Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47320 * 270.00701 * 3 2 1 5 5 H 1.48509 * 109.46797 * 30.00288 * 3 2 1 6 6 H 1.48501 * 109.47044 * 149.99783 * 3 2 1 7 7 C 1.37881 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.46662 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99702 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47042 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46673 * 65.00369 * 12 11 10 14 14 C 1.34234 * 116.99616 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99830 * 179.97438 * 14 13 12 17 17 S 1.81405 * 109.46997 * 179.97438 * 16 14 13 18 18 C 1.76195 * 102.99835 * 179.97438 * 17 16 14 19 19 C 1.38978 * 120.07911 * 179.97438 * 18 17 16 20 20 C 1.38087 * 119.91880 * 180.02562 * 19 18 17 21 21 C 1.38300 * 120.07979 * 0.02681 * 20 19 18 22 22 N 1.48007 * 119.91969 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00052 * 179.72348 * 22 21 20 25 25 C 1.38307 * 120.16166 * 0.22510 * 21 20 19 26 26 C 1.38084 * 120.07949 * 359.49978 * 25 21 20 27 27 H 0.96998 * 119.99898 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00840 * 9 7 2 29 29 H 1.08996 * 109.47556 * 300.00676 * 9 7 2 30 30 H 1.09007 * 109.47240 * 59.99744 * 11 10 9 31 31 H 1.09000 * 109.47064 * 300.00394 * 11 10 9 32 32 H 1.08987 * 109.47072 * 305.00103 * 12 11 10 33 33 H 1.09005 * 109.46961 * 184.99565 * 12 11 10 34 34 H 1.08994 * 109.47246 * 59.99599 * 16 14 13 35 35 H 1.09004 * 109.46839 * 299.99602 * 16 14 13 36 36 H 1.07998 * 120.04022 * 0.02562 * 19 18 17 37 37 H 1.07995 * 119.95791 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.95583 * 179.72607 * 25 21 20 39 39 H 1.07999 * 120.04149 * 180.23208 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3992 -5.8892 1.2391 14 6 4.3940 -6.7764 1.3978 15 8 4.6289 -7.5824 0.5290 16 6 5.2178 -6.7669 2.6596 17 16 6.4717 -8.0750 2.5730 18 6 7.3220 -7.9112 4.1074 19 6 8.3769 -8.7626 4.4135 20 6 9.0407 -8.6316 5.6173 21 6 8.6565 -7.6550 6.5180 22 7 9.3701 -7.5182 7.8075 23 8 10.2942 -8.2655 8.0744 24 8 9.0362 -6.6553 8.5997 25 6 7.6038 -6.8093 6.2190 26 6 6.9390 -6.9307 5.0148 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 0.9451 -4.9822 -0.8914 31 1 0.9445 -4.9827 0.8886 32 1 3.3214 -5.7953 -0.8434 33 1 2.1819 -6.9375 -0.0916 34 1 4.5695 -6.9418 3.5181 35 1 5.7084 -5.7993 2.7659 36 1 8.6772 -9.5258 3.7108 37 1 9.8608 -9.2926 5.8556 38 1 7.3037 -6.0507 6.9267 39 1 6.1195 -6.2676 4.7804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815184609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -124.492762 kcal Electronic energy + Delta-G solvation = -24896.286217 eV Core-core repulsion = 20705.460472 eV Total energy + Delta-G solvation = -4190.825745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.24307 -41.64782 -40.33074 -38.80506 -37.68665 -37.58134 -34.95908 -33.37694 -32.79779 -32.17732 -30.93300 -28.98099 -27.79094 -24.68087 -24.43424 -23.84000 -23.62565 -22.36994 -20.46703 -19.75490 -19.37864 -18.89960 -18.64731 -18.60423 -18.12306 -17.42686 -17.24651 -16.68339 -16.47636 -16.25155 -15.98729 -15.88949 -15.23017 -15.21560 -14.87959 -14.50760 -14.24300 -13.93648 -13.76798 -13.60243 -13.23483 -12.93287 -12.80280 -12.71666 -12.66511 -12.48836 -12.33446 -12.31621 -12.05083 -11.82960 -11.78404 -11.55426 -11.49198 -11.29362 -10.90794 -10.52629 -10.28412 -8.84319 -8.33345 -6.45228 -1.36473 -0.24611 -0.12309 0.13479 0.37932 0.89893 0.92065 1.40599 1.42391 1.54362 1.56209 2.09385 2.33303 3.00971 3.03832 3.28518 3.35462 3.43611 3.71603 3.75354 3.79677 3.88330 4.03815 4.08975 4.18561 4.39107 4.45651 4.49430 4.59404 4.64011 4.65730 4.77459 4.85053 5.06707 5.16676 5.25613 5.34826 5.53360 5.94101 6.43021 6.45345 6.50019 6.78333 7.26372 8.78546 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.001915 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.094176 B =14617.959115 C =16634.518259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.080 3.920 13 O -0.349 6.349 14 C 0.481 3.519 15 O -0.521 6.521 16 C -0.136 4.136 17 S 0.000 6.000 18 C -0.051 4.051 19 C -0.098 4.098 20 C -0.029 4.029 21 C -0.075 4.075 22 N 0.034 4.966 23 O -0.178 6.178 24 O -0.191 6.191 25 C -0.030 4.030 26 C -0.137 4.137 27 H 0.271 0.729 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.973 -20.038 9.228 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.025 4.025 12 C 0.007 3.993 13 O -0.265 6.265 14 C 0.324 3.676 15 O -0.411 6.411 16 C -0.284 4.284 17 S 0.248 5.752 18 C -0.166 4.166 19 C -0.122 4.122 20 C -0.050 4.050 21 C -0.162 4.162 22 N 0.547 4.453 23 O -0.392 6.392 24 O -0.402 6.402 25 C -0.051 4.051 26 C -0.162 4.162 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.192 0.808 37 H 0.190 0.810 38 H 0.183 0.817 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 13.751 -20.926 7.293 26.080 hybrid contribution -0.307 1.732 1.270 2.170 sum 13.444 -19.194 8.564 24.950 Atomic orbital electron populations 1.70049 1.07639 1.28656 1.50400 1.25923 0.95966 1.03284 0.93999 0.85219 0.78433 0.77219 0.78777 1.19441 1.19998 1.18860 1.21373 0.94089 0.90871 1.52285 0.92085 1.19872 0.88552 0.84344 0.93958 1.87853 1.35481 1.14178 1.95349 1.22674 0.94539 0.83328 1.02003 1.23274 0.93065 0.99389 0.83602 1.86562 1.43592 1.54222 1.42095 1.22809 0.78996 0.77737 0.88076 1.90712 1.67926 1.38532 1.43888 1.23661 1.00313 1.05714 0.98719 1.86582 1.33573 1.39974 1.15083 1.22700 0.98138 0.97290 0.98439 1.20996 0.94336 1.00251 0.96627 1.21173 0.98695 0.94141 0.91002 1.21320 1.01867 1.06703 0.86343 1.43928 0.99771 0.98721 1.02931 1.94515 1.21285 1.40911 1.82517 1.94543 1.70823 1.28939 1.45865 1.21144 0.90537 0.96080 0.97361 1.21509 1.02491 0.99560 0.92616 0.92031 0.99050 0.99114 0.90022 0.92307 0.90698 0.86914 0.81675 0.82543 0.80785 0.81040 0.81726 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.98 43.02 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -31.54 9.43 25.60 0.24 -31.30 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.21 11.07 5.69 71.24 0.41 11.48 16 10 O -0.41 -18.65 10.30 -145.57 -1.50 -20.15 16 11 C 0.05 1.67 6.33 71.98 0.46 2.12 16 12 C 0.08 2.11 5.84 71.98 0.42 2.53 16 13 O -0.35 -9.24 10.19 -48.81 -0.50 -9.73 16 14 C 0.48 10.48 7.98 71.24 0.57 11.05 16 15 O -0.52 -13.78 15.61 21.98 0.34 -13.44 16 16 C -0.14 -1.68 4.93 71.24 0.35 -1.33 16 17 S 0.00 0.00 21.06 -56.49 -1.19 -1.19 16 18 C -0.05 -0.52 6.11 22.62 0.14 -0.38 16 19 C -0.10 -0.85 9.79 22.41 0.22 -0.63 16 20 C -0.03 -0.31 9.55 22.25 0.21 -0.10 16 21 C -0.08 -1.15 6.85 36.41 0.25 -0.90 16 22 N 0.03 0.71 4.45 -46.40 -0.21 0.50 16 23 O -0.18 -4.02 18.44 18.88 0.35 -3.67 16 24 O -0.19 -4.54 18.44 18.89 0.35 -4.19 16 25 C -0.03 -0.36 9.55 22.25 0.21 -0.15 16 26 C -0.14 -1.27 9.36 22.41 0.21 -1.06 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 33 H 0.11 2.27 8.13 -2.38 -0.02 2.25 16 34 H 0.17 1.08 7.75 -2.39 -0.02 1.06 16 35 H 0.16 1.42 7.75 -2.39 -0.02 1.40 16 36 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 37 H 0.17 1.32 7.60 -2.91 -0.02 1.30 16 38 H 0.17 1.70 7.60 -2.91 -0.02 1.68 16 39 H 0.17 0.82 5.88 -2.91 -0.02 0.80 16 Total: -1.00 -73.85 369.12 5.19 -68.65 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 1.09 Total: -0.25 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.15 Total: -7.81 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.08 Total: -53.25 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.96 Total: -51.19 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.19 Total: -1.19 kcal Total: -73.85 5.19 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.838 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds