0.55 -1.03 16 22 N 0.03 0.33 4.45 33.98 0.15 0.48 16 23 O -0.16 -1.84 18.44 -29.46 -0.54 -2.38 16 24 O -0.16 -1.88 18.44 -29.46 -0.54 -2.42 16 25 C -0.03 -0.18 9.55 -39.61 -0.38 -0.56 16 26 C -0.14 -0.82 9.36 -39.36 -0.37 -1.19 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.15 8.13 -51.94 -0.42 0.73 16 33 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.14 0.68 7.75 -51.93 -0.40 0.28 16 35 H 0.14 0.84 7.75 -51.92 -0.40 0.44 16 36 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.16 0.74 7.60 -52.49 -0.40 0.34 16 38 H 0.16 0.90 7.60 -52.49 -0.40 0.50 16 39 H 0.15 0.60 5.88 -52.49 -0.31 0.30 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.00 369.12 -9.05 -43.06 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -4.41 Total: -5.91 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.60 Total: -5.58 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.89 Total: -24.86 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.21 Total: -26.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.26 Total: -2.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.00 -9.05 -43.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.583 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds