Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47123 * 240.00040 * 3 2 1 5 5 H 1.48506 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47358 * 119.99723 * 3 2 1 7 7 C 1.37877 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99792 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.46990 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54456 * 68.37386 * 10 9 7 12 12 O 1.42107 * 110.54269 * 291.62258 * 10 9 7 13 13 N 1.65598 * 104.44893 * 180.02562 * 10 9 7 14 14 C 1.34774 * 120.00356 * 65.00343 * 13 10 9 15 15 O 1.21593 * 119.99706 * 359.97438 * 14 13 10 16 16 C 1.47604 * 120.00590 * 180.02562 * 14 13 10 17 17 C 1.39703 * 120.04515 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.07522 * 179.97438 * 17 16 14 19 19 C 1.38778 * 119.91294 * 0.02562 * 18 17 16 20 20 C 1.39028 * 120.29130 * 359.97438 * 19 18 17 21 21 C 1.38054 * 120.21513 * 0.02562 * 20 19 18 22 22 O 1.36497 * 119.58315 * 179.97438 * 20 19 18 23 23 C 1.42715 * 115.88467 * 68.26673 * 22 20 19 24 24 C 1.52065 * 110.87111 * 275.53601 * 23 22 20 25 25 C 1.52064 * 112.29068 * 64.86073 * 24 23 22 26 26 O 1.36316 * 120.15188 * 179.97438 * 19 18 17 27 27 H 0.96994 * 120.00179 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47168 * 60.00221 * 9 7 2 29 29 H 1.09006 * 109.47105 * 299.99992 * 9 7 2 30 30 H 0.97003 * 120.00187 * 244.99458 * 13 10 9 31 31 H 1.08000 * 119.96417 * 359.97438 * 17 16 14 32 32 H 1.08002 * 120.04485 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.19485 * 180.02562 * 21 20 19 34 34 H 1.08997 * 109.08776 * 155.22379 * 23 22 20 35 35 H 1.09000 * 109.24929 * 35.94761 * 23 22 20 36 36 H 1.09002 * 108.90269 * 304.16479 * 24 23 22 37 37 H 1.09000 * 108.90112 * 185.55465 * 24 23 22 38 38 H 1.09002 * 109.21338 * 55.54629 * 25 24 23 39 39 H 1.08998 * 109.21069 * 174.87220 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8778 0.0005 11 8 3.1267 -3.9382 1.2375 12 8 3.1266 -3.9382 -1.2365 13 7 1.4796 -5.2340 -0.0002 14 6 0.6893 -5.5026 -1.0583 15 8 0.6737 -4.7489 -2.0123 16 6 -0.1582 -6.7111 -1.0588 17 6 -0.1423 -7.5770 0.0374 18 6 -0.9341 -8.7057 0.0379 19 6 -1.7470 -8.9813 -1.0526 20 6 -1.7673 -8.1236 -2.1466 21 6 -0.9780 -6.9910 -2.1563 22 8 -2.5718 -8.4089 -3.2117 23 6 -3.9760 -8.3124 -2.9754 24 6 -4.5132 -9.5997 -2.3698 25 6 -3.9403 -9.8698 -0.9874 26 8 -2.5313 -10.0962 -1.0576 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 1.4918 -5.8352 0.7610 31 1 0.4909 -7.3620 0.8855 32 1 -0.9217 -9.3745 0.8858 33 1 -0.9944 -6.3247 -3.0061 34 1 -4.4842 -8.1211 -3.9205 35 1 -4.1693 -7.4862 -2.2913 36 1 -4.2587 -10.4318 -3.0263 37 1 -5.5983 -9.5286 -2.2947 38 1 -4.1339 -9.0109 -0.3448 39 1 -4.4244 -10.7499 -0.5642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = -155.160422 kcal Electronic energy + Delta-G solvation = -27261.868233 eV Core-core repulsion = 23069.712639 eV Total energy + Delta-G solvation = -4192.155594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30338 -39.94646 -37.85485 -37.52335 -36.25415 -35.20565 -34.33585 -33.36803 -33.22966 -31.09385 -29.65551 -29.07008 -27.02296 -24.39820 -23.52660 -23.03073 -22.01430 -21.27936 -19.46879 -18.88337 -18.17734 -17.42122 -17.29128 -16.61572 -16.39312 -15.78578 -15.73468 -15.65257 -15.09401 -14.81963 -14.61404 -14.50560 -14.30152 -14.22150 -14.20451 -13.77211 -13.30854 -12.55018 -12.29181 -12.24396 -12.16344 -11.94205 -11.71988 -11.48998 -11.32269 -11.25485 -11.22277 -10.89519 -10.82693 -10.68682 -10.54811 -10.38195 -10.14405 -9.85626 -9.23953 -9.19720 -8.88056 -8.71226 -6.34102 -4.45465 0.30956 0.85372 0.99119 2.32117 3.00723 3.10701 3.18304 3.24217 3.26460 3.31241 3.55464 4.18501 4.20947 4.25504 4.28586 4.47673 4.55552 4.67483 4.71037 4.83536 4.83843 4.89464 4.95929 4.98716 5.15243 5.17588 5.21214 5.30507 5.48664 5.57507 5.69329 5.87816 5.90671 6.08507 6.55812 6.71991 6.74252 6.93973 7.17876 7.40154 7.65364 7.73264 8.55411 9.21976 10.77632 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002758 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.374140 B =10150.802065 C =10906.711454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.071 0.929 9 C -0.403 4.403 10 S 2.553 3.447 11 O -0.967 6.967 12 O -0.950 6.950 13 N -1.056 6.056 14 C 0.580 3.420 15 O -0.478 6.478 16 C -0.127 4.127 17 C -0.071 4.071 18 C -0.124 4.124 19 C 0.093 3.907 20 C 0.056 3.944 21 C -0.050 4.050 22 O -0.314 6.314 23 C 0.056 3.944 24 C -0.188 4.188 25 C 0.060 3.940 26 O -0.319 6.319 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.423 0.577 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 -20.168 0.432 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.540 4.540 10 S 2.655 3.345 11 O -0.957 6.957 12 O -0.940 6.940 13 N -0.816 5.816 14 C 0.367 3.633 15 O -0.350 6.350 16 C -0.132 4.132 17 C -0.090 4.090 18 C -0.142 4.142 19 C 0.048 3.952 20 C 0.012 3.988 21 C -0.069 4.069 22 O -0.231 6.231 23 C -0.018 4.018 24 C -0.225 4.225 25 C -0.015 4.015 26 O -0.236 6.236 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.258 0.742 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.863 -19.825 -0.490 22.611 hybrid contribution -0.543 0.728 0.596 1.086 sum -11.406 -19.097 0.106 22.244 Atomic orbital electron populations 1.69940 1.06273 1.27881 1.47208 1.24914 0.95037 0.99571 0.93350 0.86396 0.79617 0.81248 0.79490 1.19333 1.20680 1.19399 1.20247 0.92738 0.88436 1.56100 0.91129 1.27598 1.09840 1.09060 1.07471 1.07197 0.77261 0.75862 0.74132 1.93524 1.71049 1.85897 1.45265 1.93539 1.70720 1.85096 1.44629 1.55463 1.56010 1.43924 1.26204 1.17921 0.78500 0.85371 0.81523 1.91009 1.63605 1.47987 1.32398 1.19822 1.00541 0.96718 0.96160 1.21287 0.97371 0.92922 0.97441 1.21010 0.98199 0.97616 0.97399 1.19443 0.94984 0.87620 0.93133 1.18987 0.96900 0.94343 0.88598 1.21263 0.93523 0.94064 0.98074 1.86393 1.16368 1.88218 1.32079 1.22659 0.79937 0.96660 1.02586 1.22487 1.01760 1.00163 0.98140 1.22675 0.79317 1.03040 0.96458 1.86314 1.17041 1.27166 1.93040 0.92085 0.88299 0.89616 0.74227 0.84136 0.83803 0.82812 0.87564 0.92084 0.89714 0.88977 0.92109 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.29 55.43 0.74 -24.17 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.91 9.13 -34.44 -0.31 -15.22 16 8 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 9 C -0.40 -9.91 5.64 36.01 0.20 -9.70 16 10 S 2.55 54.70 5.03 -107.50 -0.54 54.16 16 11 O -0.97 -21.66 18.08 -57.54 -1.04 -22.70 16 12 O -0.95 -23.52 17.03 -64.79 -1.10 -24.62 16 13 N -1.06 -16.83 5.55 30.47 0.17 -16.66 16 14 C 0.58 9.75 7.50 -12.44 -0.09 9.65 16 15 O -0.48 -9.94 14.44 -11.86 -0.17 -10.11 16 16 C -0.13 -1.68 5.88 -104.94 -0.62 -2.29 16 17 C -0.07 -0.71 9.53 -39.17 -0.37 -1.08 16 18 C -0.12 -1.14 9.98 -39.51 -0.39 -1.53 16 19 C 0.09 1.01 5.74 -39.09 -0.22 0.78 16 20 C 0.06 0.67 5.72 -39.36 -0.23 0.45 16 21 C -0.05 -0.65 9.54 -39.06 -0.37 -1.03 16 22 O -0.31 -3.67 10.16 -36.77 -0.37 -4.05 16 23 C 0.06 0.44 6.49 36.68 0.24 0.68 16 24 C -0.19 -1.13 5.93 -27.68 -0.16 -1.29 16 25 C 0.06 0.40 6.51 36.68 0.24 0.64 16 26 O -0.32 -3.24 10.15 -36.19 -0.37 -3.61 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.10 2.54 7.19 -51.92 -0.37 2.17 16 29 H 0.09 2.02 8.14 -51.92 -0.42 1.59 16 30 H 0.42 4.79 6.80 -34.47 -0.23 4.55 16 31 H 0.14 0.98 6.38 -52.49 -0.34 0.65 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 2.07 7.65 -52.49 -0.40 1.67 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -37.06 346.31 -8.93 -45.99 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.24 Total: 2.43 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.20 Total: -17.90 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.91 Total: -40.83 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -3.06 Total: -65.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.54 Total: 54.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.06 -8.93 -45.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.166 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds