Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47242 * 274.67874 * 3 2 1 5 5 H 1.48502 * 109.47244 * 34.67611 * 3 2 1 6 6 H 1.48499 * 109.47299 * 154.67785 * 3 2 1 7 7 C 1.39903 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00250 * 197.48536 * 7 2 1 9 9 C 1.41136 * 119.99986 * 17.47908 * 7 2 1 10 10 C 1.40880 * 120.15703 * 25.17748 * 9 7 2 11 11 C 1.36349 * 119.82928 * 180.25042 * 10 9 7 12 12 C 1.39527 * 120.16569 * 359.48394 * 11 10 9 13 13 N 1.39082 * 119.83697 * 180.27563 * 12 11 10 14 14 C 1.34770 * 119.99715 * 33.30394 * 13 12 11 15 15 O 1.21724 * 120.00663 * 5.20078 * 14 13 12 16 16 C 1.46457 * 119.99876 * 185.19965 * 14 13 12 17 17 C 1.36680 * 125.18580 * 179.97438 * 16 14 13 18 18 C 1.36827 * 114.71006 * 179.97438 * 17 16 14 19 19 C 1.36413 * 114.79058 * 0.02562 * 18 17 16 20 20 C 1.47883 * 125.14104 * 180.02562 * 19 18 17 21 21 N 1.34204 * 126.70777 * 359.68543 * 20 19 18 22 22 N 1.28983 * 107.25316 * 179.83835 * 21 20 19 23 23 N 1.28721 * 108.99322 * 0.43543 * 22 21 20 24 24 H 0.97001 * 125.31575 * 179.72821 * 23 22 21 25 25 N 1.28870 * 109.36807 * 359.72149 * 23 22 21 26 26 S 1.75834 * 109.70829 * 359.73297 * 19 18 17 27 27 C 1.39529 * 120.32472 * 0.25390 * 12 11 10 28 28 C 1.36350 * 120.16586 * 359.97438 * 27 12 11 29 29 H 0.97007 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.08738 * 0.03132 * 10 9 7 31 31 H 1.08004 * 119.91943 * 179.76282 * 11 10 9 32 32 H 0.96996 * 119.99469 * 213.30091 * 13 12 11 33 33 H 1.07999 * 122.64513 * 0.02562 * 17 16 14 34 34 H 1.08005 * 122.60430 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.91715 * 180.02562 * 27 12 11 36 36 H 1.07999 * 120.08567 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3914 2.1034 -1.3954 5 1 1.4932 2.6221 0.7966 6 1 3.5862 1.4135 0.5988 7 6 2.0082 -1.2116 0.0005 8 1 3.0507 -1.2331 0.2816 9 6 1.3514 -2.4058 -0.3660 10 6 0.2241 -2.3632 -1.2100 11 6 -0.4084 -3.5206 -1.5558 12 6 0.0646 -4.7458 -1.0847 13 7 -0.5824 -5.9226 -1.4464 14 6 -1.1576 -6.0296 -2.6605 15 8 -1.0303 -5.1344 -3.4754 16 6 -1.9358 -7.2231 -2.9995 17 6 -2.5625 -7.4415 -4.1943 18 6 -3.2307 -8.6325 -4.2804 19 6 -3.1636 -9.4082 -3.1604 20 6 -3.7992 -10.7343 -3.0041 21 7 -4.5390 -11.3819 -3.9175 22 7 -4.9012 -12.5026 -3.3917 23 7 -4.4300 -12.5761 -2.1961 24 1 -4.5626 -13.3182 -1.5857 25 7 -3.7545 -11.5097 -1.9367 26 16 -2.2002 -8.5965 -1.9337 27 6 1.1837 -4.7962 -0.2529 28 6 1.8237 -3.6467 0.1050 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1402 -1.4160 -1.5793 31 1 -1.2750 -3.4893 -2.1996 32 1 -0.6196 -6.6663 -0.8247 33 1 -2.5320 -6.7305 -5.0067 34 1 -3.7700 -8.9345 -5.1661 35 1 1.5444 -5.7482 0.1076 36 1 2.6901 -3.6873 0.7486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822815406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = 149.214855 kcal Electronic energy + Delta-G solvation = -24362.609101 eV Core-core repulsion = 20555.546632 eV Total energy + Delta-G solvation = -3807.062470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.84351 -39.81745 -37.97657 -37.05207 -34.72735 -34.54214 -33.79083 -33.04503 -30.23986 -29.51144 -28.88969 -26.32460 -25.05248 -24.69341 -23.11786 -21.97695 -21.32490 -20.24100 -20.05818 -18.72813 -18.26443 -17.55391 -17.36186 -16.56623 -15.94114 -15.72644 -15.25478 -14.77248 -14.48669 -14.00660 -13.97705 -13.42569 -13.36297 -12.99827 -12.91162 -12.67257 -12.36425 -12.09865 -11.88423 -11.78434 -11.59210 -11.47069 -11.26114 -11.20405 -11.15703 -11.12010 -10.71959 -10.03125 -9.74760 -9.57562 -9.16399 -8.99736 -8.87651 -8.80189 -7.57553 -7.05591 -6.78392 -4.33983 -0.15110 0.71045 0.99863 1.50988 1.62148 1.82181 2.40922 2.66787 3.03383 3.05797 3.09920 3.11470 3.26704 3.50201 3.57169 3.90515 3.93259 4.59022 4.80704 4.94085 4.94747 5.07016 5.25366 5.66150 5.71744 5.88463 5.94580 6.06774 6.10224 6.33829 6.68725 6.91255 6.99055 7.09489 7.22514 7.53328 7.60249 7.70958 7.87181 8.01173 8.11347 8.24257 8.55366 8.61785 8.83632 8.94201 10.13348 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.001951 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.693793 B =14348.065969 C =14744.026940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.107 3.893 10 C -0.155 4.155 11 C -0.083 4.083 12 C -0.012 4.012 13 N -0.639 5.639 14 C 0.566 3.434 15 O -0.511 6.511 16 C -0.218 4.218 17 C -0.075 4.075 18 C -0.079 4.079 19 C -0.135 4.135 20 C 0.252 3.748 21 N -0.259 5.259 22 N -0.046 5.046 23 N -0.224 5.224 24 H 0.477 0.523 25 N -0.293 5.293 26 S 0.221 5.779 27 C -0.100 4.100 28 C -0.215 4.215 29 H 0.282 0.718 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.391 0.609 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -20.492 -2.632 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.104 3.896 10 C -0.175 4.175 11 C -0.103 4.103 12 C -0.104 4.104 13 N -0.281 5.281 14 C 0.352 3.648 15 O -0.389 6.389 16 C -0.340 4.340 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.257 4.257 20 C -0.029 4.029 21 N -0.133 5.133 22 N -0.041 5.041 23 N -0.070 5.070 24 H 0.332 0.668 25 N -0.146 5.146 26 S 0.488 5.512 27 C -0.120 4.120 28 C -0.235 4.235 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.225 0.775 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.109 0.891 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.280 -20.573 -1.856 22.255 hybrid contribution -0.047 0.453 -0.468 0.653 sum -8.328 -20.120 -2.324 21.899 Atomic orbital electron populations 1.69844 1.07616 1.29403 1.34381 1.25953 0.94769 1.01476 0.92261 0.86270 0.80545 0.80516 0.79243 1.19249 1.20260 1.18529 1.19591 0.98052 0.91221 1.39527 0.90234 1.17695 0.91333 0.92119 0.88433 1.20973 0.99234 0.96752 1.00552 1.20427 0.99186 0.91188 0.99457 1.17100 0.99006 0.84117 1.10221 1.42820 1.54240 1.16420 1.14598 1.16877 0.80403 0.85089 0.82447 1.90860 1.60235 1.39502 1.48268 1.25051 1.08638 1.00383 0.99960 1.20522 0.95786 0.97155 0.97278 1.20465 0.99944 0.92911 0.98118 1.21698 1.08913 0.94503 1.00560 1.22405 0.98323 0.95392 0.86761 1.76189 1.12767 0.99510 1.24844 1.78927 1.16335 1.14655 0.94231 1.47677 1.31691 1.15628 1.12037 0.66812 1.75070 1.17109 0.97049 1.25331 1.84180 1.44715 1.08162 1.14110 1.20029 0.94448 0.97281 1.00236 1.20535 1.03634 0.92509 1.06817 0.90718 0.86143 0.87880 0.77532 0.82047 0.82350 0.89076 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 10.97 55.55 0.61 -19.55 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.85 9.03 -37.86 -0.34 -12.19 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.11 2.82 5.57 -106.80 -0.59 2.23 16 10 C -0.16 -4.10 8.63 -39.26 -0.34 -4.44 16 11 C -0.08 -2.03 8.57 -39.78 -0.34 -2.37 16 12 C -0.01 -0.27 6.29 -83.61 -0.53 -0.80 16 13 N -0.64 -11.40 5.30 -10.98 -0.06 -11.46 16 14 C 0.57 10.11 7.50 -12.95 -0.10 10.01 16 15 O -0.51 -11.04 14.45 5.17 0.07 -10.96 16 16 C -0.22 -2.96 6.43 -36.84 -0.24 -3.20 16 17 C -0.08 -0.89 9.88 -40.66 -0.40 -1.29 16 18 C -0.08 -0.81 10.09 -40.75 -0.41 -1.22 16 19 C -0.13 -1.46 6.48 -36.29 -0.24 -1.69 16 20 C 0.25 2.69 8.16 -156.25 -1.28 1.41 16 21 N -0.26 -2.82 12.51 32.08 0.40 -2.41 16 22 N -0.05 -0.41 13.46 60.35 0.81 0.41 16 23 N -0.22 -1.40 7.90 60.35 0.48 -0.93 16 24 H 0.48 0.60 8.96 -340.33 -3.05 -2.45 16 25 N -0.29 -2.68 12.41 32.09 0.40 -2.28 16 26 S 0.22 2.38 22.33 -107.50 -2.40 -0.02 16 27 C -0.10 -2.16 9.89 -39.78 -0.39 -2.55 16 28 C -0.21 -5.11 9.74 -39.26 -0.38 -5.50 16 29 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 30 H 0.12 3.29 6.19 -52.49 -0.32 2.97 16 31 H 0.10 2.53 6.38 -52.48 -0.33 2.19 16 32 H 0.39 5.62 7.90 -40.82 -0.32 5.30 16 33 H 0.16 1.82 8.03 -52.49 -0.42 1.40 16 34 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -31.86 339.50 -10.54 -42.40 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.27 Total: 6.13 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -5.67 Total: -19.85 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 2.64 Total: -36.22 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.40 Total: -0.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.86 -10.54 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822815406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.610 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds